NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F083266

Metagenome / Metatranscriptome Family F083266

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083266
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 53 residues
Representative Sequence MKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Number of Associated Samples 71
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 65.18 %
% of genes near scaffold ends (potentially truncated) 35.40 %
% of genes from short scaffolds (< 2000 bps) 83.19 %
Associated GOLD sequencing projects 59
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (78.761 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(34.513 % of family members)
Environment Ontology (ENVO) Unclassified
(68.142 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.611 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 83.02%    β-sheet: 0.00%    Coil/Unstructured: 16.98%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF11753DUF3310 9.73
PF13384HTH_23 1.77
PF03237Terminase_6N 1.77
PF05766NinG 1.77
PF14090HTH_39 0.88
PF12850Metallophos_2 0.88
PF05133Phage_prot_Gp6 0.88
PF09718Tape_meas_lam_C 0.88
PF02195ParBc 0.88


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A78.76 %
All OrganismsrootAll Organisms21.24 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10017856All Organisms → cellular organisms → Bacteria4240Open in IMG/M
3300000101|DelMOSum2010_c10031794All Organisms → Viruses → Predicted Viral2887Open in IMG/M
3300000101|DelMOSum2010_c10225236All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium609Open in IMG/M
3300000115|DelMOSum2011_c10062244Not Available1396Open in IMG/M
3300000115|DelMOSum2011_c10085265Not Available1082Open in IMG/M
3300000115|DelMOSum2011_c10195619Not Available566Open in IMG/M
3300000115|DelMOSum2011_c10222611Not Available514Open in IMG/M
3300004448|Ga0065861_1037242Not Available1510Open in IMG/M
3300004457|Ga0066224_1277353Not Available658Open in IMG/M
3300004461|Ga0066223_1205427All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium840Open in IMG/M
3300005913|Ga0075108_10231612Not Available631Open in IMG/M
3300006029|Ga0075466_1071228Not Available983Open in IMG/M
3300006029|Ga0075466_1148314Not Available605Open in IMG/M
3300006029|Ga0075466_1160729All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium573Open in IMG/M
3300006164|Ga0075441_10017335All Organisms → cellular organisms → Bacteria3006Open in IMG/M
3300006164|Ga0075441_10065991Not Available1415Open in IMG/M
3300006382|Ga0075494_1000228All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio crassostreae1347Open in IMG/M
3300006399|Ga0075495_1617271Not Available527Open in IMG/M
3300006484|Ga0070744_10043064All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1327Open in IMG/M
3300006803|Ga0075467_10367312Not Available754Open in IMG/M
3300006803|Ga0075467_10479158Not Available641Open in IMG/M
3300006803|Ga0075467_10623361Not Available551Open in IMG/M
3300006803|Ga0075467_10682112Not Available523Open in IMG/M
3300006920|Ga0070748_1261862Not Available620Open in IMG/M
3300006920|Ga0070748_1273190Not Available604Open in IMG/M
3300006920|Ga0070748_1333387Not Available536Open in IMG/M
3300006947|Ga0075444_10045455Not Available2106Open in IMG/M
3300007074|Ga0075110_1000430Not Available21122Open in IMG/M
3300007229|Ga0075468_10056227Not Available1324Open in IMG/M
3300007538|Ga0099851_1095065Not Available1138Open in IMG/M
3300007540|Ga0099847_1098341Not Available892Open in IMG/M
3300007540|Ga0099847_1225116Not Available543Open in IMG/M
3300007540|Ga0099847_1250941All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium508Open in IMG/M
3300007542|Ga0099846_1139936Not Available875Open in IMG/M
3300007552|Ga0102818_1082459All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium635Open in IMG/M
3300007555|Ga0102817_1008205All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae2411Open in IMG/M
3300008961|Ga0102887_1166892Not Available678Open in IMG/M
3300009052|Ga0102886_1135627Not Available737Open in IMG/M
3300009086|Ga0102812_10054296All Organisms → Viruses → Predicted Viral2227Open in IMG/M
3300009436|Ga0115008_10392340Not Available985Open in IMG/M
3300009436|Ga0115008_10579189Not Available807Open in IMG/M
3300009436|Ga0115008_11255300Not Available564Open in IMG/M
3300010316|Ga0136655_1103401Not Available860Open in IMG/M
3300010316|Ga0136655_1147036Not Available704Open in IMG/M
3300010368|Ga0129324_10132288Not Available1052Open in IMG/M
3300010368|Ga0129324_10173572Not Available887Open in IMG/M
3300010368|Ga0129324_10200391Not Available811Open in IMG/M
3300010368|Ga0129324_10245714Not Available715Open in IMG/M
3300010368|Ga0129324_10382164All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium545Open in IMG/M
3300012969|Ga0129332_1000258Not Available1135Open in IMG/M
3300013010|Ga0129327_10429488Not Available705Open in IMG/M
3300013010|Ga0129327_10536304Not Available638Open in IMG/M
3300013010|Ga0129327_10743017Not Available553Open in IMG/M
3300017697|Ga0180120_10232516Not Available754Open in IMG/M
3300017697|Ga0180120_10253868Not Available714Open in IMG/M
3300017697|Ga0180120_10264358Not Available695Open in IMG/M
3300017697|Ga0180120_10426740Not Available518Open in IMG/M
3300017719|Ga0181390_1036556All Organisms → Viruses → Predicted Viral1505Open in IMG/M
3300017742|Ga0181399_1013882All Organisms → Viruses → Predicted Viral2309Open in IMG/M
3300017749|Ga0181392_1043054All Organisms → Viruses → Predicted Viral1397Open in IMG/M
3300017749|Ga0181392_1080766Not Available980Open in IMG/M
3300020166|Ga0206128_1002825Not Available15163Open in IMG/M
3300021375|Ga0213869_10007316Not Available6855Open in IMG/M
3300021375|Ga0213869_10044159Not Available2350Open in IMG/M
3300021375|Ga0213869_10118708Not Available1267Open in IMG/M
3300021389|Ga0213868_10315652Not Available890Open in IMG/M
3300021957|Ga0222717_10736441Not Available500Open in IMG/M
3300021959|Ga0222716_10076621All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae2307Open in IMG/M
3300022053|Ga0212030_1024139Not Available830Open in IMG/M
3300022053|Ga0212030_1053582Not Available573Open in IMG/M
3300022072|Ga0196889_1039281Not Available939Open in IMG/M
3300022164|Ga0212022_1009980Not Available1321Open in IMG/M
3300022164|Ga0212022_1059029Not Available591Open in IMG/M
3300022169|Ga0196903_1012812Not Available1033Open in IMG/M
3300022169|Ga0196903_1027231Not Available680Open in IMG/M
3300022169|Ga0196903_1039248Not Available552Open in IMG/M
3300022178|Ga0196887_1106824Not Available618Open in IMG/M
3300022822|Ga0222646_106972All Organisms → cellular organisms → Bacteria1734Open in IMG/M
3300022837|Ga0222711_1025548Not Available759Open in IMG/M
3300022839|Ga0222649_1020111Not Available872Open in IMG/M
3300022848|Ga0222674_1059338Not Available611Open in IMG/M
3300022853|Ga0222652_1009009All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Psychrobacter phage pOW20-A2026Open in IMG/M
(restricted) 3300024062|Ga0255039_10313780Not Available670Open in IMG/M
3300024346|Ga0244775_10003301Not Available17213Open in IMG/M
3300024348|Ga0244776_10594181Not Available699Open in IMG/M
(restricted) 3300024520|Ga0255047_10354496Not Available741Open in IMG/M
(restricted) 3300024529|Ga0255044_10222052Not Available751Open in IMG/M
3300025266|Ga0208032_1065344Not Available797Open in IMG/M
3300025276|Ga0208814_1040292Not Available1419Open in IMG/M
3300025483|Ga0209557_1071106Not Available796Open in IMG/M
3300025508|Ga0208148_1018795Not Available1986Open in IMG/M
3300025508|Ga0208148_1065691Not Available855Open in IMG/M
3300025543|Ga0208303_1053306Not Available974Open in IMG/M
3300025543|Ga0208303_1057188Not Available926Open in IMG/M
3300025543|Ga0208303_1059297Not Available903Open in IMG/M
3300025570|Ga0208660_1058109Not Available941Open in IMG/M
3300025645|Ga0208643_1009223All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae3879Open in IMG/M
3300025645|Ga0208643_1161605Not Available558Open in IMG/M
3300025645|Ga0208643_1185415Not Available502Open in IMG/M
3300025655|Ga0208795_1161557Not Available551Open in IMG/M
3300025887|Ga0208544_10226342Not Available760Open in IMG/M
3300027672|Ga0209383_1004808All Organisms → cellular organisms → Bacteria7214Open in IMG/M
3300027704|Ga0209816_1089646Not Available1230Open in IMG/M
3300027751|Ga0208304_10246028Not Available635Open in IMG/M
3300027833|Ga0209092_10022881All Organisms → Viruses → Predicted Viral4161Open in IMG/M
3300027833|Ga0209092_10150499Not Available1343Open in IMG/M
3300027833|Ga0209092_10582451All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes562Open in IMG/M
(restricted) 3300027861|Ga0233415_10398991Not Available659Open in IMG/M
3300028287|Ga0257126_1052706All Organisms → Viruses → Predicted Viral1667Open in IMG/M
3300031519|Ga0307488_10009054Not Available8101Open in IMG/M
3300031519|Ga0307488_10681954Not Available584Open in IMG/M
3300032277|Ga0316202_10177035Not Available990Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous34.51%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient12.39%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine6.19%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine6.19%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.31%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater5.31%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater4.42%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine4.42%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water4.42%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.65%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.77%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.77%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.77%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.77%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.77%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake1.77%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.89%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.89%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.89%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.89%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005913Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006382Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006399Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007074Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8EnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007552Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571EnvironmentalOpen in IMG/M
3300007555Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555EnvironmentalOpen in IMG/M
3300008961Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02EnvironmentalOpen in IMG/M
3300009052Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300012969Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022822Saline water microbial communities from Ace Lake, Antarctica - #293EnvironmentalOpen in IMG/M
3300022837Saline water microbial communities from Ace Lake, Antarctica - #1699EnvironmentalOpen in IMG/M
3300022839Saline water microbial communities from Ace Lake, Antarctica - #337EnvironmentalOpen in IMG/M
3300022848Saline water microbial communities from Ace Lake, Antarctica - #866EnvironmentalOpen in IMG/M
3300022853Saline water microbial communities from Ace Lake, Antarctica - #371EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300024529 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21EnvironmentalOpen in IMG/M
3300025266Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025887Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027704Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027751Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1001785683300000101MarineMKHSLSYNQIKQIEEAAEIKQENRLGIIAAIVLFSLYCIVSTMEYNDCLKGVC*
DelMOSum2010_1003179463300000101MarineMKHSLSYSQLNEIDQAAEIKKDNRMGIIAAVVLFSLYCLVSTMDYNDCLKGVC*
DelMOSum2010_1022523613300000101MarineMNKHSLSYSQLNQIDQAAEVKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
DelMOSum2011_1006224433300000115MarineMKHSLSYSQLNKIEQAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC*
DelMOSum2011_1008526523300000115MarineMKHSLSYSQLNQIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
DelMOSum2011_1019561923300000115MarineNKGNNMKHSLSYSQLNKIEQAAEIKKDNRTGILAAVVLFSLYCMASTMEYNDCLKGVC*
DelMOSum2011_1022261113300000115MarineMKHLLSYSQLNQIDQAAKIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0065861_103724243300004448MarineMKHSLSYSQLNQIDQAAEIKKDNRLGILAAVVLFSLYCIASTMEYNDCLKGVC*
Ga0066224_127735323300004457MarineMKHSLSYSQLNQIDQAAEIKKDNRLGILAAVVLFSLYCIASTMEYN
Ga0066223_120542723300004461MarineMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCIASTIEFNDCLKGVC*
Ga0075108_1023161223300005913Saline LakeMSYNQIKAIDKAEELKNDNRMGILAAVVLFGLYCMASTMEFNDCLKGIC*
Ga0075466_107122823300006029AqueousMKHSLSYSQLNQIDEAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0075466_114831413300006029AqueousMKHSLSYSQLNKIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0075466_116072933300006029AqueousMNRHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0075441_1001733523300006164MarineMKHSLSYSQLNQIDQAAEFKKDNRMGIIAAVVLLSLYCMASTMEFNDCLKGIC*
Ga0075441_1006599133300006164MarineMKQGNNMKHSLSYSQLNQIDQAAEVKKDNRMGIIAAVVLFSLYCMASTMEFNDCLKGIC*
Ga0075494_100022843300006382AqueousSLSYSQLNQIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0075495_161727113300006399AqueousYIMKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0070744_1004306423300006484EstuarineMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0075467_1036731233300006803AqueousLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGIC*
Ga0075467_1047915823300006803AqueousMKHSLSYSQLNQIDQAAKIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0075467_1062336113300006803AqueousMNEIDRAKEVKQDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0075467_1068211233300006803AqueousMKHSLSYSQLNKIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCL
Ga0070748_126186213300006920AqueousLHLIQRNRGYIMKHSLSYSQLNQIDQAAEIKKDNRMSIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0070748_127319013300006920AqueousMKHSLSYSQLNQIDEAAEIKKENRIGIIAAVVLFSLYCIVSTMEYNDCLKGVC*
Ga0070748_133338723300006920AqueousMNEIDRAKEVKQDNRMGILAAMVLFSLYCMASTMEYNDCLKGVC*
Ga0075444_1004545533300006947MarineMKHSLSYSQLNQIDQAAEVKKDNRMGIIAAVVLFSLYCAASTMEFNDCLKGIC*
Ga0075110_100043073300007074Saline LakeMKHDMSYNQIKAIDKAEELKNDNRMGILAAVVLFGLYCMASTMEFNDCLKGIC*
Ga0075468_1005622733300007229AqueousMSLHSKNKGNIMKHSLSYNQIKQIEEAAEIKQENRLGIIAAIVLFSLYCIVSTMEYNDCLKGVC*
Ga0099851_109506533300007538AqueousIQRNRGYIMKHSLSYSQLNQIDQAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0099847_109834123300007540AqueousMKHSLSYSQLNKIEQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0099847_122511623300007540AqueousAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0099847_125094113300007540AqueousMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYND
Ga0099846_113993633300007542AqueousHLIQRNRGYIMKHSLSYSQLNKIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0102818_108245923300007552EstuarineMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGLC*
Ga0102817_100820573300007555EstuarineLLQSGGGVMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0102887_116689223300008961EstuarineMLLKPTYKGDDMKHSLSYSQLNKIDQAAEVKKENRMGIIAALVLFSLYCMASTMEYNDCLKGVC*
Ga0102886_113562723300009052EstuarineMKHSLSYSQLNKIDQAAEVKKENRMGIIAALVLFSLYCMASTMEYNDCLKGVC*
Ga0102812_1005429663300009086EstuarineMNKHSLSYSQLNKIDEAAEVKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0115008_1039234043300009436MarineMLLKPTYKGDDMKHSLSYSQLNKIDQAAEVKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0115008_1057918923300009436MarineMKHSLSYSQLNQIDQAAEVKKNNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0115008_1125530033300009436MarineMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEY
Ga0136655_110340133300010316Freshwater To Marine Saline GradientMKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGIC*
Ga0136655_114703613300010316Freshwater To Marine Saline GradientIMKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0129324_1013228813300010368Freshwater To Marine Saline GradientKHSLSYSQLNQIVQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0129324_1017357213300010368Freshwater To Marine Saline GradientRNRGYIMKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0129324_1020039133300010368Freshwater To Marine Saline GradientHLIQRNRGYIMKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGIC*
Ga0129324_1024571423300010368Freshwater To Marine Saline GradientMKHSLSYSQLNKIEKAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0129324_1038216433300010368Freshwater To Marine Saline GradientMNKHLLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0129332_100025833300012969AqueousGYIMKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0129327_1042948813300013010Freshwater To Marine Saline GradientMKHSLSYSQLNKIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKG
Ga0129327_1053630433300013010Freshwater To Marine Saline GradientMKHSLSYSQLNQIDEAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0129327_1074301713300013010Freshwater To Marine Saline GradientQLNKIEQAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC*
Ga0180120_1023251633300017697Freshwater To Marine Saline GradientLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGIC
Ga0180120_1025386813300017697Freshwater To Marine Saline GradientMKHSLSYSQLNQIDQAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC
Ga0180120_1026435813300017697Freshwater To Marine Saline GradientMKHSLSYSQLNQIDEAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0180120_1042674013300017697Freshwater To Marine Saline GradientAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC
Ga0181390_103655633300017719SeawaterMRIFQMLLMLLKPTYKGNNMKHSLSYSQLNKIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGLC
Ga0181399_101388253300017742SeawaterMRIFQMLLMLLKPTYKGNNMKHSLSYSQLNKIDQAAEVKKDNRMGIIAALVLFSLYCMASTMEYNDCLKGVC
Ga0181392_104305423300017749SeawaterMKHSLSYSQLNKIDQAAEVKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGLC
Ga0181392_108076613300017749SeawaterMRIFQMLLMLLKPTYKGNNMKHSLSYSQLNKIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKG
Ga0206128_1002825113300020166SeawaterMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCIASTMEYNDCLKGVC
Ga0213869_10007316133300021375SeawaterMKHSLSYSQLNKIEQAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC
Ga0213869_1004415943300021375SeawaterMKHSLSYSQLNQIDEAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0213869_1011870823300021375SeawaterMKHSLSYSQLNQIDQAAEIKKENRMGIIAAVVLFSLYCMVSTMEYNDCLKGVC
Ga0213861_1031275033300021378SeawaterMNEIDRAKEVKKDNRMGIIAAVVLFSLYCMVSTMEYND
Ga0213868_1031565223300021389SeawaterMKHSISYSQMNEIDRAKEVKKDNRMGIIAAVVLFSLYCMVSTMEYNDCLKGVC
Ga0222717_1073644113300021957Estuarine WaterSLSYSQINQIDQAAEVKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0222716_1007662173300021959Estuarine WaterMNKHSLSYSQINQIDQAAEVKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0212030_102413923300022053AqueousMKHSLSYSQLNQIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0212030_105358233300022053AqueousEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC
Ga0196889_103928133300022072AqueousMNRHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0212022_100998023300022164AqueousMKHSLSYNQIKQIEEAAEIKQENRLGIIAAIVLFSLYCIVSTMEYNDCLKGVC
Ga0212022_105902913300022164AqueousMSLHSKNKGNIMKHSLSYNQIKQIEEAAEIKQENRLGIIAAIVLFSLYCIVSTMEYNDCLKGVC
Ga0196903_101281233300022169AqueousLNQIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0196903_102723133300022169AqueousIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0196903_103924823300022169AqueousMKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKG
Ga0196887_110682413300022178AqueousMKHSLSYSQLNQIDQAAKIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0222646_10697263300022822Saline WaterMKHDMSYNQIKAIDKAEELKNDNRMGILAAVVLFGLYCMASTMEFNDCLKGIC
Ga0222711_102554833300022837Saline WaterGHSNKGNKMKHDMSYNQIKAIDKAEELKNDNRMGILAAVVLFGLYCMASTMEFNDCLKGI
Ga0222649_102011123300022839Saline WaterMKHDMNYNQIKAIDKAEELKNDNRMGILAAVVLFGLYCMASTMEFNDCLKGIC
Ga0222674_105933823300022848Saline WaterMSYNQIKAIDKAEELKNDNRMGILAAVVLFGLYCMASTMEFNDCLKGIC
Ga0222652_100900913300022853Saline WaterNQIKAIDKAEELKNDNRMGILAAVVLFGLYCMASTMEFNDCLKGIC
(restricted) Ga0255039_1031378013300024062SeawaterMKHSLSYSQINQIDKAAEVKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0244775_10003301253300024346EstuarineMNKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0244776_1059418133300024348EstuarineMRIFQMLLMLLKPTYKGDDMKHSLSYSQLNKIDQAAEVKKENRMGIIAALVLFSLYCMASTMEYNDCLKGVC
(restricted) Ga0255047_1035449633300024520SeawaterQMLLMLLKPTYKGNNMKHSLSYSQLNKIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
(restricted) Ga0255044_1022205233300024529SeawaterMNKHSLSYSQLNKIDKAAEVKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208032_106534433300025266Deep OceanEMKHSLSYSQLNQIDQAAEVKKDNRMGIIAAVVLFSLYCAASTMEFNDCLKGIC
Ga0208814_104029223300025276Deep OceanMKHSLSYSQLNQIDQAAEFKKDNRMGIIAAVVLLSLYCMASTMEFNDCLKGIC
Ga0209557_107110613300025483MarineAAEVKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208148_101879513300025508AqueousDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208148_106569123300025508AqueousMKHSLSYSQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208303_105330623300025543AqueousMKHLLSYSQLNKIEQAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208303_105718833300025543AqueousMKHSLSYSQLNKIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208303_105929733300025543AqueousMKHSLSYSQLNKIEKAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208660_105810913300025570AqueousMKHSLSYNQIKQIEEAAEIKQENRLGIIAAIVLFSLYCIVSTMEY
Ga0208643_1009223103300025645AqueousEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208643_116160533300025645AqueousMKHSLSYSQLNKIEQAAEIKKDNRMGILAAVVLFSLYCMASTMEYND
Ga0208643_118541523300025645AqueousQAAEIKKDNRMGILAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208795_116155713300025655AqueousSYSQLNKIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0208544_1022634213300025887AqueousQLNQIDQAAEIKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGIC
Ga0209383_100480893300027672MarineMKQGNNMKHSLSYSQLNQIDQAAEVKKDNRMGIIAAVVLFSLYCMASTMEFNDCLKGIC
Ga0209816_108964633300027704MarineMKHSLSYSQLNQIDQAAEVKKDNRMGIIAAVVLFSLYCAASTMEFNDCLKGIC
Ga0208304_1024602823300027751EstuarineMNKHSLSYSQLNKIDEAAEVKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0209092_1002288173300027833MarineMRIFQMLLMLLKPTYKGDDMKHSLSYSQLNKIDQAAEVKKDNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0209092_1015049933300027833MarineMKHSLSYSQLNQIDQAAEVKKNNRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0209092_1058245113300027833MarineMKHSLSYSQLNQIDQAAEVKKDNLMGIIAAVVLFSLYCMASTMEYNDCLKGVC
(restricted) Ga0233415_1039899123300027861SeawaterMNKHSLSYSQINKIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0257126_105270653300028287MarineMRIFQMLLMLLKPTYKGNNMKHSLSYSQLNKIDQAAEIKKENRMGIIAAVVLFSLYCMASTMEYNDCLKGVC
Ga0307488_10009054103300031519Sackhole BrineMNKHDMSYNQIKAIDKAEELKNDNRMGILAAVVLFGLYCMASTMEFNDCLKGIC
Ga0307488_1068195423300031519Sackhole BrineMKHSLSYSQLNQIDQAAEVKKDNRMGIIAAVVLFSLYCIASTMEYNDCLKGVC
Ga0316202_1017703513300032277Microbial MatMNKHSLSYSQINQIDQAAEVKQENRIGIIAAVVLFSLYCMASTMEYNDCLKGVC

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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