Metagenome Family F083094

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083094
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	39 residues
Representative Sequence	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ
Number of Associated Samples	76
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	75.22 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.796 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (23.009 % of family members)
Environment Ontology (ENVO)	Unclassified (61.947 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.407 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.92% β-sheet: 0.00% Coil/Unstructured: 63.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF05598	DUF772	5.31
PF13751	DDE_Tnp_1_6	4.42
PF03401	TctC	3.54
PF01144	CoA_trans	3.54
PF00005	ABC_tran	3.54
PF00067	p450	3.54
PF13340	DUF4096	2.65
PF00536	SAM_1	2.65
PF00501	AMP-binding	1.77
PF00583	Acetyltransf_1	1.77
PF13586	DDE_Tnp_1_2	1.77
PF00589	Phage_integrase	1.77
PF13683	rve_3	1.77
PF13193	AMP-binding_C	1.77
PF00072	Response_reg	0.88
PF00989	PAS	0.88
PF13458	Peripla_BP_6	0.88
PF11752	DUF3309	0.88
PF04055	Radical_SAM	0.88
PF03461	TRCF	0.88
PF02737	3HCDH_N	0.88
PF03734	YkuD	0.88
PF00107	ADH_zinc_N	0.88
PF06147	DUF968	0.88
PF04860	Phage_portal	0.88
PF01609	DDE_Tnp_1	0.88
PF09335	SNARE_assoc	0.88
PF08327	AHSA1	0.88
PF13714	PEP_mutase	0.88
PF01717	Meth_synt_2	0.88
PF02661	Fic	0.88
PF13770	DUF4169	0.88
PF03471	CorC_HlyC	0.88
PF01921	tRNA-synt_1f	0.88
PF13361	UvrD_C	0.88
PF03354	TerL_ATPase	0.88
PF01161	PBP	0.88
PF05013	FGase	0.88
PF00239	Resolvase	0.88
PF00593	TonB_dep_Rec	0.88
PF10108	DNA_pol_B_exo2	0.88
PF02896	PEP-utilizers_C	0.88
PF06689	zf-C4_ClpX	0.88
PF00484	Pro_CA	0.88
PF05128	DUF697	0.88
PF02786	CPSase_L_D2	0.88
PF00753	Lactamase_B	0.88
PF13502	AsmA_2	0.88
PF08241	Methyltransf_11	0.88
PF12893	Lumazine_bd_2	0.88
PF13676	TIR_2	0.88
PF07886	BA14K	0.88
PF13231	PMT_2	0.88
PF00015	MCPsignal	0.88
PF01039	Carboxyl_trans	0.88
PF04002	RadC	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	3.54
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	3.54
COG2124	Cytochrome P450	Defense mechanisms [V]	3.54
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.54
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	3.54
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.77
COG1197	Transcription-repair coupling factor (superfamily II helicase)	Transcription [K]	1.77
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.88
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.88
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.88
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.88
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.88
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.88
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.88
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.88
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.88
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1384	Lysyl-tRNA synthetase, class I	Translation, ribosomal structure and biogenesis [J]	0.88
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.88
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.88
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.88
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.88
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.88
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.88
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.88
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.88
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.88
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.88
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	0.88
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.88
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.88
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.88
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.88
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.88
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.80 %
Unclassified	root	N/A	29.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.80 %
Unclassified	root	N/A	29.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.80 %
Unclassified	root	N/A	29.20 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.18 %
Unclassified	root	N/A	29.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.02 %
Unclassified	root	N/A	29.20 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	38.05 %
Unclassified	root	N/A	29.20 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.77 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.77 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.88 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.88 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.88 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.39 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.77 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.88 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.88 %
Rhizobiales bacterium 35-68-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-68-8	0.88 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.88 %
unclassified Methylocystaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae	0.88 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	0.88 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.88 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	2.65 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.88 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.88 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	0.88 %
unclassified Microvirga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga	0.88 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.88 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	0.88 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.88 %
Rhizobiales bacterium 35-68-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-68-8	0.88 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Bradyrhizobium archetypum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	2.65 %
Methylocystis sp. ATCC 49242	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. ATCC 49242	0.88 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.88 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.88 %
Microvirga sp. HBU67692	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. HBU67692	0.88 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.88 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.88 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	0.88 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	0.88 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.88 %
Rhizobiales bacterium 35-68-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-68-8	0.88 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001385\|JGI20193J14888_1000793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9069	Open in IMG/M
3300001385\|JGI20193J14888_1002318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4944	Open in IMG/M
3300001385\|JGI20193J14888_1021730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1021	Open in IMG/M
3300001394\|JGI20191J14862_1000382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15245	Open in IMG/M
3300001394\|JGI20191J14862_1000413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14628	Open in IMG/M
3300001394\|JGI20191J14862_1005266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3236	Open in IMG/M
3300001397\|JGI20177J14857_1011886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1507	Open in IMG/M
3300001402\|JGI20195J14853_1000676	All Organisms → cellular organisms → Bacteria → Proteobacteria	11422	Open in IMG/M
3300004080\|Ga0062385_10158893	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300004092\|Ga0062389_102206180	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300005163\|Ga0066823_10108344	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300005938\|Ga0066795_10153969	Not Available	685	Open in IMG/M
3300005938\|Ga0066795_10172489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	644	Open in IMG/M
3300005947\|Ga0066794_10162347	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300005980\|Ga0066798_10018237	All Organisms → cellular organisms → Bacteria → Proteobacteria	2420	Open in IMG/M
3300005980\|Ga0066798_10085484	Not Available	935	Open in IMG/M
3300005980\|Ga0066798_10191565	Not Available	557	Open in IMG/M
3300006055\|Ga0097691_1044214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1603	Open in IMG/M
3300006059\|Ga0075017_100822793	Not Available	718	Open in IMG/M
3300006174\|Ga0075014_100328057	Not Available	814	Open in IMG/M
3300006640\|Ga0075527_10041254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300006950\|Ga0075524_10213341	Not Available	841	Open in IMG/M
3300006950\|Ga0075524_10342949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	656	Open in IMG/M
3300009029\|Ga0066793_10167104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1282	Open in IMG/M
3300009519\|Ga0116108_1007811	All Organisms → cellular organisms → Bacteria	4255	Open in IMG/M
3300009522\|Ga0116218_1518448	Not Available	531	Open in IMG/M
3300009523\|Ga0116221_1316318	Not Available	676	Open in IMG/M
3300009547\|Ga0116136_1041096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1346	Open in IMG/M
3300009552\|Ga0116138_1033427	Not Available	1529	Open in IMG/M
3300009629\|Ga0116119_1025825	Not Available	1593	Open in IMG/M
3300009629\|Ga0116119_1026169	Not Available	1582	Open in IMG/M
3300009632\|Ga0116102_1113038	Not Available	772	Open in IMG/M
3300009639\|Ga0116122_1069534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1167	Open in IMG/M
3300009698\|Ga0116216_10348405	Not Available	901	Open in IMG/M
3300009698\|Ga0116216_10605873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	660	Open in IMG/M
3300009700\|Ga0116217_10210105	All Organisms → cellular organisms → Bacteria → Proteobacteria	1276	Open in IMG/M
3300009764\|Ga0116134_1060835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1421	Open in IMG/M
3300009824\|Ga0116219_10608302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	600	Open in IMG/M
3300009839\|Ga0116223_10377730	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300009839\|Ga0116223_10525072	Not Available	687	Open in IMG/M
3300010343\|Ga0074044_10054053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2749	Open in IMG/M
3300010343\|Ga0074044_10628381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. HBU67692	701	Open in IMG/M
3300010379\|Ga0136449_100126016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5121	Open in IMG/M
3300010379\|Ga0136449_100243098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3355	Open in IMG/M
3300010379\|Ga0136449_100379674	Not Available	2521	Open in IMG/M
3300010379\|Ga0136449_100482168	Not Available	2162	Open in IMG/M
3300010379\|Ga0136449_100508406	All Organisms → cellular organisms → Bacteria	2089	Open in IMG/M
3300010379\|Ga0136449_100811955	All Organisms → cellular organisms → Bacteria → Proteobacteria	1543	Open in IMG/M
3300010379\|Ga0136449_101060809	Not Available	1295	Open in IMG/M
3300010379\|Ga0136449_101154542	Not Available	1226	Open in IMG/M
3300010379\|Ga0136449_101762254	Not Available	929	Open in IMG/M
3300010379\|Ga0136449_103009247	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300014153\|Ga0181527_1431650	Not Available	500	Open in IMG/M
3300014158\|Ga0181521_10439309	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300014165\|Ga0181523_10533229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	647	Open in IMG/M
3300014326\|Ga0157380_12935710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	543	Open in IMG/M
3300014638\|Ga0181536_10007992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10295	Open in IMG/M
3300014638\|Ga0181536_10129656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	1364	Open in IMG/M
3300014638\|Ga0181536_10404034	Not Available	610	Open in IMG/M
3300014638\|Ga0181536_10426638	Not Available	588	Open in IMG/M
3300017823\|Ga0187818_10453360	All Organisms → cellular organisms → Bacteria → Terrabacteria group	573	Open in IMG/M
3300017823\|Ga0187818_10466528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	565	Open in IMG/M
3300017925\|Ga0187856_1144894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	900	Open in IMG/M
3300017929\|Ga0187849_1214060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	747	Open in IMG/M
3300017938\|Ga0187854_10043817	All Organisms → cellular organisms → Bacteria	2271	Open in IMG/M
3300017938\|Ga0187854_10244672	Not Available	780	Open in IMG/M
3300017941\|Ga0187850_10524990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	511	Open in IMG/M
3300017946\|Ga0187879_10229660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1037	Open in IMG/M
3300017995\|Ga0187816_10167850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	951	Open in IMG/M
3300017996\|Ga0187891_1000792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30078	Open in IMG/M
3300017996\|Ga0187891_1004129	All Organisms → cellular organisms → Bacteria → Proteobacteria	9646	Open in IMG/M
3300018008\|Ga0187888_1084740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	1374	Open in IMG/M
3300018008\|Ga0187888_1337532	Not Available	574	Open in IMG/M
3300018014\|Ga0187860_1017472	All Organisms → cellular organisms → Bacteria	4252	Open in IMG/M
3300018017\|Ga0187872_10246880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	801	Open in IMG/M
3300018025\|Ga0187885_10204979	All Organisms → cellular organisms → Bacteria → Proteobacteria	913	Open in IMG/M
3300018030\|Ga0187869_10334446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-68-8	726	Open in IMG/M
3300018040\|Ga0187862_10339587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	936	Open in IMG/M
3300018042\|Ga0187871_10211877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1081	Open in IMG/M
3300018042\|Ga0187871_10435973	Not Available	724	Open in IMG/M
3300018072\|Ga0184635_10335651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	584	Open in IMG/M
3300020583\|Ga0210401_10883869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	753	Open in IMG/M
3300023088\|Ga0224555_1047296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1613	Open in IMG/M
3300024227\|Ga0228598_1010851	Not Available	1814	Open in IMG/M
3300025322\|Ga0209641_10346150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. ATCC 49242	1083	Open in IMG/M
3300025453\|Ga0208455_1013549	Not Available	2016	Open in IMG/M
3300025453\|Ga0208455_1061206	Not Available	777	Open in IMG/M
3300025457\|Ga0208850_1007130	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2252	Open in IMG/M
3300025457\|Ga0208850_1034544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	864	Open in IMG/M
3300025480\|Ga0208688_1034349	All Organisms → cellular organisms → Bacteria → Proteobacteria	1185	Open in IMG/M
3300025481\|Ga0208079_1000199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34314	Open in IMG/M
3300025481\|Ga0208079_1000986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15417	Open in IMG/M
3300025481\|Ga0208079_1031901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1400	Open in IMG/M
3300025482\|Ga0208715_1009062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	2011	Open in IMG/M
3300025484\|Ga0208587_1016839	All Organisms → cellular organisms → Bacteria → Proteobacteria	2408	Open in IMG/M
3300025496\|Ga0208191_1083694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	661	Open in IMG/M
3300025506\|Ga0208937_1013296	All Organisms → cellular organisms → Bacteria → Proteobacteria	2117	Open in IMG/M
3300025852\|Ga0209124_10200473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	788	Open in IMG/M
3300025857\|Ga0209014_10066783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1504	Open in IMG/M
3300025923\|Ga0207681_11808749	Not Available	510	Open in IMG/M
3300026272\|Ga0209913_1042845	Not Available	1095	Open in IMG/M
3300027502\|Ga0209622_1018983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1196	Open in IMG/M
3300027641\|Ga0208827_1154784	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300027854\|Ga0209517_10358105	Not Available	833	Open in IMG/M
3300027889\|Ga0209380_10843099	Not Available	517	Open in IMG/M
3300027898\|Ga0209067_10188854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1105	Open in IMG/M
3300030659\|Ga0316363_10165505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium archetypum	940	Open in IMG/M
3300031708\|Ga0310686_103879356	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300032160\|Ga0311301_10164551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3946	Open in IMG/M
3300032160\|Ga0311301_10194852	All Organisms → cellular organisms → Bacteria → Proteobacteria	3493	Open in IMG/M
3300032160\|Ga0311301_10687015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1443	Open in IMG/M
3300032160\|Ga0311301_11037984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300032160\|Ga0311301_11434565	Not Available	857	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.35%
Host-Associated	Host-Associated	2.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.64%
Aquatic	Environmental → Aquatic	40.71%
Plants	Host-Associated → Plants	2.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.75%
Freshwater	Environmental → Aquatic → Freshwater	37.17%
Sediment	Environmental → Aquatic → Sediment	3.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Peat	Environmental → Terrestrial → Peat	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.25%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	37.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Loam	Environmental → Terrestrial → Soil → Loam	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.01%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	18.58%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	11.50%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	23.01%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	18.58%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	15.04%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	11.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.19%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	6.19%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001385	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012	Environmental	Open in IMG/M
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300001397	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012	Environmental	Open in IMG/M
3300001402	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025484	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025857	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026272	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20193J14888_10007931	3300001385	Arctic Peat Soil	HTSTADRRARQKPAAMSTLQRSNRRTVAAQQFMTQ*
JGI20193J14888_10023181	3300001385	Arctic Peat Soil	NHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
JGI20193J14888_10217301	3300001385	Arctic Peat Soil	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
JGI20191J14862_100038226	3300001394	Arctic Peat Soil	NHTSTADRRARQKPAAMSTLQRSNRRTVAAQQFMTQ*
JGI20191J14862_10004131	3300001394	Arctic Peat Soil	KLNRNHASTADRRARQKPAAMSMLQRSNRRTVAAQQFVTQ*
JGI20191J14862_10052665	3300001394	Arctic Peat Soil	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
JGI20177J14857_10118861	3300001397	Arctic Peat Soil	ASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
JGI20195J14853_10006761	3300001402	Arctic Peat Soil	KLNRNHASTADRRARQKPAAMSXLQRSNRRTVAAQQFVTQ*
Ga0062385_101588931	3300004080	Bog Forest Soil	LDRNHASTIDRRARQKPATMSVLQLCNRKTVTAHKFMTQ*
Ga0062389_1022061801	3300004092	Bog Forest Soil	TARASHPKLDRNHASTADRRSHQNPAAMSLLQCPNRGTVTAQKFMTQ*
Ga0066823_101083441	3300005163	Soil	ARASHPKLDRNHASTIDRRARQKPATMSVLQLCDRKALTAQKFMTQ*
Ga0066795_101539691	3300005938	Soil	ARASHPKLNRNHASAADRRARQKPAAMPMLQRHNRRTVAAQKYVTQ*
Ga0066795_101724892	3300005938	Soil	NSNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
Ga0066794_101623472	3300005947	Soil	SHPKLNRNHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
Ga0066798_100182371	3300005980	Soil	HASTADRRARQKPAAMSMLQCSNRSTVAAQQFVTQ*
Ga0066798_100854841	3300005980	Soil	NHTSTADRRARQKPAAMSTLQRSNRRTVAPQQFVTQ*
Ga0066798_101915651	3300005980	Soil	LNRNHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ*
Ga0097691_10442141	3300006055	Arctic Peat Soil	LNRNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
Ga0075017_1008227931	3300006059	Watersheds	DRNHASTADRRSHQNPAAMSLLQCPNRGTVTAQKFMTQ*
Ga0075014_1003280571	3300006174	Watersheds	NHASTADRRSHQNPAAMSLLQCPNRGTVTAQKFMTQ*
Ga0075527_100412544	3300006640	Arctic Peat Soil	TSTADRRARQKPAAMSMLQRSNRRTVAPQKYVTQ*
Ga0075524_102133412	3300006950	Arctic Peat Soil	NRNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
Ga0075524_103429491	3300006950	Arctic Peat Soil	ASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ*
Ga0066793_101671041	3300009029	Prmafrost Soil	RNHTSTADRRARQKPAAMSTLQRSNRRTVAAQQFVTQ*
Ga0116108_10078111	3300009519	Peatland	DRNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ*
Ga0116218_15184481	3300009522	Peatlands Soil	NHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ*
Ga0116221_13163182	3300009523	Peatlands Soil	RNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ*
Ga0116136_10410961	3300009547	Peatland	PELDRNHASTIDRRSRKKPAAMSLLQRSNLRTVAAQKFMTQ*
Ga0116138_10334271	3300009552	Peatland	ELDRNHASTIDRRSRKKPAAMSLLQLCNRKTVTTQKFMTQ*
Ga0116119_10258251	3300009629	Peatland	HPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0116119_10261692	3300009629	Peatland	ASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ*
Ga0116102_11130381	3300009632	Peatland	LDRNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ*
Ga0116122_10695341	3300009639	Peatland	AATARASHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0116216_103484053	3300009698	Peatlands Soil	DRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKLMTQ*
Ga0116216_106058731	3300009698	Peatlands Soil	HASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ*
Ga0116217_102101051	3300009700	Peatlands Soil	LDRNHASTIDRRARQKPATMPMLQLCNRKAVTAQKFMTQ*
Ga0116134_10608351	3300009764	Peatland	LNCNHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ*
Ga0116219_106083022	3300009824	Peatlands Soil	AATARATHPKLDRNHASTIDRRARQKPTTMPMLQLCNRKAVMAQKFMTQ*
Ga0116223_103777303	3300009839	Peatlands Soil	DRNHASTADRCSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0116223_105250721	3300009839	Peatlands Soil	LDRNHASTADRRARQKPAAMSMLQRCNRKTVTAQKFMTQ*
Ga0074044_100540531	3300010343	Bog Forest Soil	KLDRNHASTIDRRARQKPTTMPMLQLCNRKAVMAQKFMTQ*
Ga0074044_106283811	3300010343	Bog Forest Soil	LDRNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ*
Ga0136449_1001260161	3300010379	Peatlands Soil	HASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ*
Ga0136449_1002430981	3300010379	Peatlands Soil	RASHPELDRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKLMTQ*
Ga0136449_1003796741	3300010379	Peatlands Soil	ATTRAAHPKLDRNHASTADRRARQKPAAMSMLQRCNRKTVPAQKFMTQ*
Ga0136449_1004821681	3300010379	Peatlands Soil	LDRNHASTIDRRARQKPAAMSVLQLCNCKIVTAQKFMTQ*
Ga0136449_1005084061	3300010379	Peatlands Soil	ASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ*
Ga0136449_1008119554	3300010379	Peatlands Soil	RNHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ*
Ga0136449_1010608092	3300010379	Peatlands Soil	ASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0136449_1011545422	3300010379	Peatlands Soil	ASTIDRRARQKPATMPMLQLCNRKAVTAQKFMTQ*
Ga0136449_1017622541	3300010379	Peatlands Soil	DRNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ*
Ga0136449_1030092472	3300010379	Peatlands Soil	DRNHASTIDRRAGQKPAAMSMLQLCNRKATTAQKFMTQ*
Ga0181527_14316502	3300014153	Bog	ASTADRRARQKSAAMSMLQRSNHTTVATQKYVTQ*
Ga0181521_104393091	3300014158	Bog	RNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ*
Ga0181523_105332291	3300014165	Bog	NCNHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ*
Ga0157380_129357102	3300014326	Switchgrass Rhizosphere	ASTIDRRTRQKPATMSMLQFCNRKTVTARKFMTQ*
Ga0181536_100079921	3300014638	Bog	NRNHASTADRRARQKSAAMSMLQRSNRKAAAAQKYVTQ*
Ga0181536_101296561	3300014638	Bog	LNRNHASTADRRARQKSAAMSMLQRSNRKAAAAQKYVTQ*
Ga0181536_104040341	3300014638	Bog	NCNHASTADRRARQKSAAMSMLQRSNHTTVATQKYVTQ*
Ga0181536_104266381	3300014638	Bog	ASTADRRARQKSAAMSMLQRSNRKAAAAQKYVTQ*
Ga0187818_104533601	3300017823	Freshwater Sediment	NHASTIDRRARQKPATMPMLQLCNRKAVTAQKFMTQ
Ga0187818_104665282	3300017823	Freshwater Sediment	AATARASHPKLDRNHASTIDRRARQKPATMSVLQLCNRKTVTAQKLMTQ
Ga0187856_11448941	3300017925	Peatland	AATARASHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTTQKFMTQ
Ga0187849_12140601	3300017929	Peatland	NHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0187854_100438172	3300017938	Peatland	DRNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0187854_102446721	3300017938	Peatland	LDRNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ
Ga0187850_105249902	3300017941	Peatland	SHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0187879_102296604	3300017946	Peatland	GSAATARASHPELDRNHASTIDRRSRKKPAAMSLLQLCNRKTVTTQKFMTQ
Ga0187816_101678501	3300017995	Freshwater Sediment	SAATARASHPKLDRNHASTIDRRARQKPATMPMLQLCNRKAVTAQKFMTQ
Ga0187891_10007921	3300017996	Peatland	RNHASTADRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0187891_10041291	3300017996	Peatland	NRNHASTADRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0187888_10847403	3300018008	Peatland	RNHASTADRRARQKSAAMSMLQRSNRKAAAAQKYVTQ
Ga0187888_13375321	3300018008	Peatland	PELDRYHASTIDRRSRKKPAAMSLMQRSNLRTVAAQKLMTQ
Ga0187860_10174725	3300018014	Peatland	RNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0187872_102468801	3300018017	Peatland	HASTADRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0187885_102049791	3300018025	Peatland	ATARTSYPELNRNHASTADRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0187869_103344461	3300018030	Peatland	RNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0187862_103395871	3300018040	Peatland	LNCNHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ
Ga0187871_102118771	3300018042	Peatland	NCNHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ
Ga0187871_104359731	3300018042	Peatland	NHASTADRRARQKPAAMSMLQRSNHRTVATQKYVTQ
Ga0184635_103356512	3300018072	Groundwater Sediment	PKLDRNHAPTADRRARQKPAAMSMLQCSKRRTLAAHKFVTQ
Ga0210401_108838692	3300020583	Soil	LDRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ
Ga0224555_10472961	3300023088	Soil	KLNRNHASTTDRRARQKPAAMSMLQRSNRKAAAAQKYVTQ
Ga0228598_10108511	3300024227	Rhizosphere	CTASHPELDRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ
Ga0209641_103461503	3300025322	Soil	KLNRNHASTADRRARQKPAAMSMLQCSDRRTVAAQKFVTQ
Ga0208455_10135491	3300025453	Peatland	LDRNHASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0208455_10612061	3300025453	Peatland	RNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ
Ga0208850_10071301	3300025457	Arctic Peat Soil	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQIFVTQ
Ga0208850_10345441	3300025457	Arctic Peat Soil	RNHASTADRRARQKPAAMSMLQCSNRSTVAAQKFVTQ
Ga0208688_10343492	3300025480	Peatland	HASTIDRRSRKKPAAMSLLQCSNLRTIAAQKFMTQ
Ga0208079_100019934	3300025481	Arctic Peat Soil	KLNRNHASTADRRARQKPAAMSMLQRSNRRTVAAQQFVTQ
Ga0208079_10009861	3300025481	Arctic Peat Soil	NHASTADRRARQKPAAMSMLQCSNRSTVAAQQYVTQ
Ga0208079_10319011	3300025481	Arctic Peat Soil	HASTADRRARQKPAAMSMLQCSNRSTVAAQQFMTQ
Ga0208715_10090621	3300025482	Arctic Peat Soil	ATARASHPKLNRNHASTADRRARQKPAAMSMLQCSNRSTVAAQQFVTQ
Ga0208587_10168394	3300025484	Arctic Peat Soil	NHTSTADRRARQKPAAMSTLQRSNRRTVAAQQFMTQ
Ga0208191_10836941	3300025496	Peatland	ATARASHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0208937_10132964	3300025506	Peatland	ELDRNHASTADRRSRKKPAAMSLLQCSNLRTVAAQKFMTQ
Ga0209124_102004733	3300025852	Arctic Peat Soil	LNRNHASTADRRARQKPAAMSMLQRSNRRTVAAQNYVTQ
Ga0209014_100667831	3300025857	Arctic Peat Soil	NRNHTSTADRRARQKPAAMSTLQRSNRRTVAAQQFVTQ
Ga0207681_118087492	3300025923	Switchgrass Rhizosphere	LDRDHASTIDRRTRQKPATMSMLQFCNRKTVTARKFMTQ
Ga0209913_10428452	3300026272	Soil	RNHASTADRRARQKPAAMSMLQRSNRRTVAPQKYVTQ
Ga0209622_10189831	3300027502	Forest Soil	KLDRNHASTIDRRARQKLATMSMLQLRNRKTVTAQKFMTQ
Ga0208827_11547841	3300027641	Peatlands Soil	PELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0209517_103581053	3300027854	Peatlands Soil	RTSHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0209380_108430991	3300027889	Soil	AATARASHPNSIATMSAIDRRARQKPTTVPMLQLCDRKAITAQKLMTQ
Ga0209067_101888542	3300027898	Watersheds	LDRNHASTIDRRARQKPATMSVLQLCNRKTVTAQKLMTQ
Ga0316363_101655053	3300030659	Peatlands Soil	GSAATARTSHPELDRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0310686_1038793561	3300031708	Soil	DRNHASTADRRARQKPATMSVLQLCNRKAATPQKFMTQ
Ga0311301_101645517	3300032160	Peatlands Soil	ARASHPELDRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKLMTQ
Ga0311301_101948525	3300032160	Peatlands Soil	HASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ
Ga0311301_106870152	3300032160	Peatlands Soil	HASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ
Ga0311301_110379842	3300032160	Peatlands Soil	DRNHASTADRRSRKNPVAMSLLQCANRRTVAAQKFMTQ
Ga0311301_114345651	3300032160	Peatlands Soil	DRNHASTADRRSRKKPAAMSLLQLCNRKTVTAQKFMTQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083094

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences