Metagenome / Metatranscriptome Family F084472

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084472
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	71 residues
Representative Sequence	VEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALHDLGFVTVSVTTLVSESVYWNRD
Number of Associated Samples	62
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	67.27 %
% of genes near scaffold ends (potentially truncated)	33.04 %
% of genes from short scaffolds (< 2000 bps)	74.11 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.679 % of family members)
Environment Ontology (ENVO)	Unclassified (69.643 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (82.143 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.42% β-sheet: 34.38% Coil/Unstructured: 55.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00072	Response_reg	9.82
PF00196	GerE	6.25
PF07589	PEP-CTERM	4.46
PF03795	YCII	2.68
PF13545	HTH_Crp_2	1.79
PF13354	Beta-lactamase2	1.79
PF05163	DinB	1.79
PF12844	HTH_19	1.79
PF07885	Ion_trans_2	1.79
PF04338	DUF481	0.89
PF01738	DLH	0.89
PF13387	DUF4105	0.89
PF02127	Peptidase_M18	0.89
PF00589	Phage_integrase	0.89
PF04203	Sortase	0.89
PF00722	Glyco_hydro_16	0.89
PF11453	DUF2950	0.89
PF01758	SBF	0.89
PF14023	DUF4239	0.89
PF02659	Mntp	0.89
PF09865	DUF2092	0.89
PF12850	Metallophos_2	0.89
PF13188	PAS_8	0.89
PF03466	LysR_substrate	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.68
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.79
COG1362	Aspartyl aminopeptidase	Amino acid transport and metabolism [E]	0.89
COG1363	Putative aminopeptidase FrvX	Carbohydrate transport and metabolism [G]	0.89
COG1971	Putative Mn2+ efflux pump MntP	Inorganic ion transport and metabolism [P]	0.89
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.89
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	0.89
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15.18 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.14 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	15.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.89 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.89 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.89 %
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.89 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.89 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	0.89 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.89 %
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	0.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.89 %
unclassified Anaerolineaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae	0.89 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.89 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.89 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Anaerolineaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	0.89 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.89 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.89 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.89 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10113692	Not Available	1114	Open in IMG/M
3300001867\|JGI12627J18819_10122655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1067	Open in IMG/M
3300001867\|JGI12627J18819_10304234	Not Available	642	Open in IMG/M
3300002245\|JGIcombinedJ26739_100117883	All Organisms → cellular organisms → Bacteria	2498	Open in IMG/M
3300004103\|Ga0058903_1511578	Not Available	532	Open in IMG/M
3300004631\|Ga0058899_12079024	Not Available	556	Open in IMG/M
3300005437\|Ga0070710_10508189	Not Available	826	Open in IMG/M
3300005541\|Ga0070733_10014494	All Organisms → cellular organisms → Bacteria	4951	Open in IMG/M
3300005542\|Ga0070732_10016331	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4148	Open in IMG/M
3300005602\|Ga0070762_10943549	Not Available	590	Open in IMG/M
3300005602\|Ga0070762_11078523	Not Available	553	Open in IMG/M
3300006176\|Ga0070765_101809126	Not Available	573	Open in IMG/M
3300011120\|Ga0150983_11557301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1115	Open in IMG/M
3300011120\|Ga0150983_13291881	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300011120\|Ga0150983_14444196	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300011120\|Ga0150983_15835767	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	537	Open in IMG/M
3300014501\|Ga0182024_10306801	All Organisms → cellular organisms → Bacteria	2094	Open in IMG/M
3300020579\|Ga0210407_10129094	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300020579\|Ga0210407_10136397	All Organisms → cellular organisms → Bacteria → Acidobacteria	1885	Open in IMG/M
3300020579\|Ga0210407_10633007	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300020580\|Ga0210403_10058021	All Organisms → cellular organisms → Bacteria	3100	Open in IMG/M
3300020580\|Ga0210403_10127004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2078	Open in IMG/M
3300020580\|Ga0210403_10439624	Not Available	1063	Open in IMG/M
3300020580\|Ga0210403_11178327	Not Available	591	Open in IMG/M
3300020580\|Ga0210403_11201034	Not Available	584	Open in IMG/M
3300020580\|Ga0210403_11464972	Not Available	515	Open in IMG/M
3300020581\|Ga0210399_10012153	All Organisms → cellular organisms → Bacteria	6745	Open in IMG/M
3300020581\|Ga0210399_10042126	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3659	Open in IMG/M
3300020581\|Ga0210399_10455999	Not Available	1065	Open in IMG/M
3300020581\|Ga0210399_10794850	Not Available	773	Open in IMG/M
3300020581\|Ga0210399_10909290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	713	Open in IMG/M
3300020581\|Ga0210399_11172249	Not Available	611	Open in IMG/M
3300020581\|Ga0210399_11462760	Not Available	531	Open in IMG/M
3300020581\|Ga0210399_11513453	Not Available	520	Open in IMG/M
3300020582\|Ga0210395_10056384	All Organisms → cellular organisms → Bacteria → Acidobacteria	2880	Open in IMG/M
3300020583\|Ga0210401_10220295	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1756	Open in IMG/M
3300020583\|Ga0210401_10712831	Not Available	864	Open in IMG/M
3300020583\|Ga0210401_11306116	Not Available	583	Open in IMG/M
3300021168\|Ga0210406_10017924	All Organisms → cellular organisms → Bacteria → Acidobacteria	6674	Open in IMG/M
3300021168\|Ga0210406_10023270	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	5730	Open in IMG/M
3300021168\|Ga0210406_10044867	All Organisms → cellular organisms → Bacteria → Proteobacteria	3898	Open in IMG/M
3300021168\|Ga0210406_10050621	All Organisms → cellular organisms → Bacteria	3639	Open in IMG/M
3300021168\|Ga0210406_11031011	Not Available	610	Open in IMG/M
3300021171\|Ga0210405_10014448	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	6551	Open in IMG/M
3300021171\|Ga0210405_10043916	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3547	Open in IMG/M
3300021171\|Ga0210405_10356078	Not Available	1154	Open in IMG/M
3300021178\|Ga0210408_11300855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	551	Open in IMG/M
3300021180\|Ga0210396_10003599	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15398	Open in IMG/M
3300021180\|Ga0210396_10773715	Not Available	825	Open in IMG/M
3300021181\|Ga0210388_10260668	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300021181\|Ga0210388_10845195	Not Available	791	Open in IMG/M
3300021181\|Ga0210388_10902167	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	762	Open in IMG/M
3300021401\|Ga0210393_10067073	All Organisms → cellular organisms → Bacteria	2829	Open in IMG/M
3300021401\|Ga0210393_10278945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1357	Open in IMG/M
3300021401\|Ga0210393_10288444	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1333	Open in IMG/M
3300021403\|Ga0210397_10620076	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300021405\|Ga0210387_10434288	Not Available	1165	Open in IMG/M
3300021405\|Ga0210387_10900858	Not Available	778	Open in IMG/M
3300021405\|Ga0210387_11183692	Not Available	664	Open in IMG/M
3300021407\|Ga0210383_10372802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1231	Open in IMG/M
3300021407\|Ga0210383_11071793	Not Available	681	Open in IMG/M
3300021407\|Ga0210383_11792462	Not Available	501	Open in IMG/M
3300021420\|Ga0210394_10051048	All Organisms → cellular organisms → Bacteria → Proteobacteria	3613	Open in IMG/M
3300021420\|Ga0210394_10500007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1070	Open in IMG/M
3300021420\|Ga0210394_11272129	Not Available	629	Open in IMG/M
3300021420\|Ga0210394_11639686	Not Available	540	Open in IMG/M
3300021432\|Ga0210384_10606083	Not Available	983	Open in IMG/M
3300021432\|Ga0210384_11885299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300021433\|Ga0210391_10443654	Not Available	1019	Open in IMG/M
3300021433\|Ga0210391_11200648	Not Available	587	Open in IMG/M
3300021474\|Ga0210390_10229859	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300021478\|Ga0210402_10268983	Not Available	1575	Open in IMG/M
3300021479\|Ga0210410_11302609	Not Available	619	Open in IMG/M
3300022528\|Ga0242669_1015754	Not Available	1040	Open in IMG/M
3300022533\|Ga0242662_10142737	Not Available	718	Open in IMG/M
3300022726\|Ga0242654_10058366	Not Available	1114	Open in IMG/M
3300025898\|Ga0207692_10592739	Not Available	712	Open in IMG/M
3300026551\|Ga0209648_10176641	All Organisms → cellular organisms → Bacteria → Acidobacteria	1657	Open in IMG/M
3300027050\|Ga0209325_1033145	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300027061\|Ga0209729_1003170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1593	Open in IMG/M
3300027090\|Ga0208604_1019772	Not Available	640	Open in IMG/M
3300027109\|Ga0208603_1044610	Not Available	680	Open in IMG/M
3300027326\|Ga0209731_1065451	Not Available	561	Open in IMG/M
3300027371\|Ga0209418_1002799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2227	Open in IMG/M
3300027371\|Ga0209418_1061411	Not Available	670	Open in IMG/M
3300027605\|Ga0209329_1037072	Not Available	1022	Open in IMG/M
3300027635\|Ga0209625_1043780	Not Available	999	Open in IMG/M
3300027842\|Ga0209580_10226045	All Organisms → cellular organisms → Bacteria → Acidobacteria	930	Open in IMG/M
3300027855\|Ga0209693_10024614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	2915	Open in IMG/M
3300027867\|Ga0209167_10448014	Not Available	706	Open in IMG/M
3300027869\|Ga0209579_10205302	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300027884\|Ga0209275_10047822	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2044	Open in IMG/M
3300027908\|Ga0209006_10020665	All Organisms → cellular organisms → Bacteria	5965	Open in IMG/M
3300028906\|Ga0308309_10017559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	4651	Open in IMG/M
3300031057\|Ga0170834_101679356	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1797	Open in IMG/M
3300031715\|Ga0307476_10008485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6327	Open in IMG/M
3300031718\|Ga0307474_10263602	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300031753\|Ga0307477_10619097	Not Available	729	Open in IMG/M
3300031754\|Ga0307475_10124302	All Organisms → cellular organisms → Bacteria → Acidobacteria	2034	Open in IMG/M
3300031754\|Ga0307475_10467100	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300031754\|Ga0307475_10901344	Not Available	698	Open in IMG/M
3300031754\|Ga0307475_11516954	Not Available	514	Open in IMG/M
3300031820\|Ga0307473_10362593	Not Available	936	Open in IMG/M
3300031823\|Ga0307478_10357661	Not Available	1204	Open in IMG/M
3300031962\|Ga0307479_10050044	All Organisms → cellular organisms → Bacteria	4015	Open in IMG/M
3300031962\|Ga0307479_10747892	Not Available	955	Open in IMG/M
3300032180\|Ga0307471_100025786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4424	Open in IMG/M
3300032180\|Ga0307471_102284024	Not Available	682	Open in IMG/M
3300032205\|Ga0307472_100984561	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	788	Open in IMG/M
3300032205\|Ga0307472_101069238	Not Available	761	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.11%
Loam	Environmental → Terrestrial → Soil → Loam	25.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	68.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	52.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	17.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.36%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_101136922	3300001867	Forest Soil	LEEQIDPVQPRPEHNLFSVMGQKLSGRATALIIAAVDADAEYYALHELGFVTVTVTTLVSESVYWDRD*
JGI12627J18819_101226552	3300001867	Forest Soil	MCLDPSVCPARTGRRSTLEEQIDPVQPSKQEHNLFCVMGQKLTGRATALIIAAVEADAEYYALHELGFVTVSVTTLVSESVYWNRD*
JGI12627J18819_103042341	3300001867	Forest Soil	MCPRPSVCPARTGRRSILEKQIDPVQPSKQEHNLFCVMGQKLTGRATVLIIAAVEADAEYYALHDLGFVTVAVTTLVSESVYWNRD*
JGIcombinedJ26739_1001178835	3300002245	Forest Soil	LVEQNDRIHEHTLFSVMGQKLTGHATALIIAAVEADAEYYALHDLGFVTVSATTLVSDSVYWNRD*
Ga0058903_15115782	3300004103	Forest Soil	LVEQNDPVRPRRCEHSLFSVMGQKLTGRATALVIAAVEADAEYYALHELGFVTVSVTTLISDSAYWSRD*
Ga0058899_120790241	3300004631	Forest Soil	QNDPVRPRRCEHSLFSVMGQKLTGRATALVIAAVEADAEYYALHELGFVTVLVTTLISDSVYWSRD*
Ga0070710_105081891	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LEEQTNPVQPSKQEYNLFCVMGQKLTGRATALIIAAVEADAEYYALHDLGFVTVSGATLVSESVYWNRD*
Ga0070733_100144942	3300005541	Surface Soil	LVEQKDPVRPRRCEHSLFSVMGQKLTGRATALVIAATEADAEYYALHELGFVTVSVTTLISDSVYWSRD*
Ga0070732_100163315	3300005542	Surface Soil	LRRENGKKKHLGRAIDPVRLSKQEHSLFCVMGQKPTGRATALIIAAVEPDAENYALHDLGFVTVAVTTLVSESLYWNRD*
Ga0070762_109435491	3300005602	Soil	LVEQNNPVRLRKQEHSLFAVIGQKPTGHATALIIAAIEADAEYYALYELDFVTVSATMLVSDSVYVELQVPG*
Ga0070762_110785232	3300005602	Soil	LVKQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALHELGFVALSDTTLVSDTVYLESDTRE*
Ga0070765_1018091262	3300006176	Soil	LVKQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALHELGFVALYDTTLVSDTVYLESDTRE*
Ga0150983_115573011	3300011120	Forest Soil	GRRSTLEEQIDPVRPSKQEHSLFCVMGQKLTGRATALIIAAVESDAKYYALHDLGFVTVAVTTLVSESVYWNRD*
Ga0150983_132918812	3300011120	Forest Soil	VEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALHDLGFVTVSVTTLVSESVYWNRD*
Ga0150983_144441961	3300011120	Forest Soil	PARTGRRSTLEEQIDPVQPSKQEHNLFCVMGQKLTGRATALIIAAVEADAEYYALHELGFVAVAVTTLVSESVYWSRD*
Ga0150983_158357672	3300011120	Forest Soil	AAQRAGRRSILVEQIDPVHPTRQACNLFSVMGQKITGRATALIIAAVEADAEYYALHELGFVTVLVTTLVSDSVYFNPD*
Ga0182024_103068014	3300014501	Permafrost	MKPTTREHTLFFVMGQTLSGQTIALMIAAIEADAEYYALHDLGFVTVSATTLVSDSVYVGLQVPD*
Ga0210407_101290942	3300020579	Soil	LVERNDPVRPRRSENSLFSVMGQRVTGRATALIIAAVEADAEYYALHELGFVTVSATTLVSDSVNWNRD
Ga0210407_101363972	3300020579	Soil	RLVRRNALVEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALHDLGFVTVSVTTLVSESVYWNRD
Ga0210407_106330071	3300020579	Soil	LPRENGKKKHLEEQIDPVRPSKQEHSLFCVMGQKLTGRATALIIAAVESDAEYYALHDLGFVTVAVTTLVSESVYWNRD
Ga0210403_100580216	3300020580	Soil	LVERNDPVRPRRSENSLFSVMGQRVTGRATALIIAAVEADAEYYALHELGFVTVSATTLVSDSVYWNRD
Ga0210403_101270043	3300020580	Soil	MFNRSLSLPRKNGKRSTLEEQIDRVQPSKQEHSLFCVMGQKLTGRATALIIAAVEADAEYFALHDLGFVTVAATTLVSESVYWNRD
Ga0210403_104396242	3300020580	Soil	LVEQNGPVRPSKEEHSLFSVMGQKLRGRATALIIAAVEADAEYYALHELGFVTVSVTTLVSESVYLNRD
Ga0210403_111783271	3300020580	Soil	LFPRPLSLPRENGKKKHLEEQIDPVRPSKQEHSLFCVMGQKLTGRATALIIAAVESDAEYYALHDLGFVTVAVTTLVSESVYWNRD
Ga0210403_112010342	3300020580	Soil	LVEQIDPVHPTRQECNLFSVMGQKITGRATALIIAAVEADAEYYALHELGFVTVSETMLVSDSVYLHRD
Ga0210403_114649721	3300020580	Soil	LVKQNDPMQPSKQEHNLFSVIGQKLTGHATALIIAASEADAEYYALHELGFVTLSATSLVSESVHIG
Ga0210399_100121533	3300020581	Soil	LEEQIDPVQPSKQEHNLFCVMGQKLTGRATALIIAAVEADAEYYALHELGFVAVAVTTLVSESVYWNRD
Ga0210399_100421263	3300020581	Soil	LVERNDPVRPRRSENSLFSVMGQKVTGRATALIIAAVEADAEYYALHELGFVTVSATTLVSDSVYWNRD
Ga0210399_104559992	3300020581	Soil	MLRRPSVRLQTGNGEEGNTLVEQNDRIHEHTLFSVVGQKLTGQATALIIAAVEADAEYYALHDLGFVTVSATTLVSDSVHWNRD
Ga0210399_107948502	3300020581	Soil	VVKQSDPMQPRKQEHNLFSVIGQKLTGHAIALIIAAAEADAEDYALHELGFVTVSATTLVSDSVYFDRD
Ga0210399_109092901	3300020581	Soil	QNDPMQPINQEHNLFSVIGQKLTGHAIALIIAASEADAQYYALHELGFITLSATSLVSDSVHIG
Ga0210399_111722491	3300020581	Soil	MVEQNGLVQPDREEHSLFSVMGQKLTGRATALIIAASEADAEYYALHELGFVAVSVASLVSDSVHIG
Ga0210399_114627601	3300020581	Soil	NTLVEQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALHELGFVALSDTTLVSDTVYLESDIRE
Ga0210399_115134531	3300020581	Soil	LVEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALHDLGFVTVAVTTLVSKSVYWNRD
Ga0210395_100563847	3300020582	Soil	RTTLVQQNDPMQPINQEHNLFSVIGQKLTGHAIALIIAASEADAQYYALHELGFITLSATSLVSDSVHIG
Ga0210401_102202953	3300020583	Soil	LVEQNDPVRPRRCEHSLFSVMGQKRTGRATALIIAAAEADAEYYALHDLGFVTISATTLVSDSVYWNWDLAP
Ga0210401_107128311	3300020583	Soil	MTARRRALVEQNNPVRLRKQEHSLFAVIGQKPTGHATALIIAAIEADAEYYALHELDFVTVSATMLVSDSVYVELQVPG
Ga0210401_113061162	3300020583	Soil	LEEQYDPVQPSKHEYSFFSVMGQKLMGRATALIIAAVEADAEYYALHELGFVAVSATTLVSDSVYVDRNLTT
Ga0210406_100179245	3300021168	Soil	VVEQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALHELGFVALSDTTLVSDTVYLDSDIRE
Ga0210406_100232702	3300021168	Soil	LEEQIDPVQPSKQEHNLFCVMGQKLTGRATALIIAGVEADAEYYALHELGFVAVAVTTLVSESVYWNRD
Ga0210406_100448674	3300021168	Soil	LVEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALNELGFVTVALTTLVSKSVYWNRD
Ga0210406_100506217	3300021168	Soil	RPRRSENSLFSVMGQKVTGRATALIIAAVEADAEYYALHELGFVTVSATTLVSDSVYWNR
Ga0210406_110310111	3300021168	Soil	LVEQIDPVHPTRQECNLFSVMGQKITGRATALIIAAVEADAEYYALHELGFVTVSETMLVSDSV
Ga0210405_100144484	3300021171	Soil	MQPRKQEHNLFSVIGQKLTGHAIALIIAAAEADAEDYALHELGFVTVSATTLVSDSVYFDRD
Ga0210405_100439162	3300021171	Soil	LEEQIDPVQPSKQEHNLFCVMGQKRTGRATALIIAAVEADAEYYALHDLGFVAVAVTTLVSESVYWNRD
Ga0210405_103560781	3300021171	Soil	LEEQYDPVQPSKHEYSFFSVMGRKLMGRATALIIAAVEADAEYYALHELGFVAVSATTLVSDSVYVDRNLTT
Ga0210408_113008552	3300021178	Soil	LVKQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALHELGFVALSDTTLVSDTV
Ga0210396_100035998	3300021180	Soil	LVEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALHDLGFVTVAVTTLVSESVYWNGD
Ga0210396_107737152	3300021180	Soil	LVEQNDPVRPRRSENSLFSVMGQKATGRATALIIAAVEADAEYYALHDLGFVTVSVTTLVSDSVYWNRD
Ga0210388_102606681	3300021181	Soil	LVEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIPVVEADAEYYALHELGFVTVSATTLISDSVYWSRD
Ga0210388_108451953	3300021181	Soil	SKEEHSLFSVMGQKLRGRATALIIAAVEADAEYYALHELGFVTVSVTTLVSESVYLNRD
Ga0210388_109021672	3300021181	Soil	TVRRNTLVKQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALHELGFVALSDTTLVSDTVYLDSDIRE
Ga0210393_100670731	3300021401	Soil	LVERNDPVRPRRSENSLFSVMGQRVTGRATALIIAAVEADAEYYALHELGFVTVSATTLVSDSVNWN
Ga0210393_102789452	3300021401	Soil	RCEHSLFSVMGQKRTGRATALIIAAAEADAEYYALHDLGFVTISATTLVSDSVYWNWDLA
Ga0210393_102884442	3300021401	Soil	LVEQNDPVRPRRCEHSLFSVMGQKLTGRATALVIAAVEADAEYYALHELGFVTVLVTTLISDSVYWSRD
Ga0210397_106200761	3300021403	Soil	QNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALHELGFVALSDTTLVSDTVYLDSDIRE
Ga0210387_104342883	3300021405	Soil	ATDRALKVCLSPSVCLAGTVKRRAVVKQSDPMQPSKQEHNLFSVMGQKLTGHAVALIIAASEADAEYYALHELGFISVSATSLVSDSVHIG
Ga0210387_109008581	3300021405	Soil	LVLQNDRIHEHTLFSVMGRKLTGHATALIIADLEADAEYYALHELGFVALSDTTLVSDTVYLESDIRE
Ga0210387_111836922	3300021405	Soil	VVKQSDPRQPRKQEHNLFSVIGQKLTGHAIALIIAAAEADAEDYALHELGFVTVSATTLVSDSVYFDRD
Ga0210383_103728023	3300021407	Soil	LVKQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALNELGFVALSDTTLVSDTVYLESDTRE
Ga0210383_110717931	3300021407	Soil	LVEQNDPVRPRRSENSLFSVMGQKATGRATALIIAAVEADAEYYALHDLGFVTVSATTLVSDSVYWNRE
Ga0210383_117924621	3300021407	Soil	LVEQNGPVRPSKEELSLFSVMGQKLRGRATALIIAAVEADAEYYALHELGSVTVSVTTLVSESVYLNRD
Ga0210394_100510484	3300021420	Soil	LVEQNDPVRPRRCEHSLFSVVGQKLTGRATALIIAAAEADAEYYALNELGFVTVALTTLVSKSVYWNRD
Ga0210394_105000072	3300021420	Soil	MGTVRRNTLVKQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALNELGFVALSDTTLVSDTVYLESDTRE
Ga0210394_112721291	3300021420	Soil	RRSKNNLFSVMGQKVTGRATALIIAAVEADAEYYALHELGFVTVSATTLVSDSVYWNRD
Ga0210394_116396861	3300021420	Soil	LEEQYDPVQPSKHEYSFFSVMGRKLMGRATALIIAAVEADAEYYALHELGFVAVSATTL
Ga0210384_106060831	3300021432	Soil	VRRDPVQPFKQEHNLFSVMGQKPTGHATALIIAAIAADAERYALHELGFVAVSETVLVSHSIYIGSARE
Ga0210384_118852992	3300021432	Soil	VRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALHDLGFVTVAVTTLVSESVYWNGD
Ga0210391_104436541	3300021433	Soil	PARLVRRNALVEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALNELGFVTVALTTLVSKSVYWNRD
Ga0210391_112006481	3300021433	Soil	LVEQNDPVRPRRCEHSLFSVMGQKRTGRATALIIAAAEADAEYYALHDLGFVTISATTL
Ga0210390_102298592	3300021474	Soil	VVEQNDRIHEHTLFSVMGQKLTGHATALIIADLEADAEYYALHELGFVALSDTTLVSDTVHLESDIRE
Ga0210402_102689832	3300021478	Soil	YETVRRRALVEQNGPVRPSKEEHSLFSVMGQKLRGRATALIIAAVEADAEYYALHELGFVTVSVTTLVSESVYLNRD
Ga0210410_113026091	3300021479	Soil	TSRDCRRNALVEQNDPVRPRRSENSLFSVMGQKATGRATALIIAAVEADAEYYALHDLGFVTVSVTTLVSDSVYWNRD
Ga0242669_10157542	3300022528	Soil	PLTPRFAPARLVRRNALVEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALNELGFVTVALTTLVSKSVYWNRD
Ga0242662_101427371	3300022533	Soil	VQPSKQEHNLFCVMGQKLTGRATALIIAAVEADAEYFALHDLGFVTVAATTLVSESVYWNRD
Ga0242654_100583661	3300022726	Soil	ALVEQNDPVRPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALNELGFVTVAVTTLVSKSVYWNRD
Ga0207692_105927391	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LEEQTNPVQPSKQEYNLFCVMGQKLTGRATALIIAAVEADAEYYALHDLGFVTVAATTLVSESVYWNRD
Ga0209648_101766412	3300026551	Grasslands Soil	VQPSKQEHSLFSVMGQKLTGHATALIIAASEADAEYYALHELGFVTVSATTLVSDSVHV
Ga0209325_10331451	3300027050	Forest Soil	RTGRRSTLEEQIDPVQPSKQEHNLFCVMGQKLTGRATALIIAAVEADAEYYALHDLGFVTVSGVTLVSESVYWNRD
Ga0209729_10031701	3300027061	Forest Soil	MCPRPSVCAARTGRRSILEKQIDPVQPSKQEHNLFCVMGQKLTGRATVLIIAAVEADAEYYALHDLGFVTVAVTTLVSESVYWNRD
Ga0208604_10197721	3300027090	Forest Soil	VVDRKDLMPSSKQEHNLFSVMGQKVTGRATALIIAAVEADAEYYALHELGFVTVSATTLVSDSVYWNRD
Ga0208603_10446101	3300027109	Forest Soil	LVEQNDRIHEHTLFSVVGQKLTGQATALIIAAVEADAEYYALHDLGFVTVSATTLVSDSVHWNRD
Ga0209731_10654511	3300027326	Forest Soil	MCPRPSVCPARTGRRSILEKQIDPVQPSKQEHNLFCVMGQKLTGRATVLIIAAVEADAEYYALHDLGFVTVAVTTLVSESVYWNRD
Ga0209418_10027992	3300027371	Forest Soil	MCLDPSVCPARTGRRSTLEEQIDPVQPSKQEHNLFCVMGQKLTGRATALIIAAVEADAEYYALHELGFVTVSVTTLVSESVYWNRD
Ga0209418_10614111	3300027371	Forest Soil	LEEQIDPVQPRPEHNLFSVMGQKLSGRATALIIAAVDADAEYYALHELGFVTVTVTTLVSESVYWDRD
Ga0209329_10370721	3300027605	Forest Soil	LVEQNDPAQPSRQEHSLFSVMGAKLTGHATALIIAAVEADAEYYALHELGFVTVSATMLVSDSVYVESSDTRE
Ga0209625_10437803	3300027635	Forest Soil	VEQNDPAQPSRQEHSLFSVMGQKLTGHATALIIAAIEADAEYYALHELGFVTVSATMLVSDSIYVESSDTRE
Ga0209580_102260452	3300027842	Surface Soil	LRRENGKKKHLGRAIDPVRLSKQEHSLFCVMGQKLTGRATALIIAAVEPDAENYALHDLGFVTVAVTTLVSESLYWNRD
Ga0209693_100246145	3300027855	Soil	LVEQNNPVRLRKQEHSLFAVIGQKPTGHATALIIAAIEADAEYYALYELDFVTVSATMLVSDSVYVELQVPG
Ga0209167_104480141	3300027867	Surface Soil	LVEQKDPVRPRRCEHSLFSVMGQKLTGRATALVIAATEADAEYYALHELGFVTVSVTTLISDSVYWSRD
Ga0209579_102053023	3300027869	Surface Soil	RPRRCEHSLFSVMGQKLTGRATALIIAAAEADAEYYALHDLGFVTVAVTTLVSESVYWNQ
Ga0209275_100478222	3300027884	Soil	LVEQNDPVRPRRCEHSLFSVMGQKRTGRATALIIAAAEADAEYYALHDLGFVTISATTLVSDSVYWNWDLTP
Ga0209006_100206653	3300027908	Forest Soil	LVEQNDRIHEHTLFSVMGQKLTGHATALIIAAVEADAEYYALHDLGFVTVSATTLVSDSVYWNRD
Ga0308309_100175592	3300028906	Soil	LVEQNNPVRLRKQEHSLFAVIGQKPTGRATALIIAAIEADAEYYALYELDFVTVSATMLVSDSVYVELQVPG
Ga0170834_1016793563	3300031057	Forest Soil	LVVQRNSTQPSKQEHSLFSVIGQKSAGHATALIIAAIEADAEYYALHELGFVTVSATTLVSDS
Ga0170824_1242274881	3300031231	Forest Soil	RTRRSHCSLDPSVWPARTGRRSTLEEQIDPVQPSKQEHNLFCVMGQKLTGRATALIIAAVEADAEYYALHELGFVAVAVTTLVSESVYWNRD
Ga0307476_100084858	3300031715	Hardwood Forest Soil	VEPSNQEHSLFSVMGQKSTGHATALIIAAIAADAEHYALHELGFVAVSETVLVSDSVYIRSARE
Ga0307474_102636021	3300031718	Hardwood Forest Soil	VLQNDRIHEHTLFSVMGQKLTGHATALIIADLVADAEYYALHELGFVALSDTTLVSDTVYLESDIRE
Ga0307477_106190971	3300031753	Hardwood Forest Soil	LVEQNDPVRPRRCEHSLFSVKGQKLTGRATALVIAAVEADAEYYALHELGFVTVSVTTLISD
Ga0307475_101243021	3300031754	Hardwood Forest Soil	QCALGPRFTPGDCRRNALVEQNDPVRPRRSENSLFSVMGQKATGRATALIIAAVEADAEYYALHDLGFVTVSATTLVSDSVYWNRD
Ga0307475_104671002	3300031754	Hardwood Forest Soil	VEPSNQEHSLFSVMGHKSTGHATALIIAAIAADAENYALHELGFVAVSETVLVSDSVYIRSARE
Ga0307475_109013442	3300031754	Hardwood Forest Soil	LEEQIDPVQPSKQEHNLFCVMGQKPTGRATALIIAAVEAGAEYYALHELGFVTVTVTTLVSESVYWNRD
Ga0307475_115169542	3300031754	Hardwood Forest Soil	TLEEQIDPVQPSKQEHYLFCVMGQKLTGRATALIIAAVEADAEYYALHELGFVAVAVTTLVSESVYWSRD
Ga0307473_103625932	3300031820	Hardwood Forest Soil	LEEQIDRVQPSKQEHSLFCVMGQKLTGRATALIIAAVEADAEYYALHDLGFVTVSETMLMSDTVYFGSD
Ga0307478_101328322	3300031823	Hardwood Forest Soil	LLEQDGLRHNKQERSLFSVVGQTLTGNTTALIIAAIEADAEYYAVHELGFVSVSETMLVSDSVYVA
Ga0307478_103576611	3300031823	Hardwood Forest Soil	LVEQNDRIHEHTLFSVVGQKLTGHATALIIAAVEADAEYYALHDLGFVTVSATTLVSDSVYWNRD
Ga0307479_100500447	3300031962	Hardwood Forest Soil	VPLTPRFAPARLVRRNALVEQNDPVRPRRCEHSLFSVKGQKLTGRATALVIAAVEADAEYYALHELGFVTVSVTTLISNSVYWSRD
Ga0307479_107478922	3300031962	Hardwood Forest Soil	LEEQIDPVQPSKQEHNLFCVMGRKLTGRATALIIAAVEADAEYYALHDLGFVTVSETALVRDSVYWDRD
Ga0307471_1000257865	3300032180	Hardwood Forest Soil	LEEQIDPVQPRPEHNLFSVMGQKLTGRATALIIAAVDADAEYYALHELGFVTVSVTTLVSESVYWNRD
Ga0307471_1022840241	3300032180	Hardwood Forest Soil	LLPHNNPAQPSKKEHSLFSVMGQNLTGHATALIIAAIESDAEYYALHELGFVTVSASALVSDSVYIESADTWE
Ga0307472_1009845611	3300032205	Hardwood Forest Soil	LEEQIDPVQPSKQEHSLFCVMGQKLTGRATALIIAAVEAEAEYYALHQLGFVTVSVTTLVSESVYWIRD
Ga0307472_1010692381	3300032205	Hardwood Forest Soil	MCLYPSVCPARTGRRSTLEEQIDPVQPSKQEHNLFCVMGQKLSGRATALIIAAVEADAEYYALHDLGFVTVSVTTLVSESVYWNRD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084472

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences