Metagenome Family F083406

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083406
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	49 residues
Representative Sequence	VDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVLIVAP
Number of Associated Samples	72
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	99.12 %
% of genes near scaffold ends (potentially truncated)	95.58 %
% of genes from short scaffolds (< 2000 bps)	98.23 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.752 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.009 % of family members)
Environment Ontology (ENVO)	Unclassified (29.204 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.133 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF08378	NERD	19.47
PF07228	SpoIIE	6.19
PF00069	Pkinase	3.54
PF13466	STAS_2	1.77
PF00211	Guanylate_cyc	1.77
PF13751	DDE_Tnp_1_6	1.77
PF03704	BTAD	1.77
PF13340	DUF4096	1.77
PF03816	LytR_cpsA_psr	0.88
PF13847	Methyltransf_31	0.88
PF05598	DUF772	0.88
PF01163	RIO1	0.88
PF04542	Sigma70_r2	0.88
PF04024	PspC	0.88
PF08309	LVIVD	0.88
PF02371	Transposase_20	0.88
PF13464	DUF4115	0.88
PF03640	Lipoprotein_15	0.88
PF13581	HATPase_c_2	0.88
PF00528	BPD_transp_1	0.88
PF00313	CSD	0.88
PF08448	PAS_4	0.88
PF08757	CotH	0.88
PF13683	rve_3	0.88
PF02518	HATPase_c	0.88
PF01839	FG-GAP	0.88
PF13676	TIR_2	0.88
PF10604	Polyketide_cyc2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	14.16
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.77
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	1.77
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	1.77
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.88
COG1316	Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.88
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.88
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.88
COG5337	Spore coat protein CotH	Cell wall/membrane/envelope biogenesis [M]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
All Organisms	root	All Organisms	44.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
cellular organisms	root	All Organisms → cellular organisms	44.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	31.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.77 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27.43 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.77 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	23.89 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.77 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.88 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.08 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.42 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.77 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.77 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.77 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.88 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.88 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.88 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.08 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.77 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.77 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.77 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.88 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.88 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.88 %
Dietziaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Dietziaceae	0.88 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.88 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.08 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.77 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.77 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Marmoricola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola	0.88 %
Dietzia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Dietziaceae → Dietzia	0.88 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.88 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.88 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.88 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.08 %
Actinoplanes campanulatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes campanulatus	1.77 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.77 %
Dietzia cinnamea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Dietziaceae → Dietzia → Dietzia cinnamea	0.88 %
Marmoricola solisilvae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola solisilvae	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.88 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.88 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.88 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_11223149	Not Available	519	Open in IMG/M
3300000956\|JGI10216J12902_104458766	Not Available	789	Open in IMG/M
3300000956\|JGI10216J12902_105102532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Dietziaceae → Dietzia → Dietzia cinnamea	545	Open in IMG/M
3300000956\|JGI10216J12902_110294211	Not Available	564	Open in IMG/M
3300001431\|F14TB_100167931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	760	Open in IMG/M
3300006049\|Ga0075417_10248807	Not Available	852	Open in IMG/M
3300006852\|Ga0075433_10353882	Not Available	1298	Open in IMG/M
3300009789\|Ga0126307_10292081	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300009789\|Ga0126307_10808793	Not Available	756	Open in IMG/M
3300009816\|Ga0105076_1000410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4619	Open in IMG/M
3300009816\|Ga0105076_1064307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	678	Open in IMG/M
3300009822\|Ga0105066_1111750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609	Open in IMG/M
3300009836\|Ga0105068_1040487	Not Available	829	Open in IMG/M
3300009836\|Ga0105068_1088371	Not Available	594	Open in IMG/M
3300009840\|Ga0126313_10938903	Not Available	707	Open in IMG/M
3300009840\|Ga0126313_11805663	Not Available	511	Open in IMG/M
3300010029\|Ga0105074_1051945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	725	Open in IMG/M
3300010038\|Ga0126315_11192183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	517	Open in IMG/M
3300010040\|Ga0126308_10227423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1206	Open in IMG/M
3300010040\|Ga0126308_11015157	Not Available	582	Open in IMG/M
3300010041\|Ga0126312_10164775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1542	Open in IMG/M
3300010041\|Ga0126312_10184622	Not Available	1455	Open in IMG/M
3300010041\|Ga0126312_10393380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	985	Open in IMG/M
3300010041\|Ga0126312_10417909	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300010042\|Ga0126314_10298783	Not Available	1149	Open in IMG/M
3300010042\|Ga0126314_10812649	Not Available	688	Open in IMG/M
3300010042\|Ga0126314_11118425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	587	Open in IMG/M
3300010044\|Ga0126310_10171132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1403	Open in IMG/M
3300010044\|Ga0126310_11454528	Not Available	560	Open in IMG/M
3300010045\|Ga0126311_11237604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300010333\|Ga0134080_10347082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes campanulatus	675	Open in IMG/M
3300010337\|Ga0134062_10367336	Not Available	697	Open in IMG/M
3300010999\|Ga0138505_100034455	All Organisms → cellular organisms → Bacteria → Terrabacteria group	700	Open in IMG/M
3300011000\|Ga0138513_100054075	Not Available	611	Open in IMG/M
3300012355\|Ga0137369_10712713	Not Available	689	Open in IMG/M
3300012908\|Ga0157286_10466635	Not Available	505	Open in IMG/M
3300012937\|Ga0162653_100048148	Not Available	656	Open in IMG/M
3300012937\|Ga0162653_100065933	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300014487\|Ga0182000_10398495	Not Available	609	Open in IMG/M
3300014487\|Ga0182000_10431816	Not Available	593	Open in IMG/M
3300014487\|Ga0182000_10523140	Not Available	556	Open in IMG/M
3300014965\|Ga0120193_10051177	Not Available	600	Open in IMG/M
3300018031\|Ga0184634_10135158	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300018051\|Ga0184620_10050372	Not Available	1169	Open in IMG/M
3300018072\|Ga0184635_10304759	Not Available	623	Open in IMG/M
3300018073\|Ga0184624_10358841	Not Available	652	Open in IMG/M
3300018073\|Ga0184624_10466247	Not Available	553	Open in IMG/M
3300018078\|Ga0184612_10091733	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300018081\|Ga0184625_10259988	Not Available	909	Open in IMG/M
3300018432\|Ga0190275_12328155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	614	Open in IMG/M
3300018469\|Ga0190270_11431613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	738	Open in IMG/M
3300019867\|Ga0193704_1052415	Not Available	796	Open in IMG/M
3300022534\|Ga0224452_1141666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → Marmoricola solisilvae	740	Open in IMG/M
3300022694\|Ga0222623_10219618	Not Available	736	Open in IMG/M
3300022694\|Ga0222623_10296958	Not Available	621	Open in IMG/M
3300022756\|Ga0222622_10890891	Not Available	652	Open in IMG/M
3300025972\|Ga0207668_11450584	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300027277\|Ga0209846_1034627	Not Available	799	Open in IMG/M
3300027909\|Ga0209382_11745221	Not Available	609	Open in IMG/M
3300028587\|Ga0247828_11131766	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300028596\|Ga0247821_11111434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300028608\|Ga0247819_10893378	Not Available	556	Open in IMG/M
3300028718\|Ga0307307_10195127	Not Available	640	Open in IMG/M
3300028719\|Ga0307301_10172552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	699	Open in IMG/M
3300028720\|Ga0307317_10169879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300028720\|Ga0307317_10198162	All Organisms → cellular organisms → Bacteria → Terrabacteria group	677	Open in IMG/M
3300028722\|Ga0307319_10320855	Not Available	513	Open in IMG/M
3300028755\|Ga0307316_10322572	Not Available	566	Open in IMG/M
3300028771\|Ga0307320_10053394	Not Available	1494	Open in IMG/M
3300028771\|Ga0307320_10346765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	593	Open in IMG/M
3300028771\|Ga0307320_10354350	Not Available	586	Open in IMG/M
3300028787\|Ga0307323_10190429	Not Available	741	Open in IMG/M
3300028796\|Ga0307287_10106397	Not Available	1059	Open in IMG/M
3300028796\|Ga0307287_10352068	Not Available	555	Open in IMG/M
3300028807\|Ga0307305_10208479	All Organisms → cellular organisms → Bacteria → Acidobacteria	898	Open in IMG/M
3300028811\|Ga0307292_10110802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1086	Open in IMG/M
3300028814\|Ga0307302_10014037	All Organisms → cellular organisms → Bacteria	3591	Open in IMG/M
3300028814\|Ga0307302_10130759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1210	Open in IMG/M
3300028814\|Ga0307302_10510754	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300028876\|Ga0307286_10135056	Not Available	878	Open in IMG/M
3300028876\|Ga0307286_10183992	Not Available	755	Open in IMG/M
3300028876\|Ga0307286_10323123	Not Available	572	Open in IMG/M
3300028878\|Ga0307278_10368496	Not Available	632	Open in IMG/M
3300028880\|Ga0307300_10220724	Not Available	620	Open in IMG/M
3300030336\|Ga0247826_10536100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	889	Open in IMG/M
3300031548\|Ga0307408_100979052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	778	Open in IMG/M
3300031548\|Ga0307408_101537390	Not Available	630	Open in IMG/M
3300031731\|Ga0307405_11257259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300031824\|Ga0307413_10112957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1822	Open in IMG/M
3300031824\|Ga0307413_10965197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes campanulatus	728	Open in IMG/M
3300031852\|Ga0307410_12013593	Not Available	515	Open in IMG/M
3300031903\|Ga0307407_11158831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	603	Open in IMG/M
3300031911\|Ga0307412_10279247	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300031911\|Ga0307412_10369863	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300031911\|Ga0307412_11006861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	736	Open in IMG/M
3300031995\|Ga0307409_100978187	Not Available	863	Open in IMG/M
3300031995\|Ga0307409_101114134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	811	Open in IMG/M
3300031995\|Ga0307409_101245324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300031995\|Ga0307409_101452343	Not Available	713	Open in IMG/M
3300032002\|Ga0307416_101324355	Not Available	826	Open in IMG/M
3300032002\|Ga0307416_103070937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	558	Open in IMG/M
3300032002\|Ga0307416_103816396	Not Available	505	Open in IMG/M
3300032004\|Ga0307414_10889806	Not Available	816	Open in IMG/M
3300032004\|Ga0307414_12269909	Not Available	507	Open in IMG/M
3300032005\|Ga0307411_11934547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300032126\|Ga0307415_100457041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1105	Open in IMG/M
3300032126\|Ga0307415_100733283	Not Available	895	Open in IMG/M
3300032126\|Ga0307415_100813118	Not Available	854	Open in IMG/M
3300032126\|Ga0307415_100881931	Not Available	823	Open in IMG/M
3300032126\|Ga0307415_101792784	Not Available	594	Open in IMG/M
3300033551\|Ga0247830_11153503	Not Available	619	Open in IMG/M
3300033551\|Ga0247830_11477086	Not Available	544	Open in IMG/M
3300034115\|Ga0364945_0140452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	722	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.34%
Host-Associated	Host-Associated	25.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.60%
Plants	Host-Associated → Plants	25.66%
Aquatic	Environmental → Aquatic	9.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.66%
Sediment	Environmental → Aquatic → Sediment	9.73%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.54%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.73%
Sand	Environmental → Terrestrial → Soil → Sand	6.19%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.54%
Loam	Environmental → Terrestrial → Soil → Loam	1.77%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.73%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.19%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.31%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.77%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	22.12%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.04%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.19%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.54%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_112231492	3300000550	Soil	VNQLGPNALGEVLEPGRVADCYLGLLLSPGPVGEPEAGTVLIVAPASLLHPRVPQPDGSL
JGI10216J12902_1044587661	3300000956	Soil	VNQFGPNALGETLTPGRVADCYLGLLLAPGPVGEPEAGTVLIVAPAALL
JGI10216J12902_1051025321	3300000956	Soil	VDQLGPNALGEVLEPGKISDCYLGLLLPPPSAGEPEAGTILIV
JGI10216J12902_1102942112	3300000956	Soil	VDQLGPNALGEVLEPGRVADCYLGLLQPPGSAGEPEAGTVLIVAPASLLHP
F14TB_1001679312	3300001431	Soil	VNQLGPNALGEVLEPGRVADCYLGLLLSPGPVGEPEAGTVLIVAPA
Ga0075417_102488073	3300006049	Populus Rhizosphere	VQHLGPNAFGETLEPGRVGDCYLGLLLPPGPAGEPEAGTI
Ga0075433_103538821	3300006852	Populus Rhizosphere	VDQLGPNALGEVLGPGRVADFYLGLLLPPGSAGEPEAATVLIVAPAALLHPRVPQ
Ga0126307_102920811	3300009789	Serpentine Soil	VDQLGPNALGEVLEPGRVADCYLGLLLAPRPAGEPEAGTVLIVAPAAL
Ga0126307_108087931	3300009789	Serpentine Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIVAPAALLHPR
Ga0105076_10004101	3300009816	Groundwater Sand	VDQLGPNALGETLEPGRVTDCYLGLLLPPGPAGEPEAGTVLVVAPAALLHPA
Ga0105076_10643072	3300009816	Groundwater Sand	VSELGPNAFGEPVDPSRVADCYLGLLLPPPPAGEPEAGTVLVVGPTALLHPRVPQPAG
Ga0105066_11117502	3300009822	Groundwater Sand	VDQLGPNALGETLEPGRVTDCYLGLLLPPGPAGEPEAGTVLVV
Ga0105068_10404872	3300009836	Groundwater Sand	VDQLGPNALGEVIEPGRVADCYLGLLLVPGPAGELEAGTVLVVA
Ga0105068_10883711	3300009836	Groundwater Sand	VDQLGPNALGESLEPGRVADCYLGLRLPPGPTGEPEAGTVLIVAPAALLHPGVPQPAGSL
Ga0126313_109389032	3300009840	Serpentine Soil	VDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPE
Ga0126313_118056632	3300009840	Serpentine Soil	VQQLGPNAFGETLESGRVADCYLGLLLPPPPAGEPEAGTVLIVA
Ga0105074_10519451	3300010029	Groundwater Sand	VDQLGPNALGEVLEPGRVTDCYLGLLLPPGPAGEPEAGTILIVAPAALLHPAVPQP
Ga0126315_111921832	3300010038	Serpentine Soil	VGTDQFGLNALGETLEPSRVADCYLGLLLPPGPAGEPEAGTVLIVTPAALLHPDVPQPTG
Ga0126308_102274231	3300010040	Serpentine Soil	VDQLGPNALGEVLEPGRVADCYLGFLLPPGPAGEPEAGTILIVAPAALLHPRVPQPDGSLVY
Ga0126308_110151572	3300010040	Serpentine Soil	VDQLGPNALGETLEPGRVTDCYLGLLLPPGPAGELEAGTVLVVAP
Ga0126312_101647751	3300010041	Serpentine Soil	VDQLGPNALGETLESGRVGDCYLGLLLPPGSAGEPEAGTILILAPAALLHPRIPQPAGSLVYQL
Ga0126312_101846221	3300010041	Serpentine Soil	VDQLGPNALGETLEPGRVADCYLGLLLPPAPAGEPEAGTILILAPAALLHP
Ga0126312_103933801	3300010041	Serpentine Soil	VDSFGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVLVVAPAALLRPGVAQPA
Ga0126312_104179091	3300010041	Serpentine Soil	VDQLGPNALGEVLEPGRVAHCYLGLLLPPGSVGEPEAGTVLVVDPAALLHPRIPQPAGSL
Ga0126314_102987833	3300010042	Serpentine Soil	VDQLGPNALGEVLKPGRVADCYLGLLLPPGPAGEPEAGTILIVAP
Ga0126314_108126492	3300010042	Serpentine Soil	VDQLGPNALGEVLEPGRVADCYLGLPLPPGPAGEPEAGTILIVAPAALL
Ga0126314_111184252	3300010042	Serpentine Soil	VDQLGPNALGETLEPGRVTDCYLGLLLPPGPAGELE
Ga0126310_101711323	3300010044	Serpentine Soil	VDQLGPNALGQVLKAGRVADCYLGLLLPPGPAGEPEAGTILVVAPA
Ga0126310_114545282	3300010044	Serpentine Soil	VDQLGRNALGESLEPGRTNDCYLGLLLPPPPAGELEAGTI
Ga0126311_112376041	3300010045	Serpentine Soil	VDQLGPNALGETLESGRVGDCYLGLLLPPGPAGEPEAGTILIVAPATLLHRRIPQPAGS
Ga0134080_103470821	3300010333	Grasslands Soil	VDQLGPNALGAVLEPGRVADCYLGLLLSPGPVGEPEAGTVLIVAPAALLHPRVPQPD
Ga0134062_103673362	3300010337	Grasslands Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIVAPATLLHPAVS*
Ga0138505_1000344553	3300010999	Soil	LAPNALGEALEPGRAADCYVGLLLPPGPVGELEAGTILIVAPAALLHPRVPQSDGAWCMH
Ga0138513_1000540751	3300011000	Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEAGTILVVAPASLLHPRVP
Ga0137369_107127131	3300012355	Vadose Zone Soil	VDQLGANALGEVLEPGRVADCYLGLLLPPPPAGEPEAGIILIVGPSTLLHPRVPQPAGTL
Ga0157286_104666351	3300012908	Soil	VDQLGPNALGEILEPGRIADCYLGLLLPPGPAGEPEAGTILIVAPAALLHP
Ga0162653_1000481482	3300012937	Soil	LAPNALGEALEPGRAADCYVGLLLPPGPVGELEAGTIL
Ga0162653_1000659332	3300012937	Soil	VDQLGPNALGEILEPGRVADCYLGLLLPPGSVGELEAGTVLVVAPAALLHPGVPQPAGSLFY
Ga0182000_103984951	3300014487	Soil	VDQVGPNALGEILEPGRVADCFLGLLLPPGSAGELEAGTVLVVAPASLLHPGVPQ
Ga0182000_104318161	3300014487	Soil	VDQLGPQRAREALEPGRVADCYLGLLLPPEPTGEPEAGTILI
Ga0182000_105231401	3300014487	Soil	VDRLGPNALGEVLEPGKISDCYLGLLLRPPSAVEPEAGTILIVAPTALLHPAVPQP
Ga0120193_100511772	3300014965	Terrestrial	VDQLGANAFGENLEPGRVTDCSLGLLLPPGPAGEP
Ga0184634_101351581	3300018031	Groundwater Sediment	MDQFGPNALGETLVPGRVTDCYLGLLLPPGPAGEPEAGTILVVAP
Ga0184620_100503721	3300018051	Groundwater Sediment	VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEAGTILIVAPA
Ga0184635_103047593	3300018072	Groundwater Sediment	VDQLGPNALGEVLEPGRVTDCYLGLLLPPGPAGEPEAGTILVVAPVGLLHPRVPQPDGSLVY
Ga0184624_103588411	3300018073	Groundwater Sediment	VDQLGPNALGEVLEAGRVVNCYLGLLLSPGPVGEPEAGTVLVVAPAALLHPRVPQPPGSL
Ga0184624_104662471	3300018073	Groundwater Sediment	VDQLGPNALGEALEPGRVPDCYLGLLLPPGPAGEPEA
Ga0184612_100917331	3300018078	Groundwater Sediment	VGTDQFGPNALGETLEPSRVADCYLGLLLPPGPAGEPEAGTVLIVTPAAL
Ga0184625_102599882	3300018081	Groundwater Sediment	VDQLGPNALGEVLEAGRVADCYLGLLLPPGPAGEPEAGTILVVA
Ga0190275_123281552	3300018432	Soil	VGTDQFGPNALGETLEPSRVADCYLGLLLPPGPAGEPEAGTVLIVAPAVLL
Ga0190270_114316131	3300018469	Soil	VGTDQFGPNALGETLEPSRVADCYLGLLLPPGPAGEPEA
Ga0193704_10524151	3300019867	Soil	VGLLGPNANGQLLQPGRVADCYLGLLVPPGLVGEPEAGTVLIVAAAALLHPRVPQ
Ga0224452_11416662	3300022534	Groundwater Sediment	VDQFGPNALGETLVPGRVTDCYLGLLLPPGPAGELEAGTVLVVAAAALLHPGVP
Ga0222623_102196181	3300022694	Groundwater Sediment	MRAVDQFGPNALGETLEPGRVADCYLGLLLPPGPAGEPEVGT
Ga0222623_102969581	3300022694	Groundwater Sediment	VDQLGPNALGEVLEAGRVADCYLGLLLPPGPAGEPEAGTILVVAPAALLHPRVPQPDGTL
Ga0222622_108908911	3300022756	Groundwater Sediment	VDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLVVGP
Ga0207668_114505841	3300025972	Switchgrass Rhizosphere	VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIVAPAALLHPRV
Ga0209846_10346271	3300027277	Groundwater Sand	VDQFGPNALGEVLEPGRVADCYLGLLLPPPPAGEPEA
Ga0209382_117452212	3300027909	Populus Rhizosphere	VNQLGPNALGEVLKPGRVADCHLSLLLPPGPVGEPEAGTILIV
Ga0247828_111317662	3300028587	Soil	VDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVLIVAPAALLHPGVPQPAGATIR
Ga0247821_111114342	3300028596	Soil	VDQFGPNALGETLEPGRVTDCYLGLLLPPGPAGEPEAGTILI
Ga0247819_108933781	3300028608	Soil	VDQLGPNALGEVLEPGRVPDCYLGLLLPPGPAGEPEAGTILIVAPATL
Ga0307307_101951271	3300028718	Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIVAPAALLHPAVLQPAGSL
Ga0307301_101725522	3300028719	Soil	VDQLGPNALGETLEPGRVADSYLGLLLPPGPAGEPEAGTVLIVSPSTLLHPGVPQPAGSLVY
Ga0307317_101698792	3300028720	Soil	MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLVVGPAALLHPRVP
Ga0307317_101981622	3300028720	Soil	VDQLGPNALGEVPESGRVTDCYLALLLPPGPAGEPEAGTVLIVGPAALLDPRVPQPEG
Ga0307319_103208551	3300028722	Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPSGPAGEPEAGTILIVGPST
Ga0307316_103225722	3300028755	Soil	VDPLGPNTLGEVLEPGRVADCYLGLLLPPPHAGELEA
Ga0307320_100533941	3300028771	Soil	MRAVDQLGPNALGETLEPGRVVDCYLGLLLPPGPAGEPEAGTVLAVACR
Ga0307320_103467651	3300028771	Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEA
Ga0307320_103543501	3300028771	Soil	VDQFDPNALDETLAPGRVTDCYLGLLLPPGSAGEPEVGTF
Ga0307323_101904291	3300028787	Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAG
Ga0307287_101063971	3300028796	Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEAGTILVVAPAALLHPRVPQPE
Ga0307287_103520681	3300028796	Soil	VDQLGPNALGEVLEAGRVADCYLGLLLPPGPAGEPEAGTILVVAPA
Ga0307305_102084792	3300028807	Soil	MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLVVGPAALLH
Ga0307292_101108022	3300028811	Soil	MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLVVGPAALLHPR
Ga0307302_100140373	3300028814	Soil	VDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVLIVAP
Ga0307302_101307592	3300028814	Soil	MRAVDQLGPNALGKTLEPGRVVDCYLGLLLPPGPAGEPEAGTVLAVACR
Ga0307302_105107541	3300028814	Soil	VCEIGPNAFGETLKPGGVADCYLGLLVPPGPLGEPEAGTILVV
Ga0307286_101350561	3300028876	Soil	VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTVLI
Ga0307286_101839921	3300028876	Soil	MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVL
Ga0307286_103231231	3300028876	Soil	VGVDQLGPNALGETLEPGRVADCYLGLLLPPGPAGEPEAGTVL
Ga0307278_103684961	3300028878	Soil	VDQLGPNALGEVLEPGRVADCYLGLRLPPGPTGEPEAG
Ga0307300_102207241	3300028880	Soil	VDQLGPNALGETLEAGRVADCYLGLLLPPGPAGEPEAGTVLVVAPAALLHPRVPQPDGSL
Ga0247826_105361001	3300030336	Soil	VDQLGPNALGEFLEPGRVADCYVGLQLPPGPAGELEAGTVLIVAPAALLHPRVPQP
Ga0307408_1009790521	3300031548	Rhizosphere	VGTDQFGPNALGETLKPSRVADCYLGLLLPPGPAGEPEAGTILVVAPASLLHPRVPQPD
Ga0307408_1015373901	3300031548	Rhizosphere	VDQLGPNALGETLEPGRVGDCYLGLLLPPGPAGEPEAGTILIVGPATLL
Ga0307405_112572591	3300031731	Rhizosphere	MPSRLEPGRVADCYLGLLLPPGPVGELEAGTVLVVAPAALLHPRVPQPDGSLVHA
Ga0307413_101129571	3300031824	Rhizosphere	VDQLGRNAFGEVLEPGRVADCYLGLLLPPGPAGELEA
Ga0307413_109651971	3300031824	Rhizosphere	VDQLGPNALGEVLEPGRVGDCYLGLLLPPGPAGEPEAGTIVIVAPATLLRPR
Ga0307410_120135931	3300031852	Rhizosphere	VDQLGRNALGESLEPGRTNDCYLGLLLPPPPAGELEAG
Ga0307407_111588311	3300031903	Rhizosphere	VDQLGPNALGEVLEPGRVADCYLGLLLPPGSAGEPEA
Ga0307412_102792472	3300031911	Rhizosphere	VDQLGPSALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILILAPATLLHPDVPQPTSMSCLRVVATH
Ga0307412_103698631	3300031911	Rhizosphere	MDQLGSNALGEVLEPGRVTDCYLGLLLPPGPVGEPEAGTVLVVAPA
Ga0307412_110068612	3300031911	Rhizosphere	VDQLGPNALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTILIV
Ga0307409_1009781872	3300031995	Rhizosphere	MDQLGPDALGEVLEPGRVADCYLGLLLPPGPAGEPEAGTVLIVGPAALLHPRVPQPAGSL
Ga0307409_1011141341	3300031995	Rhizosphere	VDQLGPNALGQVLEPGRVADCYLGLPLPPGPVGESEAGTVLVVAPAALLHPRVPQ
Ga0307409_1012453241	3300031995	Rhizosphere	VGTDQFGPNALGETLKPSRVADCYLGLLLPPGPAGEPEA
Ga0307409_1014523431	3300031995	Rhizosphere	MDQLGPNALGEVLEPGRVADCYLGLLLPPGSVGEPEAGTVLV
Ga0307416_1013243552	3300032002	Rhizosphere	VDQLGPNALGETLEPGRVADCYLGLLLPPGPVANPRPG
Ga0307416_1030709372	3300032002	Rhizosphere	VGTDQFDPNALGETLVPGRVADCYLGLLLPPGPAGEPEAGTVLIVTPAALLHPDVPQ
Ga0307416_1038163961	3300032002	Rhizosphere	VDQLGPNALGEVLEPGRVADCYLGLLLPPGSTGEP
Ga0307414_108898061	3300032004	Rhizosphere	VGQLDVNAHGEVLEPGRVADCYLGLLLPPGPAGELEAGTVLIVAPAA
Ga0307414_122699092	3300032004	Rhizosphere	VDQLGPNARGETLEPGRVADCYLGLLLPPRPAGEPEAGTILILA
Ga0307411_119345472	3300032005	Rhizosphere	VDQLGRNAFGEVLEPGRVADCYLGLLLPPGPAGELEAGTVLVVA
Ga0307415_1004570411	3300032126	Rhizosphere	VGTDQFGPNALGETLEPSRVADCYLGLLLPPGPAGEPEAGTVLIVT
Ga0307415_1007332832	3300032126	Rhizosphere	VDQLGPNALGEVLKPGRVADCYLGLLLPPGPAGEPEAGTVLIVAPAALLHPRV
Ga0307415_1008131181	3300032126	Rhizosphere	VDQLGPNALGETLEPSRVGDCFLGLLLPPGPVGEPEAGTV
Ga0307415_1008819313	3300032126	Rhizosphere	MDRLGRNALGEVLEPGRVADCYLGLLLPPGPAGEP
Ga0307415_1017927841	3300032126	Rhizosphere	MQAVEQFGPNALGETLEPGRVTGCYLGLLLPPGPAGEPEAGTILIVAPAALLHPGVPQPAGNLGL
Ga0247830_111535031	3300033551	Soil	VDQPGPNALGEVLEPGRVADCYLGLLLPPGPAGELESGTVLILAPAVLLHPQVPQPEGSLVYE
Ga0247830_114770862	3300033551	Soil	VDQLGPNALGEVLEPGRVAECYLGLLLPPGPVGEPEAGTVLI
Ga0364945_0140452_546_722	3300034115	Sediment	MDQLGPNALGEVLEPGRVTDCYLGLLLPPGPAGEPEAGTILVVAPVGLLHPRVPQPDGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083406

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences