Metagenome / Metatranscriptome Family F083084

Basic Information
Family ID	F083084
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	50 residues
Representative Sequence	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR
Number of Associated Samples	102
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.239 % of family members)
Environment Ontology (ENVO)	Unclassified (20.354 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (34.513 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF07228	SpoIIE	81.25
PF01740	STAS	10.71
PF02518	HATPase_c	2.68
PF05532	CsbD	1.79
PF00072	Response_reg	0.89
PF13649	Methyltransf_25	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.79

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.96%
Host-Associated	Host-Associated	15.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.22%
Plants	Host-Associated → Plants	15.04%
Aquatic	Environmental → Aquatic	9.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.96%
Sediment	Environmental → Aquatic → Sediment	6.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.19%
Freshwater	Environmental → Aquatic → Freshwater	3.54%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.89%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.41%
Loam	Environmental → Terrestrial → Soil → Loam	8.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.19%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.24%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.19%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.42%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.89%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_102720541	3300001356	Peatlands Soil	MTEAAGSDQLTELEARYAALRQAARSAGAEPGDVLDAAFTELEGAIDLLRAAGASPGEPGRR
Ga0062385_109921932	3300004080	Bog Forest Soil	MTEAPGSDQVTELEARYVALRQAARSAGAESGDVLDAAFTELEGAIDLLRAAGASS
Ga0063454_1002268851	3300004081	Soil	MTETPDQVAALTARYAALRRAAGSKSADPGGVLEAAFTELEGAIDLLRGD
Ga0062384_1008303581	3300004082	Bog Forest Soil	MSETPGQVTELEARYAALRQAASSKGAAPGDVLDAAFTELEG
Ga0062595_1008409071	3300004479	Soil	MSETPEPLAGLETRYAALRQAARSKGAEPGDVLEAVFTELEGAIDLLRAAGV
Ga0070682_1001147611	3300005337	Corn Rhizosphere	MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGA
Ga0070682_1010701761	3300005337	Corn Rhizosphere	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGA
Ga0070714_1010371982	3300005435	Agricultural Soil	MSETTEPVAGLEARYAALRQAARSESGDPGDVLEAAFTELEGAIDLLR
Ga0070710_101143051	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSETPEPLAGLETRYAALRQAARSKGAEPGDVLEATFTEL
Ga0066682_105237811	3300005450	Soil	MSETTEPVAGLEARYAALRQAARTENGDPGDVLEAAFTELE
Ga0066682_109548672	3300005450	Soil	MSETTEPLAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAAGPE
Ga0073909_105696852	3300005526	Surface Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVAPVRRDD
Ga0070679_1005655911	3300005530	Corn Rhizosphere	MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR
Ga0066697_101882632	3300005540	Soil	MSETTEPVAGLEARYAALRRAARSEGGGSGDVLEAAFTELEGAIDLLRGTGASQAGTSRPGSGDGAP
Ga0070665_1006489662	3300005548	Switchgrass Rhizosphere	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEA
Ga0066707_101393482	3300005556	Soil	MSETTEPVAGLEARYAALRQAARTENGDPGDVLEAAFTELEGAIDLLRSAA
Ga0066698_108396872	3300005558	Soil	MSETTEPVAGLEARYAALRRAARSEGGGSGDVLEAAFTELEGAIDLL
Ga0068852_1001335673	3300005616	Corn Rhizosphere	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFT
Ga0075029_1005700642	3300006052	Watersheds	MTEAPRSDQVTELEARYAALRQAVRSAGAESGDVLDAAFTELEGAIDLLRA
Ga0075030_1011541582	3300006162	Watersheds	MTEAPRSDQVTELEARYAALRQAVRSAGAEPGDVLDAAFTELEGAIDLLRAA
Ga0075014_1006591582	3300006174	Watersheds	MTEAPRSDQVTELEARYVALRQAARSAGAESGDVLDAAFTELEGAIDLLRAAGA
Ga0097621_1006956771	3300006237	Miscanthus Rhizosphere	MTEASDQVAGLSARYAALRQAAGSTGADRGGVLEA
Ga0075021_108090361	3300006354	Watersheds	MTEALGPDQLTELEARYAALRQAARSAAAEPGDVLDAAFTELEGAIDLLRAAG
Ga0075425_1008499931	3300006854	Populus Rhizosphere	MTEASDQVAGLSARYAALRQAAGSSGADRGGVLEAAFTELEEAIDLLRGTESAPRH
Ga0075436_1003391911	3300006914	Populus Rhizosphere	MTEASDQVAGLSARYAALRQAAGSTGADRGGVLEAAFTELEEAIDLLRGTESAPRD
Ga0075436_1003775962	3300006914	Populus Rhizosphere	MSEATEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTE
Ga0079219_123924601	3300006954	Agricultural Soil	MSEAAEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR
Ga0099827_103423293	3300009090	Vadose Zone Soil	MNTTPDQVAELNARYAALRQAARSKGTEPGDVLEAAFTELEGAIELLGSSRPQPGSPGPSQPAG
Ga0116225_12152583	3300009524	Peatlands Soil	MRLDHDMTEAPGSDQLTELEARYAALRQAARSPGAERGDVLDAVFTELEG
Ga0105237_120816572	3300009545	Corn Rhizosphere	MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAI
Ga0116215_11293501	3300009672	Peatlands Soil	MTEAAGSDQLTELEARYAALRQAARSAGAEPGDVLDAAFTELEGAIDLLRAAGA
Ga0116215_12739181	3300009672	Peatlands Soil	MTEAPGSDQFTELEARYSALRQAAGSKGVEPGDVLDAAFTELEGAIDMLRAAGASPSEPGRRP
Ga0126318_102737911	3300010152	Soil	MSETTEPLAGLEARYAALRQAARAEGGVPGDVLEAA
Ga0134086_101755551	3300010323	Grasslands Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEG
Ga0074045_102068142	3300010341	Bog Forest Soil	MTEAPGSDQLTELDARYAALRQAARSSGAEPGDVLEAAFTELEGAIDL
Ga0126378_118664061	3300010361	Tropical Forest Soil	MSADKDMSETPEPLAGLETRYAALRQAARSKNTEPGGVLEAAFTELEGAIDLL
Ga0126381_1044699361	3300010376	Tropical Forest Soil	MSETTEPLAGLEARYAALRQAARSEAGDPGDVLEAAFTELEGAIDLLRSA
Ga0134124_125242492	3300010397	Terrestrial Soil	MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVAPVRRDD
Ga0134124_128266101	3300010397	Terrestrial Soil	MSEPTEPVAGLEARYAALRQAARSEGGEPGDVLEAAFTELEGAIDLLRAVAPVRRDD
Ga0134122_100323951	3300010400	Terrestrial Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLL
Ga0126361_105477431	3300010876	Boreal Forest Soil	MSEASAPDRADLQVTELEARYAALRQAARSRGAEPHDVLDAAFTELEGAIELLRAAPAG
Ga0138514_1001599332	3300011003	Soil	MGADADMSETPEPLAGLETRYAALRQAARSEGAEPGDVLEAAFT
Ga0137388_116551581	3300012189	Vadose Zone Soil	MNTTPDQVAELNARYAALRQAARSKGTEPGDVLEAAFTELEGAIELLGS
Ga0150985_1163845821	3300012212	Avena Fatua Rhizosphere	MTETPDQVAALTARYAALRRAAGSKSADPGGVLEAAFTELEGAID
Ga0137387_112143712	3300012349	Vadose Zone Soil	MNTTPDQVAELNARYAALRQAARSKGTEPGDVLEAAFTELEGAIELLGSSRPQPGSP
Ga0157344_10015272	3300012476	Arabidopsis Rhizosphere	MSEATEPVAGLEARYAALRQAARSDGGDPGDVLEAAYANVFIV
Ga0137396_107854182	3300012918	Vadose Zone Soil	MDMSETPEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEEAIDLLRAVAPVRRDD
Ga0164300_103304282	3300012951	Soil	MSEETEPVASLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVAPVRR
Ga0126369_115445221	3300012971	Tropical Forest Soil	MSETTGPLAGLEARYAALRQAARAENGDPGDVLEAAFTELEGAIDLLRETGAGRA
Ga0134087_102615762	3300012977	Grasslands Soil	MSETTEPVAGLEARYAALRRAARSEGGGSGDVLEAAFTELEGAIDLLRGTGASQ
Ga0157372_118139572	3300013307	Corn Rhizosphere	MSEATEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVA
Ga0181523_104558511	3300014165	Bog	MTEAAGSDQLTELEARYAALRQAARSASAKPGDVLDATFTELEGAIDLLRAAGASSGEPGRRPP
Ga0132258_111525521	3300015371	Arabidopsis Rhizosphere	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRT
Ga0132257_1012165442	3300015373	Arabidopsis Rhizosphere	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAID
Ga0182032_103944352	3300016357	Soil	MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELEGAIDLLRGAGASRAELGGG
Ga0182034_107135441	3300016371	Soil	MSKATEPVAGLEARYAALRQAARSDGGDPRDVLEAAFTELEG
Ga0134074_12427131	3300017657	Grasslands Soil	MSETTEPLAGLEARYAALRQAARSDSGDPGDVLEAAFSELEGAIE
Ga0213881_101049051	3300021374	Exposed Rock	MSENPDQVTGLAARYAALRQAARSSGAEPGDVLEAAFTELEGAIDLLRASGPAPG
Ga0182009_104932641	3300021445	Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAVAPVRRD
Ga0210398_113882621	3300021477	Soil	MTEAPGSDQLTELEARYAALRQAARSKGAEPGDVLDAAFTELEGAIDLLRAAGAS
Ga0210409_111530182	3300021559	Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRSAAPGGRDDSSG
Ga0207699_103271921	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSETPEPLAGLETRYAALRQAARSKGAEPGDVLEAT
Ga0207693_109328582	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSENAEPLAGLEARYAALRQAARSDGGDASDVLEAAFTELEGAID
Ga0207693_114119851	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRA
Ga0207644_112245121	3300025931	Switchgrass Rhizosphere	MTEASDQVAGLSARYAALRQAAGSKGADSGGMLEAAFTELEE
Ga0207711_117212002	3300025941	Switchgrass Rhizosphere	MSEPTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAID
Ga0207689_117574972	3300025942	Miscanthus Rhizosphere	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAV
Ga0207651_113679561	3300025960	Switchgrass Rhizosphere	MSEPTEPVAGLEARYAALRQAARSEGGEPGDVLEAAFTELEGAIDLLRAVAPV
Ga0207648_120587022	3300026089	Miscanthus Rhizosphere	MSEPTEPVAGLEARYAALRQAARSEGGEPGDVLEAAFTELEGAIDLLRAVAPVRRDDSSG
Ga0257164_10295761	3300026497	Soil	MSGSTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR
Ga0209466_10970271	3300027646	Tropical Forest Soil	MSETAEPLAGLEARYAALRQAARSKAGDPGDVLEA
Ga0209177_101479261	3300027775	Agricultural Soil	MTEASDQVAGLSARYAALRQAAGSTGADRGGVLEAAFTELEEA
Ga0209811_103793202	3300027821	Surface Soil	MSEATEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELE
Ga0209590_103445552	3300027882	Vadose Zone Soil	MSQTPDQVAELEARYAALQQAARSKGAEPGDVLDAAFTELEGAIDLLRAAA
Ga0209067_104756871	3300027898	Watersheds	ADNDMTEVAGSDQLTELEARYAALRQAARSASAKPGDVLDATFTELEGAIDLLRPPGAGRWRLPAR
Ga0209067_104756872	3300027898	Watersheds	MTEAAGSDQLTELEARYAALRQAVRSAGAEPGDVLDAAFTELEGAIDLLRAAGAGRWRLPAR
Ga0209415_100522561	3300027905	Peatlands Soil	MRLDHDMTEAPGSDQLTELEARYAALRQAARSPAAERGDVLDAVFTELEGAIDLLRAAG
Ga0209069_109735681	3300027915	Watersheds	MTEALGSDQVAELEARYAALRQAARSTGAEPGDVLDAAFTELEGAIDLLRAAGASPSE
Ga0247682_10581281	3300028146	Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLR
Ga0318573_107388471	3300031564	Soil	MTEAAASDEVTALEARYAALRQAARSAGAEPGDVLEAAFTELEGAIDLLRGTGA
Ga0318561_100629281	3300031679	Soil	MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELE
Ga0318574_109010291	3300031680	Soil	MSETTDYVTELEARYAALRQAAKSKGAEPSDVLEAAFTE
Ga0306917_102245661	3300031719	Soil	MSETTGPLAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLL
Ga0307469_112661731	3300031720	Hardwood Forest Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAF
Ga0318494_103166802	3300031751	Soil	MTEAAASDQVTALEARYAALRQAARSAGAEPGDVLEAAFTELEGAIDLLRAGEAGPGE
Ga0318494_107146292	3300031751	Soil	MSETTGPLAGLEARYAALRQAARAEGGQPGDVLEAAFTELEGAIDLLRS
Ga0318552_101112691	3300031782	Soil	MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELEGAIDLLRGAGASRAEQ
Ga0318552_101660341	3300031782	Soil	MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEGAIDLLRSAAPGGRDEPS
Ga0318529_106012391	3300031792	Soil	MSETAEPLAGLEARYAALRQAARSEAGDPGDVLEAAFTELEGAIDLLRSAAPGGPG
Ga0307473_113201972	3300031820	Hardwood Forest Soil	MSETTEPLAGLEARYAALRQAARSDGGDPGDVLEAAFT
Ga0318511_100094939	3300031845	Soil	MSETAEPLAGLEARYAALRQAARSEGGDPGDVLEAAFTELEEAIDLL
Ga0310912_110207811	3300031941	Soil	MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEGAIDLLRSAAPGG
Ga0310910_103947502	3300031946	Soil	MSETAEPLAGLEARYAALRQAARSEGGDPGDVLEAAFTDLEGAIDLRRGTGASRAEPGS
Ga0308176_112103621	3300031996	Soil	MSETPEPVAGLEARYAALRQAARSDSGEPDDVLEAAFSELEGAIELLR
Ga0318562_103718691	3300032008	Soil	MSETTGPLAGLEARYAALRQTARSEGGDPGDVLEAAFTE
Ga0318563_100836812	3300032009	Soil	MSETTGPLAGLEARYAALRQAARAEGGQPGDVLEAAFTELEGAIDLLRSAAPGGRDEPSG
Ga0318570_100429913	3300032054	Soil	MSETTGPLAGLEARYAALRQAARAEGGQAGDVLEAAFTELEGAIDLLRSAAPGGRDEPSG
Ga0318575_104459851	3300032055	Soil	MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEGAIDLLR
Ga0318514_102598041	3300032066	Soil	MSETTGPLAGLEARYAALRQTARSEGGDPGDVLEAAFTELEGAIDLLRGTGASRAE
Ga0318524_104402032	3300032067	Soil	MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELEGAIDLL
Ga0318553_101442531	3300032068	Soil	MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEG
Ga0318525_101403061	3300032089	Soil	MSETTGPLAGLEARYAALRQAARSEGGQPGDVLEAAFTELEGAIDLLRGAGASRAELGG
Ga0310895_106714462	3300032122	Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAAAPVR
Ga0307470_113755462	3300032174	Hardwood Forest Soil	MSETTEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTE
Ga0307471_1026047091	3300032180	Hardwood Forest Soil	MSETTEPVAGLEARYAALRQAARSESGDPGDVLEAAFTELEGAIDLLRAVAPVRRDDS
Ga0307471_1028638511	3300032180	Hardwood Forest Soil	MGADADMSETPEPLAGLETRYAALRQAARSKGAEPGDVLEAAFTELEGAID
Ga0335080_108787081	3300032828	Soil	MSETPEPLAGLETRYAALRQAARSRRAEPGDVLEAALAELEGAIDLLRAAGVPG
Ga0335081_118763301	3300032892	Soil	MGETRDQAAGLEARYAALRQAARSRSAAPGDVLEAAFTELEGAIDLLRASGAEA
Ga0335072_113295311	3300032898	Soil	MSENPGPVAGLEARYAALRQAARSDAGDPGDVLEAAFSELEG
Ga0335083_106743491	3300032954	Soil	MSETTGPLAGLEARYAALRQAARSEGGDPGDVLEA
Ga0335083_107710202	3300032954	Soil	MSETRDQAAGLEARYAALRQAATSGGAAPGDVLEAA
Ga0335073_116825092	3300033134	Soil	MSEATEPVAGLEARYAALRQAARSEGGDPGDVLEAAFTELEGAIDLLRAV
Ga0310914_110473521	3300033289	Soil	MSETSEPLAGLEGRYAALRQAARAEGGDPGDVLEAAFTELEGAIDLLRSAAPGGRDE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083084

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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