Metagenome Family F083125

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083125
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	41 residues
Representative Sequence	FLPILVRQRDHARDHGQTDRAALFDGLIQRAETGPATTERS
Number of Associated Samples	101
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.77 %
% of genes near scaffold ends (potentially truncated)	96.46 %
% of genes from short scaffolds (< 2000 bps)	93.81 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.796 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.053 % of family members)
Environment Ontology (ENVO)	Unclassified (44.248 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (37.168 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.03% β-sheet: 0.00% Coil/Unstructured: 57.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00582	Usp	3.54
PF00196	GerE	1.77
PF01564	Spermine_synth	1.77
PF05598	DUF772	0.88
PF13020	NOV_C	0.88
PF00903	Glyoxalase	0.88
PF13602	ADH_zinc_N_2	0.88
PF07992	Pyr_redox_2	0.88
PF14870	PSII_BNR	0.88
PF08450	SGL	0.88
PF03992	ABM	0.88
PF00005	ABC_tran	0.88
PF09137	Glucodextran_N	0.88
PF13384	HTH_23	0.88
PF13649	Methyltransf_25	0.88
PF00753	Lactamase_B	0.88
PF12697	Abhydrolase_6	0.88
PF12006	DUF3500	0.88
PF13160	DUF3995	0.88
PF13365	Trypsin_2	0.88
PF13443	HTH_26	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.88
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.88
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.80 %
Unclassified	root	N/A	29.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.80 %
Unclassified	root	N/A	29.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.80 %
Unclassified	root	N/A	29.20 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	65.49 %
Unclassified	root	N/A	29.20 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.72 %
Unclassified	root	N/A	29.20 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.66 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5.31 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.54 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.77 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.88 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	4.42 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.54 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.88 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	4.42 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.54 %
Rugosimonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora	0.88 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.88 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.88 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.20 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	4.42 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.54 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	0.88 %
Rugosimonospora africana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana	0.88 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.88 %
Mycobacterium kansasii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459024\|GZTSFBX01EC393	Not Available	503	Open in IMG/M
3300002914\|JGI25617J43924_10351912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300004479\|Ga0062595_100250137	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300005332\|Ga0066388_100564941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1765	Open in IMG/M
3300005341\|Ga0070691_10054565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1913	Open in IMG/M
3300005436\|Ga0070713_100480868	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300005439\|Ga0070711_101390875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300005471\|Ga0070698_100536867	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300005577\|Ga0068857_100055774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3506	Open in IMG/M
3300005591\|Ga0070761_10334973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	915	Open in IMG/M
3300005952\|Ga0080026_10132870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	711	Open in IMG/M
3300006173\|Ga0070716_101140526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	623	Open in IMG/M
3300006175\|Ga0070712_100893401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	766	Open in IMG/M
3300006175\|Ga0070712_101969799	Not Available	512	Open in IMG/M
3300009012\|Ga0066710_101896168	Not Available	893	Open in IMG/M
3300009089\|Ga0099828_10875849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	803	Open in IMG/M
3300009174\|Ga0105241_12244804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300009792\|Ga0126374_10201209	Not Available	1260	Open in IMG/M
3300010043\|Ga0126380_10076594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1920	Open in IMG/M
3300010047\|Ga0126382_12538088	Not Available	500	Open in IMG/M
3300010326\|Ga0134065_10479718	Not Available	514	Open in IMG/M
3300010358\|Ga0126370_12107729	Not Available	554	Open in IMG/M
3300010361\|Ga0126378_13232211	Not Available	518	Open in IMG/M
3300010373\|Ga0134128_10345053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1664	Open in IMG/M
3300012200\|Ga0137382_10611805	Not Available	778	Open in IMG/M
3300012205\|Ga0137362_11774944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300012208\|Ga0137376_10209612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1687	Open in IMG/M
3300012210\|Ga0137378_10995634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	752	Open in IMG/M
3300012351\|Ga0137386_10631166	Not Available	771	Open in IMG/M
3300012353\|Ga0137367_11180814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300012359\|Ga0137385_10106681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	2481	Open in IMG/M
3300012923\|Ga0137359_11153372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300012951\|Ga0164300_11026266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300012986\|Ga0164304_10255630	Not Available	1177	Open in IMG/M
3300015373\|Ga0132257_103373831	Not Available	581	Open in IMG/M
3300016294\|Ga0182041_10221002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1523	Open in IMG/M
3300016319\|Ga0182033_11973363	Not Available	531	Open in IMG/M
3300016371\|Ga0182034_11737483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300016404\|Ga0182037_10854729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	787	Open in IMG/M
3300016422\|Ga0182039_12245187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300017657\|Ga0134074_1303062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	582	Open in IMG/M
3300017821\|Ga0187812_1001224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	8884	Open in IMG/M
3300017928\|Ga0187806_1225047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	643	Open in IMG/M
3300017943\|Ga0187819_10624060	Not Available	610	Open in IMG/M
3300017966\|Ga0187776_10585559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	775	Open in IMG/M
3300017974\|Ga0187777_10872463	Not Available	646	Open in IMG/M
3300017995\|Ga0187816_10262529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300018007\|Ga0187805_10583900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	527	Open in IMG/M
3300018012\|Ga0187810_10417654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	565	Open in IMG/M
3300018090\|Ga0187770_10894300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300018433\|Ga0066667_10330059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1202	Open in IMG/M
3300020581\|Ga0210399_10173899	All Organisms → cellular organisms → Bacteria	1786	Open in IMG/M
3300021401\|Ga0210393_10529049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rugosimonospora → Rugosimonospora africana	963	Open in IMG/M
3300021478\|Ga0210402_11696285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	558	Open in IMG/M
3300021479\|Ga0210410_10327786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1373	Open in IMG/M
3300025909\|Ga0207705_10035717	Not Available	3555	Open in IMG/M
3300025910\|Ga0207684_10539451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	998	Open in IMG/M
3300025915\|Ga0207693_10415626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1051	Open in IMG/M
3300025929\|Ga0207664_11117364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	704	Open in IMG/M
3300025938\|Ga0207704_11568749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300025982\|Ga0208139_1010212	Not Available	1002	Open in IMG/M
3300026217\|Ga0209871_1126821	Not Available	501	Open in IMG/M
3300026552\|Ga0209577_10197120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	1549	Open in IMG/M
3300031572\|Ga0318515_10713295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300031573\|Ga0310915_10512652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	852	Open in IMG/M
3300031640\|Ga0318555_10741119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300031668\|Ga0318542_10257928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	888	Open in IMG/M
3300031668\|Ga0318542_10613111	Not Available	568	Open in IMG/M
3300031679\|Ga0318561_10053931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2019	Open in IMG/M
3300031679\|Ga0318561_10338469	Not Available	825	Open in IMG/M
3300031680\|Ga0318574_10717018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300031681\|Ga0318572_10391906	Not Available	825	Open in IMG/M
3300031682\|Ga0318560_10392814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300031708\|Ga0310686_108428707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	779	Open in IMG/M
3300031708\|Ga0310686_110475693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	533	Open in IMG/M
3300031713\|Ga0318496_10709656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	555	Open in IMG/M
3300031713\|Ga0318496_10753505	Not Available	537	Open in IMG/M
3300031719\|Ga0306917_10925285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300031723\|Ga0318493_10871610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300031724\|Ga0318500_10616175	Not Available	551	Open in IMG/M
3300031724\|Ga0318500_10708564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300031736\|Ga0318501_10627872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300031753\|Ga0307477_11089174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300031765\|Ga0318554_10155315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1300	Open in IMG/M
3300031765\|Ga0318554_10433259	Not Available	745	Open in IMG/M
3300031769\|Ga0318526_10440700	Not Available	532	Open in IMG/M
3300031777\|Ga0318543_10538958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	523	Open in IMG/M
3300031779\|Ga0318566_10250311	Not Available	878	Open in IMG/M
3300031780\|Ga0318508_1106877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	780	Open in IMG/M
3300031798\|Ga0318523_10001887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7096	Open in IMG/M
3300031805\|Ga0318497_10456802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	715	Open in IMG/M
3300031835\|Ga0318517_10278797	All Organisms → cellular organisms → Bacteria → Terrabacteria group	755	Open in IMG/M
3300031894\|Ga0318522_10105053	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300031896\|Ga0318551_10504799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	694	Open in IMG/M
3300031912\|Ga0306921_12298875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300031942\|Ga0310916_10513999	Not Available	1020	Open in IMG/M
3300032009\|Ga0318563_10361587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	785	Open in IMG/M
3300032025\|Ga0318507_10244737	Not Available	778	Open in IMG/M
3300032025\|Ga0318507_10487307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300032039\|Ga0318559_10209477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M
3300032039\|Ga0318559_10305298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300032054\|Ga0318570_10133365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1104	Open in IMG/M
3300032059\|Ga0318533_10183289	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300032059\|Ga0318533_10818731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	683	Open in IMG/M
3300032060\|Ga0318505_10559048	Not Available	538	Open in IMG/M
3300032066\|Ga0318514_10608919	Not Available	581	Open in IMG/M
3300032076\|Ga0306924_12255018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300032076\|Ga0306924_12277213	Not Available	550	Open in IMG/M
3300032089\|Ga0318525_10439829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300032261\|Ga0306920_101419447	Not Available	994	Open in IMG/M
3300032261\|Ga0306920_103131122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	621	Open in IMG/M
3300032828\|Ga0335080_10341565	Not Available	1617	Open in IMG/M
3300032896\|Ga0335075_10101960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3755	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.58%
Host-Associated	Host-Associated	4.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.27%
Aquatic	Environmental → Aquatic	5.31%
Plants	Host-Associated → Plants	4.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.27%
Freshwater	Environmental → Aquatic → Freshwater	5.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.57%
Loam	Environmental → Terrestrial → Soil → Loam	10.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.08%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.65%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.77%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025982	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_105 (SPAdes)	Environmental	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD1_08744870	2170459024	Grass Soil	VLVRQRDHARDHGQADRAALFDGLIQRAETGPATTTDTGRS
JGI25617J43924_103519122	3300002914	Grasslands Soil	RAGTEFLPILVRQRDHARDHSQPDRAALFDGLIQRAGTGPATTERS*
Ga0062595_1002501372	3300004479	Soil	VSCGTEFLPILIRQRDHARHHGQAGRAALFDGLIQRAETERS*
Ga0066388_1005649411	3300005332	Tropical Forest Soil	QFLPILVRQRDHARDHGQAGRAALFDGLIQRAEARPATTDTGRS*
Ga0070691_100545651	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	PVLVRQRDHARDHGQADRAALFDRLVQHAQAGPATTERS*
Ga0070713_1004808681	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	FLPVLVRQRDHARGHGQPDRAALFDGLIQRAKASPATTERS*
Ga0070711_1013908751	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RTGTEFLPVLVRQRDHARDHGQADRAALFDGLIQRAGTGPATTERS*
Ga0070698_1005368671	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	TEFLPVLVRQRDHARDHGQPDRAALFDGLIQRAGAGPATTERS*
Ga0068857_1000557745	3300005577	Corn Rhizosphere	FRTGTEFLPVLVRQRDHARDHGQADRAALFDRLVQHAQAGPATTERS*
Ga0070761_103349733	3300005591	Soil	TRQRDHARDHGQADRATLFDGLIKRAEAGPATTDTGRS*
Ga0080026_101328702	3300005952	Permafrost Soil	TGTQFLPILTRQRDHARDHDQADRAALLDGLIQRAGAGPATTEQS*
Ga0070716_1011405261	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AYFRTGTEFLPILVRQRDHARDHGQPGRAALFDGLIQHAEAGPATTERS*
Ga0070712_1008934013	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LVRQRDHARDHGQPDRTALFDGLIQRAEAGPATPEGS*
Ga0070712_1019697991	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RQRDHARDHGQADRAALFDGLIHRAEAGPGTTDTGRS*
Ga0066710_1018961681	3300009012	Grasslands Soil	FRTSTQFLPILARQRDHARDHGQAERTALSGGLIQHAQTERS
Ga0099828_108758491	3300009089	Vadose Zone Soil	FLPILTRQRDHARDHGQADRAALFDGLIQRAEAAPATTGRS*
Ga0105241_122448042	3300009174	Corn Rhizosphere	FLPILIRQRDHARDHSQADRAALFDGLIQRAETGPATTGRS*
Ga0126374_102012093	3300009792	Tropical Forest Soil	HTGTQFLPILTRQRDHAQDHGQADRAALFEGLIQRAATERS*
Ga0126380_100765944	3300010043	Tropical Forest Soil	QFLPILARQRDHAQEHGQTERAALFEGLIQRAGRETP*
Ga0126382_125380882	3300010047	Tropical Forest Soil	TKFLPILTRQRDHARDHGQADRAALFDRAALFDGLIQRAGTGPASTERS*
Ga0134065_104797182	3300010326	Grasslands Soil	RTSTQFLPILACQRDHARDHGQAERTALFDGLIQQAQTERS*
Ga0126370_121077292	3300010358	Tropical Forest Soil	GPQFLPILTRQRDHAQDHGQADRAALFEELIQRAATERS*
Ga0126378_132322112	3300010361	Tropical Forest Soil	GTEFLPILTRQRDHARGHGQAERAALFDRLIQRAETERS*
Ga0134128_103450531	3300010373	Terrestrial Soil	YFRTGTEFLPILIRQRDHARDHGQPGRAALFDGLIQRAQTGPDTTGRS*
Ga0137382_106118051	3300012200	Vadose Zone Soil	RQRDHARDHGQASRAVLFDGLIQRAEAGPATTERS*
Ga0137362_117749441	3300012205	Vadose Zone Soil	FLPILVRQRDHARDHGQPDRAALFDGLIQRAGTGPATTGRS*
Ga0137376_102096121	3300012208	Vadose Zone Soil	TQFLLILVRQRDRAVNLGEAERAALFDGLIQHARTTEGS*
Ga0137378_109956343	3300012210	Vadose Zone Soil	VQFLPTLTRQRDHARDHGQTERAALFDGLIQRADTEES*
Ga0137386_106311663	3300012351	Vadose Zone Soil	RQRDHARDHGQTDRAALFDGLIQRAEAGPATTERS*
Ga0137367_111808142	3300012353	Vadose Zone Soil	TGTEFLPILVRQRDHARDHGQTDRAALFDGLVQHAGAGLATTERS*
Ga0137385_101066811	3300012359	Vadose Zone Soil	LPILTRQRDHAQDHGQNDRAALFDDLIQRASTDRS*
Ga0137359_111533723	3300012923	Vadose Zone Soil	GAPQFLPILVRQRDHARDHGQTDRATLFEGLIQRAEAGPATTERS*
Ga0164300_110262662	3300012951	Soil	FLPVLVRQRDHARDHGQADRAALFDGLIQRAEAGPATTEGS*
Ga0164304_102556301	3300012986	Soil	IRQRDHARDHGQTDRAALFDGLIHRAEAGPATTEGS*
Ga0132257_1033738312	3300015373	Arabidopsis Rhizosphere	TGTQFLPILTRQRDHARNHGQAERAALFDGLIQHAETERS*
Ga0182041_102210023	3300016294	Soil	TQLLPILVRQRDHARDHGQADRAALFDGLIHRAQAGPATTERS
Ga0182033_119733632	3300016319	Soil	FRTGTDFLPVLVRQPDYARGHGQADRAALFDGLIQRAETGPATTGRS
Ga0182034_117374831	3300016371	Soil	RTGTEFLPILVRQRDHARDHGQAGRAALFDGLIQRAETGPAATERS
Ga0182037_108547292	3300016404	Soil	TQFLPILVRQRDHARDHGQTDRAALFDGLIHRAETERS
Ga0182039_122451871	3300016422	Soil	TEFLPILVRQRDHARDHGQAGRAALFDGLIQRAETGPAATERS
Ga0134074_13030621	3300017657	Grasslands Soil	LPILTRQRDHAQDHGQADRAALFEGLIQRAATERS
Ga0187812_10012241	3300017821	Freshwater Sediment	TCACFRTGTEFLPILVRQRDHARDHSQADRAALFDGLIKRAEAGPATTERS
Ga0187806_12250471	3300017928	Freshwater Sediment	TEFLPILVHQRDHARDHGQADRAALFDGLIQRAEAGPATTERS
Ga0187819_106240601	3300017943	Freshwater Sediment	LVHQRDHARDHGQADRAALFDGLIQRAGTGPATTDTGRS
Ga0187776_105855591	3300017966	Tropical Peatland	TGAEFLPVLVRQRDQARDHGQADRAALFDGLIQRAGTGPATTDTGRS
Ga0187777_108724631	3300017974	Tropical Peatland	VLIRQRDHARDHGQAGRAALFDGLIQRAETGPATTERS
Ga0187816_102625293	3300017995	Freshwater Sediment	FLPILVRQRDHARDHGQTDRAALFDGLIQRAETGPATTERS
Ga0187805_105839001	3300018007	Freshwater Sediment	FRTGTQFLPILTRQRDHARDHGQNDRAELFDGLIQRTGTGPATTERS
Ga0187810_104176542	3300018012	Freshwater Sediment	GTEFLPILVRQRDHARDHGQTDRAALFDGLIQHAETGPATERS
Ga0187770_108943001	3300018090	Tropical Peatland	YFRTSTQFLPILARQRDHARDHGQTDRAALFDGLIQRAETDRS
Ga0066667_103300591	3300018433	Grasslands Soil	PILVRQRDHARDHGQPDRAALFDGLIQRTDTGPATTGRN
Ga0210399_101738994	3300020581	Soil	TRQRDHARDHGQTDRAALFDGLIQRAGTGPATTERS
Ga0210393_105290493	3300021401	Soil	LTRQRDHARDHGQADRTTLFDGLIQRAEAGPATTERS
Ga0210402_116962852	3300021478	Soil	FRTGTEFLPILIRQRDHARDHSQADRAALFDGLIQRAETGPATTGRS
Ga0210410_103277863	3300021479	Soil	TGTQFLPILVRQRDHARDHGQTDRATLFDGLIQRAEAGAPWHTRHLTRSPV
Ga0207705_100357171	3300025909	Corn Rhizosphere	FLPVLVRQRDHARDHGQADRAALFDRLVQHAQAGPATTERS
Ga0207684_105394512	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LITGTEFLPILVRQRDHDHADRAALFVGLIGRVSR
Ga0207693_104156263	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LVRQRDHARDHGQPDRTALFDGLIQRAEAGPATPEGS
Ga0207664_111173643	3300025929	Agricultural Soil	PVLVRQRDHARDHSQADRAALFDGLIQRAGAGPATTERS
Ga0207704_115687492	3300025938	Miscanthus Rhizosphere	FRTGTEFLPILIRQRDHARDHGQPGRAALFDGLIQHAEAGPATTERS
Ga0208139_10102123	3300025982	Rice Paddy Soil	QFLPVLTRQRDHARGHGQADRAALFDGLIQRAGTERS
Ga0209871_11268211	3300026217	Permafrost Soil	RQRDHARDHDQADRAALLDGLIQRAGAGPATTEQS
Ga0209577_101971203	3300026552	Soil	YFRTGTQFLPVLVRQRDHARDHDQAERAALFDGLIQRAETERS
Ga0318515_107132951	3300031572	Soil	FRTGTEFLPILVRQRDHARDHGQADRAALFDGLIQRAEAGPATTERS
Ga0310915_105126523	3300031573	Soil	FRTGTEFLPILVRQRDHARDHGQAGRAALFDGLIQRAETGPATTDTGRS
Ga0318555_107411191	3300031640	Soil	GTEFLPILVRQRDHARDHGQAGRAALFDGLIQRAETGPATTDTGRS
Ga0318542_102579281	3300031668	Soil	EFLPILVRQRDHARDHGQAGRAALFDGLIQPAGTGSATTERS
Ga0318542_106131113	3300031668	Soil	FRTGTQFLPILTRQRNHAHDHGQAGRAALFDGLIARAQTQRS
Ga0318561_100539311	3300031679	Soil	GTQFLPILIRQRDHARDHGQADRAVLFDGLIQRAQTERS
Ga0318561_103384693	3300031679	Soil	PILVRQRDHARDHGQAGRAALFDGLIQRAETGPATTDTGRS
Ga0318574_107170182	3300031680	Soil	GTEFLPILTRQRDHARDHGQTDRAALFDGLIQRAGAGPATTERS
Ga0318572_103919061	3300031681	Soil	AYFRTGTQFLPILTRQRDHARDHGQAERATLFDGLIQRAQTERS
Ga0318560_103928141	3300031682	Soil	TDFLPILVRQRDHARDHGQAGRAALFDGLIQRAETGPATTDTGRS
Ga0310686_1084287071	3300031708	Soil	FLPILVRQRDHARDHSQTDRAALFDGLIQRAGTGPATTGRS
Ga0310686_1104756931	3300031708	Soil	HRHRVPALLVRQRDHARDHGQAGRAALFDGLIQRAGTGPATTGRS
Ga0318496_107096563	3300031713	Soil	ETRAYFRTGTQFLPVLVRQRDHARDHGQADRAALFDELIQRAETTQES
Ga0318496_107535051	3300031713	Soil	VLVRQRDHARDHGQADRAALFDGLIQRAGAGPATTERS
Ga0306917_109252851	3300031719	Soil	TCAYFRTGPQFLPILTSQRDHAQDHGQADRAALFDGLIRRASTERS
Ga0318493_108716102	3300031723	Soil	AYFRTGTEFLPILIRQRDHARGHGQADRAALFDGLIQRAGAAPAATDTGRS
Ga0318500_106161752	3300031724	Soil	RTGTQFLPVLVRQRDHARGHGQADRAALFDGLIQRAETERS
Ga0318500_107085642	3300031724	Soil	FRTGPQFLPILTRQRDHAHDHGQPDRAALIDELIQRASTERS
Ga0318501_106278722	3300031736	Soil	FLPVLTRQRDHAQDHGQADRAALFEGLIQRAATERS
Ga0307477_110891741	3300031753	Hardwood Forest Soil	LIRQRDHARDHHQTDRAALFDGLIQRAETGPATTERS
Ga0318554_101553151	3300031765	Soil	LVRQRDHARDHGQAGRAALFDGLIQPAGTGSATTERS
Ga0318554_104332592	3300031765	Soil	GTQFLPVLVRQRDHARGHGQADRAALFDGLIQRAETERS
Ga0318526_104407002	3300031769	Soil	FRTGTQFLPILTRQRDHARDHGQATRAALFDGLIHRAETERS
Ga0318543_105389582	3300031777	Soil	FLPILTRQRDHAHDHGQPDRAALIDELIQRASTERS
Ga0318566_102503113	3300031779	Soil	PILVRQRDHARDHGQAGRAALFDGLIQPAGTGSATTERS
Ga0318508_11068771	3300031780	Soil	TGTQFLPILTRQRDHARDHGQAERAALFDGLIQRAETERS
Ga0318523_1000188711	3300031798	Soil	LPVLVRQRDHARDHGQAGRAALFDGLIQHAETGPAATERS
Ga0318497_104568023	3300031805	Soil	LPILTRQRDHAQDRGQADRAALFDGLIQRASTERS
Ga0318517_102787971	3300031835	Soil	QFLPVLVRQRDHARGHGQADRATLFDGLIQRAETERS
Ga0318522_101050533	3300031894	Soil	FLPILTRQRDHAQDHGQADRAALFEGLIQRAATERS
Ga0318551_105047993	3300031896	Soil	FLPILVRQRDHARDHGQAGRAALFDGLIQRAGAGPATTERS
Ga0306921_122988752	3300031912	Soil	TGTEFLPILIRQRDHARDHGQAGRAALFDGLIQRAGTGPATTGRS
Ga0310916_105139991	3300031942	Soil	RQRDHARDHGQAGRAALFDGLIQRAEAGPATTERS
Ga0318563_103615871	3300032009	Soil	LPVLVRQRDHARDHGQAGRAALFDGLIQRAETGPAATERS
Ga0318507_102447371	3300032025	Soil	RTGTQFLPILTRQRDHARDHGQAARAALFDGLIHRAETERS
Ga0318507_104873072	3300032025	Soil	QFLPILTRQRDHARDHGQNDRAALFDGLIQRAETGPATTGRS
Ga0318559_102094773	3300032039	Soil	FRTGTEFLPVLVRQRDHARGHGQADRAALFDGLIQRAGAGPATTGRS
Ga0318559_103052981	3300032039	Soil	TGFLPILVRQRDHARDHGQAGRAALFDGLIQRAEAGPSTTGRS
Ga0318570_101333653	3300032054	Soil	YFRTGTQFLPILTLQRDHAQDHGQADRAALFDELIQRAGTERS
Ga0318533_101832891	3300032059	Soil	CAYFRTGTEFLPVLVRQRDHARGHGQADRAALFDGLIQRAETERS
Ga0318533_108187312	3300032059	Soil	GTQFLPILTRQRDHARDHGQAERAALFDGLIQRAETERS
Ga0318505_105590483	3300032060	Soil	ILVRQRDHARDHGQAGRAALFDGLIQRAETGPATTDTGRS
Ga0318514_106089193	3300032066	Soil	TCAYFRTGTQFLPILTRQRNHARDHGQAGRAALFDGLIARAQTQRS
Ga0306924_122550182	3300032076	Soil	SACETCAYFRTGTQFLPILTLQRDHAQDHGQADRAALFDELIQRAGTERS
Ga0306924_122772131	3300032076	Soil	LPILTRQRDHAQDHGQADRAALFDELIQRASTERS
Ga0318525_104398292	3300032089	Soil	FRTGTEFLPILVRQRDHARDHGQADRAALFDGLIQRAETGPATTERS
Ga0306920_1014194473	3300032261	Soil	ILVRQRDHARDHGQAGRAALFDGLIQPAGTGSATTERS
Ga0306920_1031311221	3300032261	Soil	TGTEFLPILVRQRDHARGHGQADRAALFDGLIQRAETERS
Ga0335080_103415651	3300032828	Soil	TQFLPVLVRQRDHARDHGQAGRAALFDGLIQRAEAGPATTEGS
Ga0335075_101019605	3300032896	Soil	VIVSTQFLPILTRQRDHARDHGQTDRAALFDGLIQRAETGPATERS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083125

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences