Metagenome / Metatranscriptome Family F083812

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083812
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	52 residues
Representative Sequence	VSDKDSHSESITRYEGPGIEERHGIVPTWLAIVYAVMFVWMVWYTIVFWTDKG
Number of Associated Samples	78
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.04 %
% of genes near scaffold ends (potentially truncated)	17.86 %
% of genes from short scaffolds (< 2000 bps)	69.64 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.036 % of family members)
Environment Ontology (ENVO)	Unclassified (49.107 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.036 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.86% β-sheet: 0.00% Coil/Unstructured: 69.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00115	COX1	43.75
PF13442	Cytochrome_CBB3	37.50
PF02433	FixO	2.68
PF14686	fn3_3	1.79
PF07992	Pyr_redox_2	0.89
PF14715	FixP_N	0.89
PF13463	HTH_27	0.89
PF00034	Cytochrom_C	0.89
PF03597	FixS	0.89
PF13386	DsbD_2	0.89
PF13580	SIS_2	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2993	Cbb3-type cytochrome oxidase, cytochrome c subunit FixO	Energy production and conversion [C]	2.68
COG3197	Cytochrome oxidase maturation protein, CcoS/FixS family	Posttranslational modification, protein turnover, chaperones [O]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.57 %
Unclassified	root	N/A	21.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.57 %
Unclassified	root	N/A	21.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.57 %
Unclassified	root	N/A	21.43 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.11 %
Unclassified	root	N/A	21.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.43 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.43 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.43 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	4.46 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.43 %
Ralstonia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia	1.79 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.43 %
Ralstonia pickettii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii	1.79 %
Microvirga lupini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10118134	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300002245\|JGIcombinedJ26739_100793298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lupini	827	Open in IMG/M
3300004631\|Ga0058899_10882098	All Organisms → cellular organisms → Bacteria → Proteobacteria	1110	Open in IMG/M
3300005538\|Ga0070731_10379511	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300005610\|Ga0070763_10703784	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005994\|Ga0066789_10061388	All Organisms → cellular organisms → Bacteria	1636	Open in IMG/M
3300006050\|Ga0075028_100513340	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300006893\|Ga0073928_10057042	All Organisms → cellular organisms → Bacteria → Proteobacteria	3474	Open in IMG/M
3300006893\|Ga0073928_10323695	All Organisms → cellular organisms → Bacteria → Proteobacteria	1150	Open in IMG/M
3300010159\|Ga0099796_10092415	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300011269\|Ga0137392_10061190	All Organisms → cellular organisms → Bacteria	2866	Open in IMG/M
3300011269\|Ga0137392_10169625	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300011269\|Ga0137392_10223098	Not Available	1547	Open in IMG/M
3300011270\|Ga0137391_11394468	Not Available	547	Open in IMG/M
3300011271\|Ga0137393_10074575	Not Available	2715	Open in IMG/M
3300012096\|Ga0137389_10512425	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300012203\|Ga0137399_10131812	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300012203\|Ga0137399_11464809	Not Available	569	Open in IMG/M
3300012205\|Ga0137362_10841414	Not Available	785	Open in IMG/M
3300012361\|Ga0137360_11053006	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300012363\|Ga0137390_10490148	Not Available	1203	Open in IMG/M
3300012363\|Ga0137390_11575292	Not Available	595	Open in IMG/M
3300012924\|Ga0137413_10099274	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300012924\|Ga0137413_11127380	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300012924\|Ga0137413_11199641	Not Available	605	Open in IMG/M
3300012924\|Ga0137413_11490228	Not Available	549	Open in IMG/M
3300012925\|Ga0137419_11777742	Not Available	527	Open in IMG/M
3300012927\|Ga0137416_10253971	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300012929\|Ga0137404_10531850	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300012929\|Ga0137404_11172666	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300012929\|Ga0137404_11889441	Not Available	556	Open in IMG/M
3300012930\|Ga0137407_10092618	All Organisms → cellular organisms → Bacteria	2573	Open in IMG/M
3300014501\|Ga0182024_11563577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii	750	Open in IMG/M
3300015171\|Ga0167648_1061486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia pickettii	843	Open in IMG/M
3300015193\|Ga0167668_1021951	All Organisms → cellular organisms → Bacteria → Proteobacteria	1428	Open in IMG/M
3300015203\|Ga0167650_1035852	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300015206\|Ga0167644_1027160	All Organisms → cellular organisms → Bacteria	2373	Open in IMG/M
3300015206\|Ga0167644_1034385	All Organisms → cellular organisms → Bacteria → Proteobacteria	1992	Open in IMG/M
3300015241\|Ga0137418_10404888	All Organisms → cellular organisms → Bacteria → Proteobacteria	1112	Open in IMG/M
3300015264\|Ga0137403_10978456	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300019882\|Ga0193713_1001202	All Organisms → cellular organisms → Bacteria	8600	Open in IMG/M
3300019886\|Ga0193727_1006246	All Organisms → cellular organisms → Bacteria	4799	Open in IMG/M
3300019886\|Ga0193727_1006842	All Organisms → cellular organisms → Bacteria	4565	Open in IMG/M
3300019887\|Ga0193729_1074306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1335	Open in IMG/M
3300019887\|Ga0193729_1123266	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300019887\|Ga0193729_1185794	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300019890\|Ga0193728_1004635	All Organisms → cellular organisms → Bacteria → Proteobacteria	6996	Open in IMG/M
3300019890\|Ga0193728_1293452	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300020002\|Ga0193730_1087014	All Organisms → cellular organisms → Bacteria → Proteobacteria	879	Open in IMG/M
3300020021\|Ga0193726_1000015	All Organisms → cellular organisms → Bacteria → Proteobacteria	570177	Open in IMG/M
3300020021\|Ga0193726_1015168	All Organisms → cellular organisms → Bacteria	4022	Open in IMG/M
3300020021\|Ga0193726_1050454	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300020021\|Ga0193726_1155875	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300020034\|Ga0193753_10002105	All Organisms → cellular organisms → Bacteria	16172	Open in IMG/M
3300020060\|Ga0193717_1007804	All Organisms → cellular organisms → Bacteria → Proteobacteria	5396	Open in IMG/M
3300020199\|Ga0179592_10002426	All Organisms → cellular organisms → Bacteria → Proteobacteria	7738	Open in IMG/M
3300020199\|Ga0179592_10157034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1039	Open in IMG/M
3300020199\|Ga0179592_10325811	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300020579\|Ga0210407_10016114	All Organisms → cellular organisms → Bacteria → Proteobacteria	5548	Open in IMG/M
3300020579\|Ga0210407_10307173	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300020580\|Ga0210403_10043762	All Organisms → cellular organisms → Bacteria	3579	Open in IMG/M
3300020580\|Ga0210403_10105227	All Organisms → cellular organisms → Bacteria	2289	Open in IMG/M
3300020580\|Ga0210403_10111292	All Organisms → cellular organisms → Bacteria	2224	Open in IMG/M
3300020580\|Ga0210403_10523149	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300020581\|Ga0210399_11191302	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300020583\|Ga0210401_10957200	Not Available	715	Open in IMG/M
3300021086\|Ga0179596_10000001	All Organisms → cellular organisms → Bacteria → Proteobacteria	538532	Open in IMG/M
3300021086\|Ga0179596_10016059	All Organisms → cellular organisms → Bacteria	2604	Open in IMG/M
3300021168\|Ga0210406_10038669	All Organisms → cellular organisms → Bacteria	4255	Open in IMG/M
3300021168\|Ga0210406_10163939	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300021170\|Ga0210400_10553281	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300021180\|Ga0210396_11154032	Not Available	650	Open in IMG/M
3300021181\|Ga0210388_10007675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8521	Open in IMG/M
3300021401\|Ga0210393_11368688	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300021406\|Ga0210386_10382999	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300021406\|Ga0210386_11245223	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300021475\|Ga0210392_10545008	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300021478\|Ga0210402_11554614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	589	Open in IMG/M
3300021479\|Ga0210410_11818248	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300022557\|Ga0212123_10187547	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300024283\|Ga0247670_1005140	All Organisms → cellular organisms → Bacteria	2497	Open in IMG/M
3300024288\|Ga0179589_10103494	Not Available	1166	Open in IMG/M
3300025634\|Ga0208589_1030973	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300026291\|Ga0209890_10014957	All Organisms → cellular organisms → Bacteria	3093	Open in IMG/M
3300026551\|Ga0209648_10725479	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300026557\|Ga0179587_10148267	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300027496\|Ga0208987_1004123	All Organisms → cellular organisms → Bacteria	2309	Open in IMG/M
3300027496\|Ga0208987_1020304	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300027727\|Ga0209328_10180344	Not Available	639	Open in IMG/M
3300027908\|Ga0209006_10006243	All Organisms → cellular organisms → Bacteria → Proteobacteria	10800	Open in IMG/M
3300028047\|Ga0209526_10020172	All Organisms → cellular organisms → Bacteria → Proteobacteria	4645	Open in IMG/M
3300028047\|Ga0209526_10034191	All Organisms → cellular organisms → Bacteria	3577	Open in IMG/M
3300028536\|Ga0137415_10289541	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300029951\|Ga0311371_10252131	All Organisms → cellular organisms → Bacteria → Proteobacteria	2547	Open in IMG/M
3300031057\|Ga0170834_108036584	Not Available	549	Open in IMG/M
3300031231\|Ga0170824_111678354	All Organisms → cellular organisms → Bacteria	1844	Open in IMG/M
3300031231\|Ga0170824_128635065	Not Available	1278	Open in IMG/M
3300031232\|Ga0302323_100869243	Not Available	995	Open in IMG/M
3300031446\|Ga0170820_17158266	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300031469\|Ga0170819_17258395	Not Available	786	Open in IMG/M
3300031474\|Ga0170818_109865580	Not Available	821	Open in IMG/M
3300031708\|Ga0310686_109175686	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300031715\|Ga0307476_10101319	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
3300031726\|Ga0302321_100775778	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300031902\|Ga0302322_100717364	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300031902\|Ga0302322_102071104	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300031902\|Ga0302322_103053566	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300032174\|Ga0307470_10453320	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.43%
Aquatic	Environmental → Aquatic	3.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.07%
Peat	Environmental → Terrestrial → Peat	5.36%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.68%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.46%
Loam	Environmental → Terrestrial → Soil → Loam	8.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.36%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.36%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.36%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	4.46%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.46%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.79%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015171	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300015203	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_101181342	3300001545	Forest Soil	VSDKDDHSESNTRYEPSGIEERHGIIPTWLGIVYAVMLVWMVWYTIAFWSDKG*
JGIcombinedJ26739_1007932982	3300002245	Forest Soil	VSDKDSHSESITRYEGPGIEERHGIVPTWLAIVYAVMFVWMVWYTIVFWTDKG*
Ga0058899_108820982	3300004631	Forest Soil	MNDKNDHSDSITRYEPSGIEERHGIIPTWLAIVYVVMFVWMVWYTIAFWTDKG*
Ga0070731_103795112	3300005538	Surface Soil	VSDKDHHSESITRYEPSGIEEKHGIIPMWLAVVYAAMFVWMVWYTIVFWTDKG*
Ga0070763_107037841	3300005610	Soil	VSDKDSHSESITRYEGPGIEERHGIVPLWLAIVYAVMFVWMIWYTIVFWTDKG*
Ga0066789_100613882	3300005994	Soil	VSDKDSHSESITRYEGPGIEERHGIVPIWLAIVYAVMFVWMIWYTIVFWTDKG*
Ga0075028_1005133402	3300006050	Watersheds	VSEKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVYWTDKG*
Ga0073928_100570423	3300006893	Iron-Sulfur Acid Spring	MSDKDDHSESITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTIAFWTDKG*
Ga0073928_103236952	3300006893	Iron-Sulfur Acid Spring	MSDKDDHSESITRYEPSGIEERHGIIPTWLALVYAVMFVWMVWYTIAFWTDKG*
Ga0099793_106121412	3300007258	Vadose Zone Soil	GIEERHGIVPMWLAIVYAAMFVWMIWYTIVFWTDKG*
Ga0099796_100924152	3300010159	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPTWLAIVYAAMFVWMIWYTIVFWTDKG*
Ga0137392_100611901	3300011269	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYTMVFWTDK
Ga0137392_101696252	3300011269	Vadose Zone Soil	MSDKDDHSESITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTVAFWTDKG*
Ga0137392_102230981	3300011269	Vadose Zone Soil	KVSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYTIVFWTDKG*
Ga0137391_113944682	3300011270	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYTIVFWTDKG*
Ga0137393_100745753	3300011271	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYTMVFWTDKG*
Ga0137389_101320181	3300012096	Vadose Zone Soil	TRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVFWTDKG*
Ga0137389_105124251	3300012096	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVFW
Ga0137399_101318122	3300012203	Vadose Zone Soil	VSDKNSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVFWTDKG*
Ga0137399_114648091	3300012203	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPVWLAIVYAAMFVWMIWYTIVFWTDKG*
Ga0137362_108414142	3300012205	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYVVMFVWMIWYTIVFWTDKG*
Ga0137360_110530062	3300012361	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYT
Ga0137390_104901481	3300012363	Vadose Zone Soil	HSESITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTVAFWTDKG*
Ga0137390_115752922	3300012363	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWY
Ga0137398_108645401	3300012683	Vadose Zone Soil	GTGIEERHGIIPTWLAVVYAVMFVWMIWYTVVYWTDKG*
Ga0137413_100992742	3300012924	Vadose Zone Soil	VSDKDTHSESITRYEPSGIEERHGIIPAWLAVVYAAMFVWMVWYTIVFWTDKG*
Ga0137413_111273802	3300012924	Vadose Zone Soil	VSDKESHSESITRYEGPGIEERHGIVPTWLAVVYAVMFVWMIWYTIVFWTDKG*
Ga0137413_111996412	3300012924	Vadose Zone Soil	EAVSDEHDHSKLISRYEVYGIEERHGIVPAWLGVVYAVMLIWMVWYLVAFWTDKG*
Ga0137413_114902282	3300012924	Vadose Zone Soil	VSGKDDHSESLTRYEPSGIEERHGIIPTWLAIVYAALLVWMVWYTIVFWTDKG*
Ga0137419_117777421	3300012925	Vadose Zone Soil	VSEDKDHAHSISVYKTSGIQERHGIIPAWLAVVYGVMLIWMVWYLIAYWTDKG*
Ga0137416_102539712	3300012927	Vadose Zone Soil	MNDKNDHSDSITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTVAFWTDKG*
Ga0137416_104630401	3300012927	Vadose Zone Soil	PGIEERHGIVPMWLAIVYAAMFVWMIWYTIVFWTDKG*
Ga0137404_105318502	3300012929	Vadose Zone Soil	VSEDKGHAHSISVYKTSGIEERHGIIPAWLAVVYGVMLIWMVWYLIAYWTDKG*
Ga0137404_111726662	3300012929	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPVWLAIVYAAMFVWMIWYTIVFW
Ga0137404_118894412	3300012929	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYVAMFVWMIWYTIVFWTDKG*
Ga0137407_100926182	3300012930	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVFWTDKG*
Ga0182024_115635772	3300014501	Permafrost	VSDKDSHSESITRYEGPGIEERHGIVPTWLAVVYAVMFVWMIWYTIVFWTDKG*
Ga0167648_10614862	3300015171	Glacier Forefield Soil	VSDKDSHSESITRYEGPGIEERHGIVPKWLIWMIWYTIAFWTDKG*
Ga0167668_10219513	3300015193	Glacier Forefield Soil	MSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVYWTDKG*
Ga0167650_10358522	3300015203	Glacier Forefield Soil	VSDKDSHSESITRYEGPGIEERHGIVPKWLAIVYAAMFIWMIWYTIAFWTDKG*
Ga0167644_10271602	3300015206	Glacier Forefield Soil	VSEHDDHSESITRYEPSGIEERHGIIPTWLAIVYAALLLWMVWYTIVFWTDKG*
Ga0167644_10343852	3300015206	Glacier Forefield Soil	VSDKDSHSESITRYEGPGIEERHGIVPTWLAIVYAVMFVWMIWYTVVFWTDKG*
Ga0137418_104048882	3300015241	Vadose Zone Soil	MSEEDSHSESITRYEGPGIEERHGIIPTWLAVVYAVMFVWMIWYTIVYWTDKG*
Ga0137403_109784562	3300015264	Vadose Zone Soil	MSDKDTHSESITRYEPSGIEERHGIIPAWLAVVYAAMFVWMVWYTIVFWTDKG*
Ga0193713_10012025	3300019882	Soil	MSDKDTHSESITRYEPSGIEERHGIIPAWLAVVYAAMFVWMVWYTIVFWTDKG
Ga0193727_10062463	3300019886	Soil	MSDKDTHSESITRYEPSGIEERHGIIPAWLAVVYAAMFVWMVWYTIAFWTDKG
Ga0193727_10068423	3300019886	Soil	VSGKDDHSESLTRYEPSGIEERHGIIPKWLAIVYAAMLVWMVWYTIVFWTDKG
Ga0193729_10743062	3300019887	Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVFWTDKG
Ga0193729_11232662	3300019887	Soil	VSEHDDHSGSIARYEPSGIEERHGIIPKWLAIVYAAMLVWMVWYTIVFWTDKG
Ga0193729_11857942	3300019887	Soil	MSDKDDHSESITRYEPSGIEERHGIIPKWLALVYAVMFVWMVWYTIAFWTDKG
Ga0193728_10046357	3300019890	Soil	SITRYEPSGIEERHGIIPAWLAVVYAAMFVWMVWYTIVFWTDKG
Ga0193728_12934522	3300019890	Soil	VSDKDSHSDSITRYEGPGIEERHGIVPTWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0193730_10870141	3300020002	Soil	KVSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVYWTDKG
Ga0193726_100001525	3300020021	Soil	VSEQDDHSETIARYEPSGIEERHGIIPTWLAIVYAALLVWMVWYTIVFWTDKG
Ga0193726_10151684	3300020021	Soil	VSEQDDHSESIARYEPSGIEERHGIIPTWLAIVYAAMLVWMVWYTIVFWTDKG
Ga0193726_10504543	3300020021	Soil	VSDKDSHSESITRYEGPGIEERHGIVPTWLAIVYAAMFVWMIWYTVVFWTDKG
Ga0193726_11558752	3300020021	Soil	VSEHDDHSESIARYEPSGIEERHGIIPTWLAIVYAAMLVWMVWYTIVYWTDKG
Ga0193753_100021056	3300020034	Soil	VSEHDDHSESITRYEPSGIEERHGIIPTWLAIVYAALLLWMVWYTIVFWTDKG
Ga0193717_10078045	3300020060	Soil	VSEHDDHSESIARYEPSGIEERHGIIPTWLAIVYAAMLVWMVWYTIVFWTDKG
Ga0179592_100024267	3300020199	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0179592_101570342	3300020199	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPVWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0179592_103258112	3300020199	Vadose Zone Soil	VSLKDEHSESITRYEPSGIEEKHGIVPTWLAIVYAAMFVWMVWYTIVFW
Ga0210407_100161142	3300020579	Soil	VSDKNSHSESITRYEGPGIEERHGIVPMWLAVVYAAMFVWMIWYTIVFWTDKG
Ga0210407_103071732	3300020579	Soil	VSDKDHHSESITRYEPSGIEEKHGIIPMWLAVVYAAMFVWMVWYTIVFWTDKG
Ga0210403_100437623	3300020580	Soil	VSDKEDHSESTTRYELSGIEERHGIVPTWLGIVYVVMLVWMVWYTIVFWSDKG
Ga0210403_101052272	3300020580	Soil	VSDKDDHSESITRYEVSGIEERHGIIPTWLAIVYAVMFVWMVWYTIAFWTDKG
Ga0210403_101112922	3300020580	Soil	VSDKDHHSESITRYGPSGIEEKHGIIPMWLAVVYAAMFVWMVWYTIVFWTDKG
Ga0210403_105231492	3300020580	Soil	MNDKNDHSDSITRYEPSGIEERHGIIPTWLAIVYVVMFVWMVWYTIAFWTDKG
Ga0210399_111913022	3300020581	Soil	VRDKNSHSESITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0210401_109572002	3300020583	Soil	VNDKDDHSDSITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTIAFWTDKG
Ga0179596_10000001132	3300021086	Vadose Zone Soil	MSDDDNHSESITRYEGPGIEERHGIIPTWLAVVYTVMFVWMIWYTVVYWTDKG
Ga0179596_100160593	3300021086	Vadose Zone Soil	MSEPDDHSESITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTIAFWTDKG
Ga0210406_100386694	3300021168	Soil	VSDKEEHSESTTRYELSGIEERHGIVPTWLGIVYTVMLVWMVWYTIVFWSDKG
Ga0210406_101639392	3300021168	Soil	VSDKDSHSESITRYEGPGIEERHGIVPTWLAIVYAVMFVWMIWYTIVFWTDKG
Ga0210400_105532812	3300021170	Soil	MSDHDDHSNSTNRYEPSGIEERHGIVPAWLGIVYAVMLVWMVWYTIVFWSDKG
Ga0210396_111540321	3300021180	Soil	YRRCPVSDQDPTPEANTRYEPSGIEERHGTIPTWLGIVYAVMLVWMVWYTIVFWSDKG
Ga0210388_100076752	3300021181	Soil	VSDQDPTPEANTRYEPSGIEERHGTIPTWLGIVYAVMLVWMVWYTIVFWSDKG
Ga0210393_113686881	3300021401	Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYT
Ga0210386_103829991	3300021406	Soil	VNDKDDHSDSITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTIA
Ga0210386_112452232	3300021406	Soil	VSEHDNSESNTRYEPSGIEERHGIVPTWLGIVYAVMLVWMVWYTIVFWSDKG
Ga0210392_105450082	3300021475	Soil	MSDKDDHSESITRYEPSGIEERHGIIPTWLALVYAVMFVWMVWYTIAFWTDKG
Ga0210402_115546142	3300021478	Soil	VSDKDSHSDSITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTIVFWTDKG
Ga0210410_118182482	3300021479	Soil	SITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0212123_101875472	3300022557	Iron-Sulfur Acid Spring	MSDKDDHSESITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTIAFWTDKG
Ga0247670_10051403	3300024283	Soil	VSDSGNHSESITRYEGPGIEERHGIVPLWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0179589_101034942	3300024288	Vadose Zone Soil	VSDKDSHSESITRYEGPGIEERHGIVPTWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0208589_10309732	3300025634	Arctic Peat Soil	MSGQDDHSESVNRYDPSGIEEKHGVIPWWLAMVYAALFVWMIWYTIAFWTDRG
Ga0209890_100149573	3300026291	Soil	VSDKDSHAESITRYEGPGIEERHGIVPTWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0209648_107254791	3300026551	Grasslands Soil	MNDKDDHSESITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTVAFWTDKG
Ga0179587_101482672	3300026557	Vadose Zone Soil	VSLKDEHSESITRYEPSGIEEKHGIVPTWLAIVYAAMFVWMVWYTIVFWTDKG
Ga0208987_10041232	3300027496	Forest Soil	VSEQDDHSETIARYEPSGIEERHGIIPTWLAIVYAAMLVWMVWYTIAFWTDKG
Ga0208987_10203042	3300027496	Forest Soil	VSDKDTHSESITRYEPSGIEERHGIIPAWLAVVYAAMFVWMVWYTIVFWTDKG
Ga0209328_101803442	3300027727	Forest Soil	VSDKDSHSDSITRYEGPGIEERHGIIPTWLGIVYAVMLVWMVWYTIAFWSDKG
Ga0209006_100062435	3300027908	Forest Soil	VSDKDSHSESITRYEGPGIEERHGIVPTWLAIVYAVMFVWMVWYTIVFWTDKG
Ga0209526_100201723	3300028047	Forest Soil	VSDKDSHSESITRYEGPGIEERHGIVPMWLAIVYAVMFVWMIWYTVVFWTDKG
Ga0209526_100341912	3300028047	Forest Soil	VSDKDDHSESNTRYEPSGIEERHGIIPTWLGIVYAVMLVWMVWYTIAFWSDKG
Ga0137415_102895412	3300028536	Vadose Zone Soil	MNDKNDHSDSITRYEPSGIEERHGIIPTWLAIVYAVMFVWMVWYTVAFWTDKG
Ga0311371_102521311	3300029951	Palsa	MSDKDVHSDSITRYEGPGIEERHGIIPAWLAMVYLVMFVWMIWYTIVFWTDKG
Ga0170834_1080365842	3300031057	Forest Soil	VSDPDDKSESNTRYEPSGIEEQHGIVPTWLGIVYAAMLVWMVWYTIVFWSDKG
Ga0170824_1116783542	3300031231	Forest Soil	VTDKDTHSDGITRYEGPGIEERHGKIPTWLMIVYIAMSLWMVWYTLKFWTDKG
Ga0170824_1286350652	3300031231	Forest Soil	DSHSESITRYEGPGIEERHGIVPMWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0302323_1008692431	3300031232	Fen	DDHSDSITRYEPSGIEERHGIIPTWLAIVYAAMLVWMVWYTIVFWTDKG
Ga0170820_171582662	3300031446	Forest Soil	VSGKDQHSESITRYEPSGIEEKHGIIPAWLAVVYAVMLVWMVWYTITFWTDKG
Ga0170819_172583952	3300031469	Forest Soil	VSEKDNHSESITRYEGPGIEERHGIVPTWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0170818_1098655801	3300031474	Forest Soil	PARRKKVSEKDNHSESITRYEGPGIEERHGIVPTWLAIVYAAMFVWMIWYTIVFWTDKG
Ga0310686_1091756862	3300031708	Soil	VSDQDPTPEANTRYEPSGIEEQHGIIPLWLGIVYAVMLVWMVWYTIVFWSDKG
Ga0307476_101013192	3300031715	Hardwood Forest Soil	VSDKDHHSESITRYEPSGIEEKHGIIPMWLAAVYAAMFVWMVWYTIVFWTDKG
Ga0302321_1007757782	3300031726	Fen	VSDKDSHSDSITRYEPSGIEERHGIIPAWLAVVYAAMFVWMVWYTIVFWTDKG
Ga0302322_1007173642	3300031902	Fen	VSDKDSHSESVTRYEGPGIEERHGIVPTWLAVVYAAMFIWMIWYTIVFWTDKG
Ga0302322_1020711041	3300031902	Fen	MSDKDDHSDSITRYEPSGIEERHGIIPTWLAIVYAAMLVWMVWYTIVFWTDKG
Ga0302322_1030535662	3300031902	Fen	MSNKDDHADSISRYEPSGIEERHGIIPTWLAIVYAGMFVWMVWYTIVFWTDKG
Ga0307470_104533202	3300032174	Hardwood Forest Soil	VSNQEEHSESTTRYELSGIEERHGIVPTWLGIVYAVMLVWMVWYTIVFWSDKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083812

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences