Metagenome / Metatranscriptome Family F083295

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083295
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	59 residues
Representative Sequence	LGNSARLSRLTVQAHDARARSLLDQIAEPLRVAARADALVLGPAGHPSGVDGITVGIAV
Number of Associated Samples	102
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.31 %
% of genes near scaffold ends (potentially truncated)	96.46 %
% of genes from short scaffolds (< 2000 bps)	88.50 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.062 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.779 % of family members)
Environment Ontology (ENVO)	Unclassified (19.469 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.248 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.54% β-sheet: 21.84% Coil/Unstructured: 58.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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SCOP family	SCOP domain	Representative PDB	TM-score
a.27.1.1: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	d1ffya1	1ffy	0.60299
d.151.1.0: automated matches	d2ei9a_	2ei9	0.59058
d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain	d1usya_	1usy	0.58213
d.79.2.0: automated matches	d3cb2a2	3cb2	0.57217
d.79.4.0: automated matches	d2v9ya1	2v9y	0.56881

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04909	Amidohydro_2	40.71
PF12802	MarR_2	7.08
PF10009	DUF2252	5.31
PF00400	WD40	1.77
PF01458	SUFBD	1.77
PF13565	HTH_32	0.88
PF13751	DDE_Tnp_1_6	0.88
PF01022	HTH_5	0.88
PF01243	Putative_PNPOx	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	1.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.75 %
Unclassified	root	N/A	38.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.77 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.75 %
Unclassified	root	N/A	38.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	41.59 %
Unclassified	root	N/A	38.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.88 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.88 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.88 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.88 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.88 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.88 %
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	0.88 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
unclassified Microbispora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora → unclassified Microbispora	0.88 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.88 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.88 %
Micromonospora echinospora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora echinospora	0.88 %
Streptomyces ipomoeae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces ipomoeae	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Frankia sp. Ea1.12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Ea1.12	0.88 %
Microbispora sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora → unclassified Microbispora → Microbispora sp.	0.88 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.88 %
Micromonospora echinospora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora echinospora	0.88 %
Streptomyces ipomoeae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces ipomoeae	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002914\|JGI25617J43924_10211814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	645	Open in IMG/M
3300005332\|Ga0066388_100726321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1596	Open in IMG/M
3300005337\|Ga0070682_101591423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300005434\|Ga0070709_10874117	Not Available	709	Open in IMG/M
3300005435\|Ga0070714_100165060	All Organisms → cellular organisms → Bacteria	2006	Open in IMG/M
3300005435\|Ga0070714_100402033	Not Available	1295	Open in IMG/M
3300005435\|Ga0070714_101211594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	736	Open in IMG/M
3300005436\|Ga0070713_101352051	Not Available	690	Open in IMG/M
3300005436\|Ga0070713_102160067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	539	Open in IMG/M
3300005439\|Ga0070711_101031819	Not Available	706	Open in IMG/M
3300005602\|Ga0070762_10596407	Not Available	733	Open in IMG/M
3300005712\|Ga0070764_10441642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300005712\|Ga0070764_11109549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300006034\|Ga0066656_10964300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300006163\|Ga0070715_10861441	Not Available	555	Open in IMG/M
3300006174\|Ga0075014_100556932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	649	Open in IMG/M
3300006175\|Ga0070712_101877904	Not Available	524	Open in IMG/M
3300006800\|Ga0066660_10859509	Not Available	739	Open in IMG/M
3300006806\|Ga0079220_12014948	Not Available	515	Open in IMG/M
3300009137\|Ga0066709_104287113	Not Available	520	Open in IMG/M
3300009148\|Ga0105243_11285225	Not Available	748	Open in IMG/M
3300009525\|Ga0116220_10006175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4736	Open in IMG/M
3300009525\|Ga0116220_10553331	Not Available	526	Open in IMG/M
3300009698\|Ga0116216_10075721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2070	Open in IMG/M
3300009700\|Ga0116217_11032391	Not Available	503	Open in IMG/M
3300009839\|Ga0116223_10686240	Not Available	588	Open in IMG/M
3300010360\|Ga0126372_12101908	Not Available	613	Open in IMG/M
3300010375\|Ga0105239_13501813	Not Available	510	Open in IMG/M
3300010379\|Ga0136449_103757496	Not Available	572	Open in IMG/M
3300010397\|Ga0134124_12694860	Not Available	540	Open in IMG/M
3300010876\|Ga0126361_10875593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	597	Open in IMG/M
3300010880\|Ga0126350_11293100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora → unclassified Microbispora → Microbispora sp.	839	Open in IMG/M
3300012206\|Ga0137380_10237663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1645	Open in IMG/M
3300012360\|Ga0137375_10124224	Not Available	2573	Open in IMG/M
3300013105\|Ga0157369_12419360	Not Available	532	Open in IMG/M
3300013297\|Ga0157378_10199726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1891	Open in IMG/M
3300014162\|Ga0181538_10281572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	908	Open in IMG/M
3300014201\|Ga0181537_10432451	Not Available	902	Open in IMG/M
3300016341\|Ga0182035_10089888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2219	Open in IMG/M
3300017926\|Ga0187807_1214652	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300017959\|Ga0187779_10526282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	785	Open in IMG/M
3300017973\|Ga0187780_10467365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	899	Open in IMG/M
3300017973\|Ga0187780_10531073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	842	Open in IMG/M
3300018007\|Ga0187805_10519216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300018085\|Ga0187772_10799823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	681	Open in IMG/M
3300020579\|Ga0210407_10733466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300020581\|Ga0210399_11363726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300021181\|Ga0210388_11099716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	678	Open in IMG/M
3300021404\|Ga0210389_11102068	Not Available	613	Open in IMG/M
3300021420\|Ga0210394_11401411	Not Available	594	Open in IMG/M
3300021433\|Ga0210391_10164951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1744	Open in IMG/M
3300021477\|Ga0210398_10750361	All Organisms → cellular organisms → Bacteria → PVC group	788	Open in IMG/M
3300021559\|Ga0210409_10996210	Not Available	712	Open in IMG/M
3300024288\|Ga0179589_10127092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1068	Open in IMG/M
3300025898\|Ga0207692_11200977	Not Available	504	Open in IMG/M
3300025906\|Ga0207699_10524041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	857	Open in IMG/M
3300025928\|Ga0207700_10765981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	863	Open in IMG/M
3300025939\|Ga0207665_10338443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1133	Open in IMG/M
3300025939\|Ga0207665_11608328	Not Available	515	Open in IMG/M
3300026295\|Ga0209234_1133011	Not Available	902	Open in IMG/M
3300026318\|Ga0209471_1198750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300026999\|Ga0207949_1011390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	806	Open in IMG/M
3300027031\|Ga0208986_1014893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	777	Open in IMG/M
3300027795\|Ga0209139_10262281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300027824\|Ga0209040_10142360	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300027855\|Ga0209693_10092505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1495	Open in IMG/M
3300027908\|Ga0209006_10092059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2694	Open in IMG/M
3300027911\|Ga0209698_11409714	Not Available	507	Open in IMG/M
3300028742\|Ga0302220_10014451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4019	Open in IMG/M
3300028773\|Ga0302234_10052529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1839	Open in IMG/M
3300028775\|Ga0302231_10150741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	970	Open in IMG/M
3300028789\|Ga0302232_10040767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2500	Open in IMG/M
3300028801\|Ga0302226_10099084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1300	Open in IMG/M
3300028906\|Ga0308309_11669583	Not Available	541	Open in IMG/M
3300029943\|Ga0311340_10550598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1019	Open in IMG/M
3300030054\|Ga0302182_10374277	Not Available	597	Open in IMG/M
3300030490\|Ga0302184_10402014	Not Available	532	Open in IMG/M
3300030509\|Ga0302183_10047732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1707	Open in IMG/M
3300030617\|Ga0311356_11506646	Not Available	608	Open in IMG/M
3300030618\|Ga0311354_11782461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora echinospora	535	Open in IMG/M
3300030739\|Ga0302311_10089903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2509	Open in IMG/M
3300031090\|Ga0265760_10178404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	708	Open in IMG/M
3300031546\|Ga0318538_10642490	Not Available	576	Open in IMG/M
3300031616\|Ga0307508_10573299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	728	Open in IMG/M
3300031679\|Ga0318561_10503015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	667	Open in IMG/M
3300031680\|Ga0318574_10833549	Not Available	540	Open in IMG/M
3300031708\|Ga0310686_107929278	Not Available	550	Open in IMG/M
3300031764\|Ga0318535_10007066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3802	Open in IMG/M
3300031779\|Ga0318566_10111141	Not Available	1349	Open in IMG/M
3300031782\|Ga0318552_10606964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces ipomoeae	558	Open in IMG/M
3300031796\|Ga0318576_10562455	Not Available	537	Open in IMG/M
3300031819\|Ga0318568_10704087	Not Available	628	Open in IMG/M
3300031832\|Ga0318499_10230598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	720	Open in IMG/M
3300031832\|Ga0318499_10369245	Not Available	551	Open in IMG/M
3300031846\|Ga0318512_10013056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3269	Open in IMG/M
3300031894\|Ga0318522_10040985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1609	Open in IMG/M
3300031896\|Ga0318551_10315870	Not Available	881	Open in IMG/M
3300031941\|Ga0310912_10251210	Not Available	1361	Open in IMG/M
3300031947\|Ga0310909_10537343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	979	Open in IMG/M
3300031962\|Ga0307479_10872851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	873	Open in IMG/M
3300032042\|Ga0318545_10378030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300032054\|Ga0318570_10134849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1098	Open in IMG/M
3300032055\|Ga0318575_10421809	Not Available	677	Open in IMG/M
3300032094\|Ga0318540_10026178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2484	Open in IMG/M
3300032094\|Ga0318540_10328708	Not Available	738	Open in IMG/M
3300032261\|Ga0306920_102791969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	665	Open in IMG/M
3300032783\|Ga0335079_10420493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1437	Open in IMG/M
3300032783\|Ga0335079_11494760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	667	Open in IMG/M
3300032895\|Ga0335074_10798503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Ea1.12	882	Open in IMG/M
3300032955\|Ga0335076_10072058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3401	Open in IMG/M
3300032955\|Ga0335076_10272466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1585	Open in IMG/M
3300033158\|Ga0335077_11884874	Not Available	559	Open in IMG/M
3300033806\|Ga0314865_026619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1464	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.58%
Host-Associated	Host-Associated	4.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.50%
Aquatic	Environmental → Aquatic	7.08%
Plants	Host-Associated → Plants	4.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.88%
Peat	Environmental → Terrestrial → Peat	10.62%
Freshwater	Environmental → Aquatic → Freshwater	5.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.54%
Sediment	Environmental → Aquatic → Sediment	1.77%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.90%
Loam	Environmental → Terrestrial → Soil → Loam	21.24%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.78%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.73%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.77%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25617J43924_102118142	3300002914	Grasslands Soil	SSQRLGNSVPLSHLIVQAHDAAAETLLDQIAEPLRIAARARAVIRGQAGHPSGVAGITVGIAV*
Ga0066388_1007263211	3300005332	Tropical Forest Soil	SGQRLGNSARLSQLIVQAHDERAAALLDQIGEPLRVAARADVLVRGPAEHPSGVPAITVGIIV*
Ga0070682_1015914231	3300005337	Corn Rhizosphere	NSARLSKLTVQAHDDAARSLLDQIAEPLRIAARADALVLAPAGHPSGVDGITVGIAV*
Ga0070709_108741171	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ARLSQLIVQAHDAQAGSLLDQIAEPLRVAARADAVVRGTASHPSGVDGITVGITV*
Ga0070714_1001650602	3300005435	Agricultural Soil	SQLIVQAHDEQAGSLLDQIAEPLRVAARADAVVRGTAGHPSGVDGITVGIAV*
Ga0070714_1004020332	3300005435	Agricultural Soil	ARLSRLTVQAHDARARSLLDQIAEPLRIAARADALVLGPAECPSGVDGIAVGITV*
Ga0070714_1012115941	3300005435	Agricultural Soil	RSGQRLGNSARLSQLIVQAHDARARSLLDQIAEPLRIAARADTVVRGIAGHPSGVAGITVGIAV*
Ga0070713_1013520511	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RLSKLTVQAHDAAARSLLDQIAEPLRIAARADALVLGPADHPSGVDGITVGIAV*
Ga0070713_1021600671	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RLGNSARLSKLTVQAHDDAARSLLDQIAEPLRIAARADALVLGPAGHPSGIDGITVGIAV
Ga0070711_1010318191	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RLGNSARLSQLIVQAHDAQAGSLLDQIAEPLRVAVRADAVVRGTASHPSGVDGITVGITV
Ga0070762_105964071	3300005602	Soil	VLTLQARTPAAEQLLTVIAEPLRVAARADAVVLGAAGHDSGVDGITVGIEPPAPDLRGK*
Ga0070764_104416422	3300005712	Soil	NSARLSQLIVQADDAQAQALLDQIAEPLRVAARAGAVVRGPAEHPSGVDGISVGIAV*
Ga0070764_111095492	3300005712	Soil	GTRLSVLTLQAHDEAARALLDQIAEPLRVAARADAVRFDEAGYPSGVDGVTVAIAV*
Ga0066656_109643002	3300006034	Soil	RLGNSARLSRLTVQAHDARARSLLDQIAEPLRVAARADALVLGPAGHPSGVDGITVGIAV
Ga0070715_108614411	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	QLIVQAHDAQAGSLLDQIAEPLRVAARADAVVRGTASHPSGVDGITVGITV*
Ga0075014_1005569322	3300006174	Watersheds	QRLGNSARLRELIVQPHNAQAEALLGRITEPLRIAARADAVVRGRAEHPSGVAGITVGITVLR*
Ga0070712_1018779042	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RALRSGLRLGNSARLSKLTVQAHDDDARSLLDQIAEPLRIAARADALVLGPAGHPSGVDGVTVGIAV*
Ga0066660_108595091	3300006800	Soil	RLSRLTVQAHDARARSLLDQIAEPLRVAARADALVLGSASHPSGVDGITVRIAV*
Ga0079220_120149481	3300006806	Agricultural Soil	LIVQAHDEQAGSLLDQIAEPLRVAARADAVVRGTAGHPSGVDGITVGIAV*
Ga0066709_1042871132	3300009137	Grasslands Soil	RSRLTAPAHAARPRSLLDQIAEPVRVAARADALVPGPASHPSGVDGITVGIAV*
Ga0105243_112852252	3300009148	Miscanthus Rhizosphere	RLSKLTVQAHDDAARSLLDQIAEPLRIAARADALVLGPAGHPSGIDGITVGIAV*
Ga0116220_100061755	3300009525	Peatlands Soil	VLRSGQRLGNSARLSQLIVQAHDARAQALLDQIAESLRIAARADAVVRGPAQQPSGIDGITVGIAV*
Ga0116220_105533311	3300009525	Peatlands Soil	ATRVLRSGQRLGNSARLGQLIVRAHDAQARALLEKIAEPLRIAVRADAVVRGPAEHASGVAGITVGITV*
Ga0116216_100757211	3300009698	Peatlands Soil	QLILQAHDARARALLDQIAEPLRVAARADAVVHGPAEQPSGIDGITVGIAV*
Ga0116217_110323911	3300009700	Peatlands Soil	RLGNSARLSQLILQARDAQAEALLAEIAEPLRLAARADTVVRGPAAHPSGVAGITVGIVA
Ga0116223_106862401	3300009839	Peatlands Soil	ATRVLRSGQRLGNSARLSQLILQGHDAPAQALLDQIAEPLRIAARADAVVRGPARQPSGIDGITVGIAV*
Ga0126372_121019082	3300010360	Tropical Forest Soil	GNSARLRSLTLQAHTPRAAALLEEIAEPLRLAARADAVVRGEADHPSGVAGITVAIGV*
Ga0105239_135018131	3300010375	Corn Rhizosphere	SKLTVQAHDDAARSLLDQIAEPLRIAARADALVLGPAGHPSGIDGITVGIAV*
Ga0136449_1037574962	3300010379	Peatlands Soil	NSARLSQLIVQAHDARAQALLDQIAEPLRVAARADAVVRGPAEHDSGVAGITVGIAV*
Ga0134124_126948602	3300010397	Terrestrial Soil	LTVQAHDADARSLLDRIAEPLRIAARADALVLGPADHPSGVDGITVGIAV*
Ga0126361_108755932	3300010876	Boreal Forest Soil	SARISQLIVQANTPAAEALLDQIGEPLRVAARAGALVRGPAEYPGGVAGITVGIAV*
Ga0126350_112931001	3300010880	Boreal Forest Soil	ATRVLRSAQRLGNSARLSQLIVQAHDDAARSLLDQIAEPLRIAARADTVVRGTAGHPSGIAGITVGIAV*
Ga0137380_102376631	3300012206	Vadose Zone Soil	GQRLGNSARLSRLTVQAHNAQARSLLGQIAEPLRVAARADTLVRGPAEHPSGVDGITVGIAV*
Ga0137375_101242244	3300012360	Vadose Zone Soil	ARLSRLTVQANDARARSLLDQIAEPLRVAARADALVLGPADHPSGVDGITVGIAV*
Ga0157369_124193601	3300013105	Corn Rhizosphere	SARLSKLTVQAHDDAARSLLDQIAEPLRIAARADALVLGPAGHPSGIDGITVGIAV*
Ga0157378_101997263	3300013297	Miscanthus Rhizosphere	DATLALLCGLLLVNSARLSKLTVQAHDADARSLLDRIAEPLRIAARADALILGPAGHPSGGDGITVGIAV*
Ga0181538_102815721	3300014162	Bog	LIVQAHDARAQALLDQIAEPLRIAARADAVVRAPAEHDSRVAGITVGIAI*
Ga0181537_104324511	3300014201	Bog	LIVQPHDEAARALLDQIAEPLRIAARADEVVRGPAEHPSGVAGITVGILA*
Ga0182035_100898883	3300016341	Soil	RLSKLIVQAHDAGARSLLDQIAEPLRVAARADALVLGPAEHPSGVSGITVGIAV
Ga0187807_12146522	3300017926	Freshwater Sediment	LSQLILQAHDAQAGALLDQIAEPLRVAARADEVIFGPAGHPSGVDGITVGIAV
Ga0187779_105262822	3300017959	Tropical Peatland	RSGLRLGNSARLSQLTVLAHDTRARALLDQIAEPLRVAARADAVVRGPAQHPSGVAGITVGIAP
Ga0187780_104673651	3300017973	Tropical Peatland	ATRVLRSGQRLGNSARLSQLIVQAHDAQARALLDQIAEPLRIAARAEAVVLAPAEHPSGVAGITVGIAVQTSPC
Ga0187780_105310732	3300017973	Tropical Peatland	GNSARLSQLVLQAHDAPGEALLDQIAEPLRVAARAGVVVRGPAGHPSGVDGITVGIIP
Ga0187805_105192161	3300018007	Freshwater Sediment	QLIVQPHDEAARALLEQIAEPLRVAARADTVVSGPAGHPSGVAGITVGITP
Ga0187772_107998232	3300018085	Tropical Peatland	RLSRLILQADGPAAETLLAQIAEPLRVAARADAVLLGQAEHPSGVPGIEVSIVP
Ga0210407_107334661	3300020579	Soil	RSGQRLGNSARLSQLIVQAHDARARSLLDQIAEPLRIAARADTVVRGTAGHPSGVAGITVGIAV
Ga0210399_113637262	3300020581	Soil	RSGQRLGNSARLSELIVQAHDPGARSLLDQIAEPLRIAARADALVRGPAGHPSGVDGITVGIAV
Ga0210388_110997161	3300021181	Soil	QPHGAPAEALLARIAEPLRIAARADAVIRGRAEHPSGVAGITVGITVGR
Ga0210389_111020681	3300021404	Soil	VLDPHDEATEALLDQIAEPLRIAARADAVVRGPAEHPSGVDGVTVGIVP
Ga0210394_114014111	3300021420	Soil	GNSTRLSQLVLDPHDEAAEALLDQIAEPLRIAARADAVVRGPAEHPSGVDGITVGIVP
Ga0210391_101649511	3300021433	Soil	NSARLRELIVQPHDARAEALLGRIAEPLRIAARADAVIRGRAEHPSGVAGITVGITVGR
Ga0210398_107503612	3300021477	Soil	TLTLQAHDQAARALLDQIAEPLRVAARADAVRFDEAGYPSGVDGVTVAIAV
Ga0210409_109962101	3300021559	Soil	SARLSQLIVQAHDDNAAALLDQIAEPLRVAVRADAVVRGPAEHFSGVAGITVGIVP
Ga0179589_101270921	3300024288	Vadose Zone Soil	LGNSARLSRLTVQAHDARARSLLDQIAEPLRVAARADALVLGPAGHPSGVDGITVGIAV
Ga0207692_112009771	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LGNSARLSKLTVQAHDDAARSLLDQIAEPLRIAARADALVLGPAGHPSGIDGITVGIAV
Ga0207699_105240412	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	RLGNSARLSQLIVQVRDAQARSLLDQIAEPLRVAARADALILGPAGHPSGVDGITVGIAV
Ga0207700_107659811	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RSAQRLGNSARLSQLIVQAHDAQAGSLLDQIAEPLRVAARADAMVRGTASHPSGVDGITVGITV
Ga0207665_103384431	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LSKLTVQAHDDAARSLLDQIAEPLRIAARADALILGPAGHPSGVDGITVGIAV
Ga0207665_116083282	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LSKLTVQAHDDAARSLLDQIAEPLRIAARADALVLGPAGHPSGIDGITVGIAV
Ga0209234_11330112	3300026295	Grasslands Soil	LIVQAHDARARSLLDQIAEPLRVAARADAVVRGTAGHPSGVAGITVDIAV
Ga0209471_11987501	3300026318	Soil	GQRLGNSARLSELIVQAHDPGARSLLDQIAEPLRIAARADALVRGPAGHPSGVDGITVGIAV
Ga0207949_10113901	3300026999	Forest Soil	LSELIVQAHDENAAALLDQIAEPLRVAARADAVLRGPAEHPSGVDAITVGIVP
Ga0208986_10148931	3300027031	Forest Soil	LTVQAHDAAARSLLDQIAEPLRIAARADALVLGPAGHPSGVDGITVGIAV
Ga0209139_102622812	3300027795	Bog Forest Soil	ARPSQLIVQAHDENAEALLEQIAEPLRIAVRADAVVRGPAEHFSGVAGITVGIVP
Ga0209040_101423603	3300027824	Bog Forest Soil	LRSGQRLGNSARLSQLIVQAHDAQAQALLDQIAEPLRIAARAGAVVRGPAGHASGVDGITVGITV
Ga0209693_100925052	3300027855	Soil	TRVLRSAQRLGNSARLSQLIVQPHTPPAEALLDQIAEPLRIAARARALVRAPATDPTGASTHPTGASTHPSGVDGITIGITA
Ga0209006_100920591	3300027908	Forest Soil	LDATRVLRSGQRLGNSARLSQLIVQAHTPAAETLLGQIAEPLRIAARARTLVRDPATRPTGTATHPSGVDDITIGITV
Ga0209698_114097142	3300027911	Watersheds	RVLRSGQRLGNSARLRELIVQPHNAQAEALLGRITEPLRIAARADAVIRGRAEHPSGVAGITVGITVGR
Ga0302220_100144515	3300028742	Palsa	VLRSGRRLGNSARLTQLIVQAHTAAAETLLDQIAEPLRIAARAGTLVRAPATHPSGVDAITGGIVA
Ga0302234_100525291	3300028773	Palsa	VLRSGRRLGNSARLTQLIVQAHTAAAETLLDQIAEPLRIAARARTLVRAPATHPSGVDAITGGIVA
Ga0302231_101507411	3300028775	Palsa	ILDATRVLRSGQRLGNSARLSQLIVQAHTPPAEALLDQIAEPLRIAVRARTLVRAPEHSTGTATHPSGVDGITIGITV
Ga0302232_100407674	3300028789	Palsa	ERLGNSARLSQLIVQAHTPSAEALLDQIAEPLRIAARARTLVRATHPTSAATHPSGVDGITIGITV
Ga0302226_100990842	3300028801	Palsa	RLSELIVQAHTPDAEALLEQIAEPLRIAARARTLVRGPADHPSGVDGITVGITA
Ga0308309_116695832	3300028906	Soil	NSARLSELIVQAHDEAAQTLLDQIGEPLRIAARADAVVRGLADHPSGVDGITVGIVP
Ga0311340_105505982	3300029943	Palsa	LRSGRRLGNSARLTQLIVQAHTAAAETLLDQIAEPLRIAARAGTLVRAPATHPSGVDAITGGIVA
Ga0302182_103742771	3300030054	Palsa	LDATRVLRSGQRLGNSARLSQLIVQAHTPPAEALLDQIAEPLRIAVRARTLVRAPEHSTGTATHPSGVDGITIGITV
Ga0302184_104020141	3300030490	Palsa	GNSARLSELIVQPHDEAARALLDQIAEPLRIAARADEVVRGPAEHPSGVAGITVGILPQAGDAVSFSA
Ga0302183_100477322	3300030509	Palsa	VLRSGRRLGNSARLTQLIVQAHTAAAETLLDQIAEPLRIAARAGTLVRAPATHPSGVDAITGGI
Ga0311356_115066462	3300030617	Palsa	DQLAVILDATRVLRSGQRLGNSARLNQLIVQAHTPAADTLLDQIAEPLRIAARARTLVRAPATHPTSLTTHPTGIATHPSGVDGITIGITV
Ga0311354_117824611	3300030618	Palsa	LGNSARLSELIVQPHDEAARALLDQIAEPLRIAARADEVVRGPAEHPSGVAGITVGILPQAGDAVSFSA
Ga0302311_100899032	3300030739	Palsa	VLRSGRRLGNSARLTQLIVQAHTAAAETLLDQIAEPLRIAARARTLVRAPATHPSGVDAITVGIVA
Ga0265760_101784041	3300031090	Soil	LIVQPHDARAEALLGRIAEPLRIAARADAVIRGRAEHPSGVAGITVAITVGR
Ga0318538_106424901	3300031546	Soil	QRLGNSARLGQLILQAHDAPAGALLDQIAEPLRVAARAEAVVRGPAEHPSGVDGITVGIT
Ga0307508_105732991	3300031616	Ectomycorrhiza	ARLSQLTVQAHDDAARSLLDQIAEPLRIAARADAVVRGTAGHPSGVAGITVGIAV
Ga0318561_105030152	3300031679	Soil	RLGNSTRLSQLIVQADNPVADALLDQIAGPLRVAARADEVVRGPATYPSGVAGITVGITV
Ga0318574_108335493	3300031680	Soil	CTTASARLSQLIVQAHDAGAQALLDQIAEPLRIAARAEAVVQGPAEHPSGVAGITVGIVA
Ga0310686_1079292782	3300031708	Soil	LSQLIVQAHDENAEALLDQIAEPLRVAVRADAVVRGPAEHFSGVAGITVGIVP
Ga0318535_100070661	3300031764	Soil	GNSTRLSQLIVQAHDEPADALLNQIAEPLRVAARADAVVRGAATYPSGVAGVTVAIAP
Ga0318566_101111411	3300031779	Soil	GVVGARLRSLTVQAHTAAAADLLDVIAEPLRLAARADAIVRGAAGHPSGVAGISVGIAV
Ga0318552_106069642	3300031782	Soil	GRVQDHSQLIVQAHDEPADALLNQIAEPLRVAARADAVVRGAATYPSGVAGVTVAIAP
Ga0318576_105624551	3300031796	Soil	PAAQRLGNSARLSELIVQAHDASARSLLDQIAEPLRVAARADALVLGPAEHPSGVDGITVGIAV
Ga0318568_107040873	3300031819	Soil	VLRSGQRLGNSARLSQLIVQAHDAGAQALLDQIAEPLRIAARAEAVVQGPAEHPSGVAGITVGIVA
Ga0318499_102305981	3300031832	Soil	TRVLRSALRLGNSARLRSLTVQAHTAAAADLLDVIAEPLRLAARADAIVRGAAGHPSGVAGISVGIAV
Ga0318499_103692451	3300031832	Soil	MTRVSARLSKLIVQAHDAGARSLLDQIAEPLRVAARADALVLGPAEHPSGVDGITVG
Ga0318512_100130564	3300031846	Soil	VQAHDASARSLLDQIAEPLRVAARADALVLGPAEHPSGVDGITVGIAV
Ga0318522_100409851	3300031894	Soil	VLRSALRLGNSARLRSLTVQARTPAAADLLDVIAEPLRLAARADAIVRGAASHPSGVEGITVGIAV
Ga0318551_103158701	3300031896	Soil	VILDATRVLRSGQRLGNSARLSQLIVQAHDAGARALLDRIAEPLRIAARAEAVVRAPAAHPSGVAGITVGIVA
Ga0310912_102512102	3300031941	Soil	GNSARLRTLTVQAHTATAADLLDVIAEPLRLAARADAIVRGAASHPSGVEGITVGIAV
Ga0310909_105373431	3300031947	Soil	VVQAHDAGARSLLDQIAEPLRVAARADALVLGPAEHPSGVRGITVGIAV
Ga0307479_108728512	3300031962	Hardwood Forest Soil	RLIVQAHDAAAEALLDQIAEPLRVAARAGALVRGPAEHPSGVEGITVGIAV
Ga0318545_103780301	3300032042	Soil	VLRSALRLGNSARLRSLTVQARTPAAADLLDVIAEPLRLAARADAIVRGAAGHPSGVEGITVGIAV
Ga0318570_101348492	3300032054	Soil	NSTRLSQLIVQADNPVADALLDQIAGPLRVAARADEVVRGPATYPSGVAGITVGITV
Ga0318575_104218091	3300032055	Soil	QRLGNSARLSQLIVQAHDAGAQALLDQIAEPLRIAARAEAVVRAPAAHPSGVAGITVGIV
Ga0318540_100261783	3300032094	Soil	LTVQARTPAAADLLDVIAEPLRLAARADAIVRGAASHPSGVEGITVGIAV
Ga0318540_103287081	3300032094	Soil	LRLGNSARLSQLNVQSHDAAAQALLDQIAEPLRVAARADAVLRGPAEHPSGVDGITVGIV
Ga0306920_1027919691	3300032261	Soil	LGNSARLSELIVQAHDAHARSLLDQIAEPLRVAARADALVLGPAEHPSGVRGITVGIAV
Ga0335079_104204933	3300032783	Soil	LTVQAHEARARSLLDQIAEPLRVAARADALVLGPADHPSGVDGITVGIAV
Ga0335079_114947601	3300032783	Soil	ATRVLRSGQRLGNSARLSQLIVQAHDAEARALLDRIAEPLRIAARAEAVVRAPAEHPSGVAGITVAIAV
Ga0335074_107985032	3300032895	Soil	SQLIVQAHDARAGALLDQIAEPLRIAARADTVVRGTAGHPSGVAGITVGIAV
Ga0335076_100720581	3300032955	Soil	SKLIVQAHDAGARSLLDQIAEPLRVAARADALVLGPAEHPSGVSGITVGIAV
Ga0335076_102724663	3300032955	Soil	LRSGLRLGNSARLSELIVQTHDENAEALLDQIAEPLRIAARADAVIRRPAEHPSGVTGITVGIVP
Ga0335077_118848742	3300033158	Soil	ARLSQLIVQAHDAEARALLDQIAEPLRIAARAEAVVYGPAGHPSGVAGITVGIAV
Ga0314865_026619_1276_1464	3300033806	Peatland	GQRLGNSARLSQLIVQAHDARARSLLDQIAEPLRIAARADALVLGSAGHPSGVDGITVGITV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083295

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences