Metagenome / Metatranscriptome Family F083890

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083890
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	59 residues
Representative Sequence	MSAAKTAAQRQADRKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG
Number of Associated Samples	83
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	52.25 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	83.04 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (45.536 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater (19.643 % of family members)
Environment Ontology (ENVO)	Unclassified (33.929 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (61.607 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.88% β-sheet: 4.71% Coil/Unstructured: 49.41%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01555	N6_N4_Mtase	4.50
PF04448	DUF551	2.70
PF05772	NinB	1.80
PF09588	YqaJ	1.80
PF08291	Peptidase_M15_3	0.90
PF07505	DUF5131	0.90
PF01551	Peptidase_M23	0.90
PF13633	Obsolete Pfam Family	0.90
PF04209	HgmA_C	0.90
PF09954	DUF2188	0.90
PF10765	Phage_P22_NinX	0.90
PF10108	DNA_pol_B_exo2	0.90
PF00589	Phage_integrase	0.90
PF01844	HNH	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	4.50
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	4.50
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	4.50
COG3508	Homogentisate 1,2-dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.90
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
cellular organisms	root	All Organisms → cellular organisms	35.71 %
Viruses	superkingdom	All Organisms → Viruses	18.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.07 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.07 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.68 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.89 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.89 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.07 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	12.50 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.89 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.07 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7.14 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	3.57 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.68 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.07 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	3.57 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1.79 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.79 %
unclassified Nevskiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → unclassified Nevskiales	0.89 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.89 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.89 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.07 %
Candidatus Accumulibacter vicinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	3.57 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.79 %
Undibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium	1.79 %
Nevskiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → unclassified Nevskiales → Nevskiales bacterium	0.89 %
Rhodoferax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax	0.89 %
Rubrivivax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax	0.89 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.07 %
Candidatus Accumulibacter vicinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	3.57 %
Undibacterium oligocarboniphilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → Undibacterium oligocarboniphilum	1.79 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.79 %
unclassified Rhodoferax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → unclassified Rhodoferax	0.89 %
unclassified Rubrivivax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax	0.89 %
Nevskiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → unclassified Nevskiales → Nevskiales bacterium	0.89 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.07 %
Candidatus Accumulibacter vicinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	3.57 %
Undibacterium oligocarboniphilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → Undibacterium oligocarboniphilum	1.79 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.79 %
Rubrivivax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp.	0.89 %
Rhodoferax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → unclassified Rhodoferax → Rhodoferax sp.	0.89 %
Nevskiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → unclassified Nevskiales → Nevskiales bacterium	0.89 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2020627001\|VrWwAS_contig00143	Not Available	543	Open in IMG/M
3300005525\|Ga0068877_10150189	All Organisms → Viruses → Predicted Viral	1424	Open in IMG/M
3300005525\|Ga0068877_10210444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1160	Open in IMG/M
3300005659\|Ga0073900_10171118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	987	Open in IMG/M
3300005664\|Ga0073685_1039951	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300005664\|Ga0073685_1045762	All Organisms → Viruses → Predicted Viral	1232	Open in IMG/M
3300005683\|Ga0074432_111375	Not Available	1278	Open in IMG/M
3300005982\|Ga0075156_10046662	All Organisms → cellular organisms → Bacteria → Proteobacteria	2518	Open in IMG/M
3300005987\|Ga0075158_10070487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2032	Open in IMG/M
3300006030\|Ga0075470_10192942	Not Available	585	Open in IMG/M
3300006056\|Ga0075163_10294892	All Organisms → Viruses → Predicted Viral	1846	Open in IMG/M
3300006805\|Ga0075464_10256396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	1047	Open in IMG/M
3300006875\|Ga0075473_10462506	Not Available	512	Open in IMG/M
3300006917\|Ga0075472_10376472	Not Available	702	Open in IMG/M
3300006920\|Ga0070748_1100303	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1104	Open in IMG/M
3300006920\|Ga0070748_1215559	Not Available	698	Open in IMG/M
3300006920\|Ga0070748_1245052	Not Available	646	Open in IMG/M
3300007321\|Ga0102692_1291803	All Organisms → Viruses → Predicted Viral	1104	Open in IMG/M
3300007516\|Ga0105050_10207414	Not Available	1225	Open in IMG/M
3300007517\|Ga0105045_10146869	All Organisms → cellular organisms → Bacteria → Proteobacteria	1994	Open in IMG/M
3300007517\|Ga0105045_10646033	Not Available	735	Open in IMG/M
3300007517\|Ga0105045_10995835	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300007521\|Ga0105044_10594946	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300007521\|Ga0105044_10630700	Not Available	890	Open in IMG/M
3300007521\|Ga0105044_11264307	Not Available	543	Open in IMG/M
3300007521\|Ga0105044_11303227	Not Available	532	Open in IMG/M
3300007799\|Ga0105049_10345548	All Organisms → cellular organisms → Bacteria → Proteobacteria	1176	Open in IMG/M
3300007799\|Ga0105049_10605865	Not Available	792	Open in IMG/M
3300008450\|Ga0114880_1062083	Not Available	1541	Open in IMG/M
3300008507\|Ga0110934_1029536	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300008807\|Ga0115888_124209	All Organisms → Viruses → Predicted Viral	1352	Open in IMG/M
3300009032\|Ga0105048_11188012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	625	Open in IMG/M
3300009083\|Ga0105047_10392861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1380	Open in IMG/M
3300009084\|Ga0105046_11115073	Not Available	630	Open in IMG/M
3300009199\|Ga0103748_10022408	Not Available	989	Open in IMG/M
3300009295\|Ga0103747_10011420	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1998	Open in IMG/M
3300009654\|Ga0116167_1053888	All Organisms → cellular organisms → Bacteria → Proteobacteria	1639	Open in IMG/M
3300009664\|Ga0116146_1030709	All Organisms → Viruses → Predicted Viral	2733	Open in IMG/M
3300009673\|Ga0116185_1112586	All Organisms → Viruses → Predicted Viral	1335	Open in IMG/M
3300009674\|Ga0116173_1266069	Not Available	777	Open in IMG/M
3300009682\|Ga0116172_10211549	Not Available	994	Open in IMG/M
3300009689\|Ga0116186_1021718	All Organisms → Viruses → Predicted Viral	4115	Open in IMG/M
3300009696\|Ga0116177_10154549	Not Available	1288	Open in IMG/M
3300009715\|Ga0116160_1300833	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300009767\|Ga0116161_1312069	Not Available	630	Open in IMG/M
3300010347\|Ga0116238_10216120	All Organisms → Viruses → Predicted Viral	1327	Open in IMG/M
3300010353\|Ga0116236_11032579	Not Available	644	Open in IMG/M
3300010354\|Ga0129333_10030944	All Organisms → cellular organisms → Bacteria	5054	Open in IMG/M
3300010357\|Ga0116249_10233484	All Organisms → cellular organisms → Bacteria	1706	Open in IMG/M
3300010357\|Ga0116249_11268016	Not Available	660	Open in IMG/M
3300010357\|Ga0116249_11285719	Not Available	655	Open in IMG/M
3300011011\|Ga0139556_1042077	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	674	Open in IMG/M
3300011268\|Ga0151620_1065211	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1181	Open in IMG/M
3300012018\|Ga0119867_1138058	Not Available	650	Open in IMG/M
3300012018\|Ga0119867_1148444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	624	Open in IMG/M
3300013281\|Ga0119917_101383	All Organisms → cellular organisms → Bacteria	1961	Open in IMG/M
3300013372\|Ga0177922_10939352	All Organisms → Viruses → Predicted Viral	2399	Open in IMG/M
3300013800\|Ga0119898_1006709	All Organisms → Viruses → Predicted Viral	1764	Open in IMG/M
3300013800\|Ga0119898_1007998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → unclassified Rhodoferax → Rhodoferax sp.	1578	Open in IMG/M
3300013800\|Ga0119898_1026140	Not Available	761	Open in IMG/M
3300014059\|Ga0119868_1141395	Not Available	679	Open in IMG/M
3300015360\|Ga0163144_10314946	All Organisms → Viruses → Predicted Viral	1973	Open in IMG/M
3300015360\|Ga0163144_10580427	All Organisms → cellular organisms → Bacteria → Proteobacteria	1224	Open in IMG/M
3300015360\|Ga0163144_10634375	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1141	Open in IMG/M
3300015360\|Ga0163144_10844929	Not Available	912	Open in IMG/M
3300017785\|Ga0181355_1034971	Not Available	2161	Open in IMG/M
3300020057\|Ga0163151_10042598	All Organisms → cellular organisms → Bacteria → Proteobacteria	3388	Open in IMG/M
3300020057\|Ga0163151_10311969	Not Available	845	Open in IMG/M
3300020180\|Ga0163155_10012639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp.	7234	Open in IMG/M
3300020186\|Ga0163153_10423979	Not Available	559	Open in IMG/M
3300020192\|Ga0163147_10107643	Not Available	1830	Open in IMG/M
3300020203\|Ga0163148_10174440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → unclassified Nevskiales → Nevskiales bacterium	1242	Open in IMG/M
3300020219\|Ga0163146_10239801	Not Available	1107	Open in IMG/M
3300021440\|Ga0213919_1016052	All Organisms → Viruses → Predicted Viral	1745	Open in IMG/M
3300021440\|Ga0213919_1069202	Not Available	734	Open in IMG/M
3300022222\|Ga0226658_10168334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	1004	Open in IMG/M
3300022222\|Ga0226658_10262156	Not Available	782	Open in IMG/M
3300023242\|Ga0222708_1036979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → Undibacterium oligocarboniphilum	718	Open in IMG/M
3300025445\|Ga0208424_1016748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter vicinus	846	Open in IMG/M
3300025645\|Ga0208643_1032594	All Organisms → Viruses → Predicted Viral	1711	Open in IMG/M
3300025689\|Ga0209407_1134954	Not Available	729	Open in IMG/M
3300025882\|Ga0209097_10244272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	738	Open in IMG/M
3300025887\|Ga0208544_10091707	All Organisms → Viruses → Predicted Viral	1384	Open in IMG/M
3300025896\|Ga0208916_10138423	All Organisms → Viruses → Predicted Viral	1043	Open in IMG/M
3300025896\|Ga0208916_10338809	Not Available	656	Open in IMG/M
3300027776\|Ga0209277_10015298	Not Available	3534	Open in IMG/M
3300027823\|Ga0209490_10123352	All Organisms → Viruses → Predicted Viral	1842	Open in IMG/M
3300027823\|Ga0209490_10272863	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300027823\|Ga0209490_10497380	Not Available	671	Open in IMG/M
3300027823\|Ga0209490_10565825	Not Available	606	Open in IMG/M
3300027850\|Ga0209591_10487429	Not Available	815	Open in IMG/M
3300027850\|Ga0209591_10597424	Not Available	692	Open in IMG/M
3300027850\|Ga0209591_10823987	Not Available	530	Open in IMG/M
(restricted) 3300028568\|Ga0255345_1270084	Not Available	634	Open in IMG/M
3300029349\|Ga0238435_100032	All Organisms → cellular organisms → Bacteria	51285	Open in IMG/M
3300029936\|Ga0119925_106564	Not Available	765	Open in IMG/M
3300031707\|Ga0315291_11113346	Not Available	654	Open in IMG/M
3300031951\|Ga0315904_10172588	Not Available	2159	Open in IMG/M
3300031963\|Ga0315901_10407616	Not Available	1088	Open in IMG/M
3300031999\|Ga0315274_10748384	Not Available	1047	Open in IMG/M
3300032053\|Ga0315284_10693616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → Undibacterium oligocarboniphilum	1197	Open in IMG/M
3300032116\|Ga0315903_10209873	All Organisms → Viruses → Predicted Viral	1721	Open in IMG/M
3300032163\|Ga0315281_10092718	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3525	Open in IMG/M
3300032420\|Ga0335397_10098022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3032	Open in IMG/M
3300032431\|Ga0335395_10591487	All Organisms → cellular organisms → Bacteria → Proteobacteria	694	Open in IMG/M
3300033978\|Ga0334977_0353423	Not Available	695	Open in IMG/M
3300033979\|Ga0334978_0006716	All Organisms → cellular organisms → Bacteria → Proteobacteria	6217	Open in IMG/M
3300033979\|Ga0334978_0006716	All Organisms → cellular organisms → Bacteria → Proteobacteria	6217	Open in IMG/M
3300033981\|Ga0334982_0024012	All Organisms → cellular organisms → Bacteria → Proteobacteria	3527	Open in IMG/M
3300033994\|Ga0334996_0021897	All Organisms → cellular organisms → Bacteria → Proteobacteria	4148	Open in IMG/M
3300034280\|Ga0334997_0120285	Not Available	1758	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.64%
Engineered	Engineered	30.36%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	69.64%
Wastewater	Engineered → Wastewater	28.57%
Bioreactor	Engineered → Bioreactor	0.89%
Built Environment	Engineered → Built Environment	0.89%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	57.14%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	14.29%
Marine	Environmental → Aquatic → Marine	11.61%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	7.14%
Activated Sludge	Engineered → Wastewater → Activated Sludge	3.57%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	2.68%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.89%
Unclassified	Engineered → Wastewater → Unclassified	0.89%
Continuous Culture	Engineered → Bioreactor → Continuous Culture	0.89%
Water Treatment Plant	Engineered → Built Environment → Water Treatment Plant	0.89%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	25.00%
Ice	Environmental → Aquatic → Freshwater → Ice	19.64%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	14.29%
Coastal	Environmental → Aquatic → Marine → Coastal	11.61%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.57%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	3.57%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified	3.57%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.68%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified	2.68%
Biological Phosphorus Removal	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal	2.68%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.79%
Creek	Environmental → Aquatic → Freshwater → Creek	1.79%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.89%
Unclassified	Engineered → Wastewater → Unclassified → Unclassified	0.89%
Dissolved Organics (Aerobic)	Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic)	0.89%
Marine Sediment Inoculum	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum	0.89%
Unclassified	Engineered → Built Environment → Water Treatment Plant → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	21.43%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	19.64%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	14.29%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	11.61%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	3.57%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.57%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	3.57%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.68%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified	2.68%
Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Unclassified → Unclassified → Unclassified	0.89%
Activated Sludge	Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge	0.89%
Unclassified	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified	0.89%
Unclassified	Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	19.64%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	14.29%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	11.61%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	10.71%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.25%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	3.57%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.57%
Wastewater Effluent	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent	3.57%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.68%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.68%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	2.68%
Wastewater	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater	2.68%
Aquatic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic	1.79%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	1.79%
Activated Sludge	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Activated Sludge	1.79%
Wastewater Sludge	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge	1.79%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.89%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.89%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.89%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.89%
Wastewater	Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater	0.89%
Lab-Scale Ebpr Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Lab-Scale Ebpr Bioreactor	0.89%
Wastewater	Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater	0.89%
Sbr_Wastewater	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Sbr_Wastewater	0.89%
Wastewater	Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2020627001	Viral communities in wastewater treatment process (AS)	Engineered	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005659	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Kit	Engineered	Open in IMG/M
3300005664	Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA	Environmental	Open in IMG/M
3300005683	Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91802 Phage Sequencing	Engineered	Open in IMG/M
3300005982	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown DNA	Engineered	Open in IMG/M
3300005987	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B DNA	Engineered	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006056	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA	Engineered	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental	Open in IMG/M
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007321	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007516	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01	Environmental	Open in IMG/M
3300007517	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (megahit assembly)	Environmental	Open in IMG/M
3300007521	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01	Environmental	Open in IMG/M
3300007799	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-06	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300008507	Wastewater microbial communities from the domestic sewers in Singapore - Site 2	Engineered	Open in IMG/M
3300008807	Wastewater viral communities from SBR reactor in SCELSE, Singapore - ContigAbv1k	Engineered	Open in IMG/M
3300009032	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-05	Environmental	Open in IMG/M
3300009083	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (megahit assembly)	Environmental	Open in IMG/M
3300009084	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-03 (megahit assembly)	Environmental	Open in IMG/M
3300009199	Microbial communities of wastewater sludge from Singapore - Sludge7_b2_February	Environmental	Open in IMG/M
3300009295	Microbial communities of wastewater sludge from Singapore - Sludge5_b2_February	Environmental	Open in IMG/M
3300009654	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG	Engineered	Open in IMG/M
3300009664	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG	Engineered	Open in IMG/M
3300009673	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaG	Engineered	Open in IMG/M
3300009674	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG	Engineered	Open in IMG/M
3300009682	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC083_MetaG	Engineered	Open in IMG/M
3300009689	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG	Engineered	Open in IMG/M
3300009696	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG	Engineered	Open in IMG/M
3300009715	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG	Engineered	Open in IMG/M
3300009767	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS3_MetaG	Engineered	Open in IMG/M
3300010347	AD_JPHGca	Engineered	Open in IMG/M
3300010353	AD_USCAca	Engineered	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010357	AD_USSTca	Engineered	Open in IMG/M
3300011011	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m	Environmental	Open in IMG/M
3300011268	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555	Environmental	Open in IMG/M
3300012018	Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Activated sludge (MBR)	Engineered	Open in IMG/M
3300013281	Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V91307	Engineered	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300013800	Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - ZZ_EW_meta	Engineered	Open in IMG/M
3300014059	Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Membrane foulants	Engineered	Open in IMG/M
3300015360	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300020057	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2	Environmental	Open in IMG/M
3300020180	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.SP4.G1	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300020192	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP6.G1	Environmental	Open in IMG/M
3300020203	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP7.P2	Environmental	Open in IMG/M
3300020219	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP7.G1	Environmental	Open in IMG/M
3300021440	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MG	Environmental	Open in IMG/M
3300022222	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1 (v2)	Environmental	Open in IMG/M
3300023242	Saline water microbial communities from Ace Lake, Antarctica - #1576	Environmental	Open in IMG/M
3300025445	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025645	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)	Environmental	Open in IMG/M
3300025689	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG3_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025882	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC052_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025887	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027776	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown DNA (SPAdes)	Engineered	Open in IMG/M
3300027823	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-06 (SPAdes)	Environmental	Open in IMG/M
3300027850	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01 (SPAdes)	Environmental	Open in IMG/M
3300028568 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant20	Engineered	Open in IMG/M
3300029349	Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103	Environmental	Open in IMG/M
3300029936	Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V92206	Engineered	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032420	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (spades assembly)	Environmental	Open in IMG/M
3300032431	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (spades assembly)	Environmental	Open in IMG/M
3300033978	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002	Environmental	Open in IMG/M
3300033979	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003	Environmental	Open in IMG/M
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300034280	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
AS_223410	2020627001	Wastewater	MSHETFAPKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARRRASAEQKA
Ga0068877_101501895	3300005525	Freshwater Lake	MNAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG*
Ga0068877_102104442	3300005525	Freshwater Lake	MNPAKTDAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLAKKRARAVALCLAG*
Ga0073900_101711183	3300005659	Activated Sludge	LEVNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARKRARAEQKAG*
Ga0073685_10399511	3300005664	Aquatic	MTSAKTDAQRQADRKARELAAGRVQWKRWVHPDDVPALTEYAEKLARKRARSERAG*
Ga0073685_10457622	3300005664	Aquatic	MTTAKTAAQRQAERKARELAAGRVHWKRWVHPGDVPALTEYADKLARKRARAEQKAG*
Ga0074432_1113751	3300005683	Lab-Scale Ebpr Bioreactor	LTAAKTPAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRARAEQKAG*
Ga0075156_100466626	3300005982	Wastewater Effluent	MTAKTPAQRQADRKKRELAAGRVQWKRWVHPDDVPALVEYADKLARRREREARKSVPL*
Ga0075158_100704872	3300005987	Wastewater Effluent	MNAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPTLTEYAEKLARKRARSERAG*
Ga0075470_101929422	3300006030	Aqueous	VNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARKRARAEQKAG*
Ga0075163_102948925	3300006056	Wastewater Effluent	MTAAKTDAERQAARKARELAAGRVQWKRWVHPDDVPALAEYANKLARKRARAEQKAG*
Ga0075464_102563961	3300006805	Aqueous	MSPAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYAEKLARKRAHSERAG*
Ga0075473_104625061	3300006875	Aqueous	VNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARRRGRAEKKAG*
Ga0075472_103764721	3300006917	Aqueous	RPMSPAKTAAQRQADRKAREIDAGRVQWKRWVHPDDVPALTEYAEKLARKRARAEQKAG*
Ga0070748_11003032	3300006920	Aqueous	LEVNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARRRARAEQKAG*
Ga0070748_12155593	3300006920	Aqueous	MTSAKTDAQRQADRKARELAAGRVQWKRWVHPEDVPALTEYAEKLARKRARSERAG*
Ga0070748_12450522	3300006920	Aqueous	AQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARKRARAEQKAG*
Ga0102692_12918033	3300007321	Freshwater Lake	MSIAKTPAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG*
Ga0105050_102074143	3300007516	Freshwater	MTGPKTPAERQAERKARETAAGRVQIKRWVHPDDVPALHAEAERLERKRLRGLKRANVNSTAHRAA*
Ga0105045_101468694	3300007517	Freshwater	MTAKTDAQRQADRKAREIEAGRVHYKRWVNPDDVPAMHAEAERLERKRLRGLKRANVNSTAQSAV*
Ga0105045_106460331	3300007517	Freshwater	MTAATPAQRQADRKARETAAGRVHYKRWVHPDDVPAMHAEAERLERKRVRELKWAN
Ga0105045_109958351	3300007517	Freshwater	MTDPKTPAQRQADRKTREIEAGRVQFKRWVHPDDVPAMHAEAERLERKRLRELKRANFNS
Ga0105044_105949463	3300007521	Freshwater	MDSLGHAGIARMTAKTPAQRQAERKARETAAGRVHYKRWVHPDDVPAMHAEAERLE
Ga0105044_106307002	3300007521	Freshwater	MTAKTAAQRQADRKARETEAGRVHYKRWVHPDDVPAMHAEAERLERKRLRGLKRANV*
Ga0105044_112643072	3300007521	Freshwater	MTAKTPAQRQADRKVREIEAGRVHYKRWVHPDDVPAMHAEAERLERKRLRGLKRANVADKRDTTA*
Ga0105044_113032271	3300007521	Freshwater	MTAKTDAQRQADRKARETEAGRVHYKRWVHPDDVPAMHAEAERLERKRLRGLKR
Ga0105049_103455483	3300007799	Freshwater	MDSLGRAGIARMTAKTPAQRQAERKARETAAGRVHYKRWVHPDDVPAMHAQAERLERKRLRGLKRANVEAKAPT
Ga0105049_106058651	3300007799	Freshwater	VTAATPAKRQADRKARETAAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVEAKAPT*
Ga0114880_10620833	3300008450	Freshwater Lake	MSPAKTAAERQADRKARELAAGRVQWKRWVHPDDLPALTEYADKLARKRARAEQKAG*
Ga0110934_10295361	3300008507	Wastewater	VDAMTTAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRDRAEQKAG
Ga0115888_1242094	3300008807	Sbr_Wastewater	MSHETFAPKTAAQRQAERKARELAAGRVQWKRWVHTDDVPALAEYADKLARRRARAEQKAG*
Ga0105048_111880123	3300009032	Freshwater	MTAPNTAAERQADRKTRETDAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANGPVEPDTTARIEA*
Ga0105047_103928613	3300009083	Freshwater	VTAKTDAQRQAERKAREAAAGRVQFKRWVHPDDVPAMHAEAERLERKRVRELKRANVKLKGAPR*
Ga0105046_111150731	3300009084	Freshwater	MTAATPAQRQADRKARETAAGRVHYKRWVHPDDVPAMHAEAERLERKRVRELKW
Ga0103748_100224081	3300009199	Wastewater Sludge	MTTAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAESADKLARKRDRAEQKAG*
Ga0103747_100114203	3300009295	Wastewater Sludge	MSHETFAPKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARRRASAEQKAG*
Ga0116167_10538883	3300009654	Anaerobic Digestor Sludge	LTPAKTAAQRQADRKARELAAGRVQWKRWVHPDDVPALAGYADKLARKRARAEQKAG*
Ga0116146_10307097	3300009664	Anaerobic Digestor Sludge	MGAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRARSEKAG*
Ga0116185_11125863	3300009673	Anaerobic Digestor Sludge	MSHDDWATIELDPQLGEYVYMNAKTDAQRQADRKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRTRAEQKAG*
Ga0116173_12660692	3300009674	Anaerobic Digestor Sludge	VNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARKR
Ga0116172_102115492	3300009682	Anaerobic Digestor Sludge	VNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARRRARAEQKAG*
Ga0116186_10217181	3300009689	Anaerobic Digestor Sludge	LDPQLGEYVYMNAKTDAQRQADRKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRTRAEQKAG*
Ga0116177_101545492	3300009696	Anaerobic Digestor Sludge	MSTETFAPKTAAQRQADRKARELAAGRVQWTRWVHPDDVPALAEYADKLARKRARAEQKAG*
Ga0116160_13008331	3300009715	Anaerobic Digestor Sludge	AKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRARSERAG*
Ga0116161_13120691	3300009767	Anaerobic Digestor Sludge	TIELDPQLGEYVYMNAKTDAQRQADRKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRTRAEQKAG*
Ga0116238_102161205	3300010347	Anaerobic Digestor Sludge	MTTAKTAAQRQAERKARELAAGRVQWKRWIHPDDVPALAEYADKLARKRARAEQKAG*
Ga0116236_110325792	3300010353	Anaerobic Digestor Sludge	MSAETFKPKTAAQRQAERKAREEAAGRKHYKRWLHPDDFAAMDELAAKLARKRARAEQKAG*
Ga0129333_100309444	3300010354	Freshwater To Marine Saline Gradient	MSAAKTAAQRQAERKAREIAAGRVQWKRWVHPDDMPALTEYADKLARKRARAEQKAG*
Ga0116249_102334844	3300010357	Anaerobic Digestor Sludge	MNTAKTAAQRQADRKARELAAGRVHWKRWVHPDDVPALTEYADKLAKKRA
Ga0116249_112680161	3300010357	Anaerobic Digestor Sludge	MIAQTAAQRQAERKARELAAGRVQWKRWVHPDDVPSLTEYADKLARKRARSERAG*
Ga0116249_112857191	3300010357	Anaerobic Digestor Sludge	PKTAAQRQADRKARELAAGRVHWKRWVHPDDVPALTEYADKLAKKRARAEQKAG*
Ga0139556_10420771	3300011011	Freshwater	VNAAKTAAQRQADRKSRELAAGHVQWKRWVHPDDVPALTEYAEKLARKRARAEQKAG*
Ga0151620_10652111	3300011268	Freshwater	MTTAKTAAQRQAERKARELAAGRVHWKRWVHPDDVPALTEYADKLARKRARSERAG*
Ga0119867_11380582	3300012018	Activated Sludge	VNAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRASAEQKAG*
Ga0119867_11484442	3300012018	Activated Sludge	VTAAKTTAQRQADRKAREVAAGRVQWKRWIHPDDVPALAEYADKLQRKRERQQKISFQNGQ*
Ga0119917_1013832	3300013281	Activated Sludge	LTAAKTPAQRQAERKARELAAGRVQWKRWVHPEHVSALAEYADKLARKRARAEQKAG*
Ga0177922_109393528	3300013372	Freshwater	VNAAKTAAQRQADRKSRELAAGHVQWKRWVHPDDVPALTEYAEKLAR
Ga0119898_10067092	3300013800	Wastewater	MSHETFVPKTDAQRQAERKARETAAGNKQYKRWVHPDDFAALDELAAKLARKRERKARAG
Ga0119898_10079982	3300013800	Wastewater	MSAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRVRAEQKAG*
Ga0119898_10261401	3300013800	Wastewater	MSAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRARAEQKAG*
Ga0119868_11413952	3300014059	Activated Sludge	MGKVDAMTTAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRDRAEQKAG*
Ga0163144_103149463	3300015360	Freshwater Microbial Mat	MTGPKTDAQRQADRKARETAAGRVHFKRWVYPDDVPAMHAEAERLERKRLRGLKRTNDLS
Ga0163144_105804273	3300015360	Freshwater Microbial Mat	MTDPKTPAQRQADRKARETEAGRVQFKRWVHPDDVPAMHAEAERLERKRVRDLKRANA*
Ga0163144_106343751	3300015360	Freshwater Microbial Mat	MTAATPAQRQADRKARETEAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANV*
Ga0163144_108449293	3300015360	Freshwater Microbial Mat	MTGPKTPAKRQAERKAREIEAGRVQFKRWVHPDDVPALHAEAERLERKRLRGLKRANVNSTAHRAA*
Ga0181355_10349711	3300017785	Freshwater Lake	MTTAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYAEKLARKRARSERAG
Ga0163151_100425987	3300020057	Freshwater Microbial Mat	MTGPKTDAQRQADRKARETAAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANDEAEPETTHDQA
Ga0163151_103119691	3300020057	Freshwater Microbial Mat	MTGPKTDAQRQADRRVRETEAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANV
Ga0163155_100126399	3300020180	Freshwater Microbial Mat	MTSAKTPAQRQADRKARETAAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANV
Ga0163153_104239792	3300020186	Freshwater Microbial Mat	MTGPKTDAQRQADRKARETAAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVGIQRRP
Ga0163147_101076435	3300020192	Freshwater Microbial Mat	MTAATPAQRQADRKARETEAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVRAKPDGAVLRDGSA
Ga0163148_101744402	3300020203	Freshwater Microbial Mat	MTGPKTDAQRQADRRVRETEAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVEAKAPT
Ga0163146_102398014	3300020219	Freshwater Microbial Mat	MTAATPAQRQADRKARETAAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVRANLDPTARDET
Ga0213919_10160524	3300021440	Freshwater	MNAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG
Ga0213919_10692021	3300021440	Freshwater	VALTDKPKTDAQRQAERKARELAAGRVQFKRWVHPDDKAALAEYAAKLADDRAKK
Ga0226658_101683342	3300022222	Freshwater Microbial Mat	MTAKTPAQRQADRKTREIDAGRVHYKRWVHPDDVPALTEYAEKLARRRAKLVAKRAP
Ga0226658_102621561	3300022222	Freshwater Microbial Mat	MTGPKTPAKRQAERKAREIEAGRVQFKRWVHPDDVPALHAEAERLERKRLRGLKRANVNSTAHRAA
Ga0222708_10369791	3300023242	Saline Water	VTAKTDAERQADRKTRETAAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVEAKPDAKAAGRSGSA
Ga0208424_10167481	3300025445	Aqueous	VNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARKRARAEQKAG
Ga0208643_10325946	3300025645	Aqueous	VNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARRRARAEQKAG
Ga0209407_11349542	3300025689	Anaerobic Digestor Sludge	VNCPKNLEGSMGAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRARSEKAG
Ga0209097_102442722	3300025882	Anaerobic Digestor Sludge	FLAAVHCSRSMTSAKTDAQRQADRKARELAAGRVQWKRWVHPDDVPALTEYAEKLARKRARSERAG
Ga0208544_100917072	3300025887	Aqueous	VNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG
Ga0208916_101384234	3300025896	Aqueous	VNAAKTAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLAR
Ga0208916_103388092	3300025896	Aqueous	TAAQRQADRKSRELAAGRVQWKRWVHPDDVPALTEYAEKLARKRARAEQKAG
Ga0209277_100152986	3300027776	Wastewater Effluent	MTAKTPAQRQADRKKRELAAGRVQWKRWVHPDDVPALVEYADKLARRREREARKSVPL
Ga0209490_101233523	3300027823	Freshwater	MTGPKTAAERQADRKVRETTAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVADKRDTTA
Ga0209490_102728633	3300027823	Freshwater	MTAKTPAQRQADRKARETEAGRVHYKRWVHPDDVPAMHAEADRLERK
Ga0209490_104973802	3300027823	Freshwater	VTAATPAKRQADRKARETAAGRVQFKRWVHPDDVPAMHAEAERLGRKRLRGLKRANDEAEPET
Ga0209490_105658253	3300027823	Freshwater	MTAKTAAQRQADRKARETEAGRVHYKRWVHPDDVPAMHAEAERLERKRLRGLKRANV
Ga0209591_104874291	3300027850	Freshwater	MTAAKTDAQRQADRKARETTAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLK
Ga0209591_105974243	3300027850	Freshwater	MTAKTDAQRQADRKARETEAGRVHYKRWVHPDDVPAMHAEAERLERKRLRGLKRANV
Ga0209591_108239872	3300027850	Freshwater	MTGPKTDAQRQADRKARETAAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVADKRDTTA
(restricted) Ga0255345_12700842	3300028568	Wastewater	AQRQAERKARELAAGRVQWKRWVHPDDVPALTEYAEKLARNRARAEQKAG
Ga0238435_1000329	3300029349	Freshwater	MNAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARSERAG
Ga0119925_1065643	3300029936	Activated Sludge	LTAAKTPAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRARAEQKAG
Ga0315291_111133461	3300031707	Sediment	LKCIAEMSIETLKPKTPAQRQAERKARELAAGRVQWKRWVHPDDVPAMREHAAKLARKRSKVGR
Ga0315904_101725882	3300031951	Freshwater	MSPAKTAAERQADRKARELAAGRVQWKRWVHPDDLPALTEYADKLARKRARAEQKAG
Ga0315901_104076161	3300031963	Freshwater	MNAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAE
Ga0315274_107483842	3300031999	Sediment	MSPAKTAAQRQAERKARELAAGRVQWKRWVRPDDVPALTEYAEKLARKRARSERAG
Ga0315284_106936162	3300032053	Sediment	MTAAKTAAKTAAERQADRKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARSERAG
Ga0315903_102098736	3300032116	Freshwater	MSPAKTAAERQADRKARELAAGRVQWKRWVHPDDLPALTEYADKLARKRARAEQK
Ga0315281_1009271810	3300032163	Sediment	VSPAKTAAERQADRKARELAAGRVQWKRWVHPDYVPALTEYAEKLARKRARSERSV
Ga0335397_100980229	3300032420	Freshwater	VTAKTDAQRQAERKAREAAAGRVQFKRWVHPDDVPAMHAEAERLERKRVRELKRANVKLKGAPR
Ga0335395_105914873	3300032431	Freshwater	MTDPKTPAQRQADRKTREIEAGRVQFKRWVHPDDVPAMHAEAERLERKRLRGLKRANVNSTAQSAV
Ga0334977_0353423_137_295	3300033978	Freshwater	MTAQTPAQRQAALKARRIADGLVHWKRWVHPDDVPHLVALADKLARKRAKAP
Ga0334978_0006716_3125_3298	3300033979	Freshwater	MASAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG
Ga0334978_0006716_5383_5556	3300033979	Freshwater	MSAAKTAAQRQADRKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG
Ga0334982_0007422_5367_5540	3300033981	Freshwater	MTAQTPAQRQAAMKARRIADGLIHWKRWVHPDDVPHLVALADKLARKRARGLGTESA
Ga0334982_0024012_1285_1446	3300033981	Freshwater	MTAQTPAQRQAAMKARRIADGLVHWKRWVHPDDVPHLVALADKLARKRAKEKQ
Ga0334996_0021897_3824_3997	3300033994	Freshwater	MSAAKTAAERQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG
Ga0334997_0120285_458_628	3300034280	Freshwater	MNAAKTAAQRQAERKAREIAAGRVHWKRWVHPDDVPALTECADKLQRKRSRIKRAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters