Metagenome / Metatranscriptome Family F084535

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084535
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	41 residues
Representative Sequence	LMRNCFFGGAMHAVFLLQKGHGDQLASDIAGFIMEEPQS
Number of Associated Samples	69
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	18.75 %
% of genes near scaffold ends (potentially truncated)	71.43 %
% of genes from short scaffolds (< 2000 bps)	92.86 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (85.714 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.679 % of family members)
Environment Ontology (ENVO)	Unclassified (50.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.714 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 44.78% β-sheet: 0.00% Coil/Unstructured: 55.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF04404	ERF	20.54
PF09588	YqaJ	2.68
PF13560	HTH_31	0.89
PF01381	HTH_3	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.71 %
All Organisms	root	All Organisms	14.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.71 %
cellular organisms	root	All Organisms → cellular organisms	14.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.71 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.71 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.14 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.57 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.71 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.89 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.89 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004082\|Ga0062384_100894796	Not Available	627	Open in IMG/M
3300005434\|Ga0070709_10475042	Not Available	946	Open in IMG/M
3300005435\|Ga0070714_102491856	Not Available	502	Open in IMG/M
3300005764\|Ga0066903_100312029	All Organisms → cellular organisms → Bacteria → Proteobacteria	2501	Open in IMG/M
3300005764\|Ga0066903_102226440	Not Available	1057	Open in IMG/M
3300005764\|Ga0066903_103133175	Not Available	895	Open in IMG/M
3300005764\|Ga0066903_104219691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300006175\|Ga0070712_100886550	Not Available	769	Open in IMG/M
3300010046\|Ga0126384_10047764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2936	Open in IMG/M
3300010046\|Ga0126384_10250618	Not Available	1431	Open in IMG/M
3300010048\|Ga0126373_10044723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3911	Open in IMG/M
3300010048\|Ga0126373_10711069	Not Available	1063	Open in IMG/M
3300010048\|Ga0126373_12399388	Not Available	587	Open in IMG/M
3300010048\|Ga0126373_12626605	Not Available	562	Open in IMG/M
3300010048\|Ga0126373_13296587	Not Available	502	Open in IMG/M
3300010358\|Ga0126370_10792968	Not Available	844	Open in IMG/M
3300010359\|Ga0126376_10542680	Not Available	1086	Open in IMG/M
3300010360\|Ga0126372_10197440	Not Available	1671	Open in IMG/M
3300010360\|Ga0126372_10238882	Not Available	1549	Open in IMG/M
3300010360\|Ga0126372_11809321	Not Available	654	Open in IMG/M
3300010361\|Ga0126378_10341630	Not Available	1606	Open in IMG/M
3300010361\|Ga0126378_10713871	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1114	Open in IMG/M
3300010361\|Ga0126378_10948792	Not Available	965	Open in IMG/M
3300010361\|Ga0126378_12090875	Not Available	646	Open in IMG/M
3300010361\|Ga0126378_13153649	Not Available	525	Open in IMG/M
3300010361\|Ga0126378_13203721	Not Available	520	Open in IMG/M
3300010366\|Ga0126379_11700571	Not Available	736	Open in IMG/M
3300010366\|Ga0126379_13845724	Not Available	503	Open in IMG/M
3300010376\|Ga0126381_100486779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1737	Open in IMG/M
3300010376\|Ga0126381_101462300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	988	Open in IMG/M
3300010398\|Ga0126383_11447823	Not Available	777	Open in IMG/M
3300011270\|Ga0137391_10822318	Not Available	764	Open in IMG/M
3300012351\|Ga0137386_10848389	Not Available	656	Open in IMG/M
3300012917\|Ga0137395_10439197	Not Available	937	Open in IMG/M
3300012923\|Ga0137359_10899493	Not Available	763	Open in IMG/M
3300012929\|Ga0137404_11949473	Not Available	547	Open in IMG/M
3300012961\|Ga0164302_11075530	Not Available	633	Open in IMG/M
3300012971\|Ga0126369_10706742	Not Available	1085	Open in IMG/M
3300015371\|Ga0132258_12160102	Not Available	1398	Open in IMG/M
3300015373\|Ga0132257_100909473	Not Available	1103	Open in IMG/M
3300016270\|Ga0182036_10937351	Not Available	711	Open in IMG/M
3300016270\|Ga0182036_11016324	Not Available	684	Open in IMG/M
3300016341\|Ga0182035_10493594	Not Available	1044	Open in IMG/M
3300016341\|Ga0182035_11303697	Not Available	650	Open in IMG/M
3300016387\|Ga0182040_10934714	Not Available	720	Open in IMG/M
3300016422\|Ga0182039_10301548	Not Available	1327	Open in IMG/M
3300016422\|Ga0182039_10350812	Not Available	1239	Open in IMG/M
3300016422\|Ga0182039_10472479	Not Available	1078	Open in IMG/M
3300016422\|Ga0182039_11129088	Not Available	706	Open in IMG/M
3300017943\|Ga0187819_10279839	Not Available	972	Open in IMG/M
3300017955\|Ga0187817_10959386	Not Available	547	Open in IMG/M
3300020581\|Ga0210399_11574517	Not Available	507	Open in IMG/M
3300021181\|Ga0210388_10243798	All Organisms → cellular organisms → Bacteria → Proteobacteria	1577	Open in IMG/M
3300021405\|Ga0210387_10736656	Not Available	873	Open in IMG/M
3300021560\|Ga0126371_10945474	Not Available	1005	Open in IMG/M
3300021560\|Ga0126371_12140299	Not Available	674	Open in IMG/M
3300021560\|Ga0126371_12584583	Not Available	615	Open in IMG/M
3300025915\|Ga0207693_10607463	Not Available	851	Open in IMG/M
3300025928\|Ga0207700_10918161	Not Available	784	Open in IMG/M
3300025929\|Ga0207664_10889082	Not Available	800	Open in IMG/M
3300029636\|Ga0222749_10633792	Not Available	585	Open in IMG/M
3300031231\|Ga0170824_118728769	Not Available	946	Open in IMG/M
3300031474\|Ga0170818_102438218	Not Available	591	Open in IMG/M
3300031545\|Ga0318541_10284632	Not Available	921	Open in IMG/M
3300031573\|Ga0310915_10453433	Not Available	911	Open in IMG/M
3300031573\|Ga0310915_10730974	Not Available	698	Open in IMG/M
3300031573\|Ga0310915_11109589	Not Available	549	Open in IMG/M
3300031681\|Ga0318572_10817858	Not Available	554	Open in IMG/M
3300031724\|Ga0318500_10293571	Not Available	795	Open in IMG/M
3300031736\|Ga0318501_10380543	Not Available	761	Open in IMG/M
3300031744\|Ga0306918_10357175	Not Available	1134	Open in IMG/M
3300031744\|Ga0306918_10623638	Not Available	845	Open in IMG/M
3300031765\|Ga0318554_10027390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3032	Open in IMG/M
3300031768\|Ga0318509_10227474	Not Available	1040	Open in IMG/M
3300031770\|Ga0318521_10960484	Not Available	523	Open in IMG/M
3300031771\|Ga0318546_10971227	Not Available	598	Open in IMG/M
3300031797\|Ga0318550_10440737	Not Available	630	Open in IMG/M
3300031805\|Ga0318497_10304519	Not Available	888	Open in IMG/M
3300031833\|Ga0310917_10493124	Not Available	833	Open in IMG/M
3300031879\|Ga0306919_10134304	Not Available	1786	Open in IMG/M
3300031879\|Ga0306919_10706491	Not Available	776	Open in IMG/M
3300031879\|Ga0306919_10812815	Not Available	718	Open in IMG/M
3300031879\|Ga0306919_11046388	Not Available	623	Open in IMG/M
3300031879\|Ga0306919_11262226	Not Available	560	Open in IMG/M
3300031890\|Ga0306925_11469384	Not Available	669	Open in IMG/M
3300031890\|Ga0306925_12190593	Not Available	514	Open in IMG/M
3300031896\|Ga0318551_10133028	Not Available	1348	Open in IMG/M
3300031897\|Ga0318520_10951099	Not Available	542	Open in IMG/M
3300031910\|Ga0306923_10214618	Not Available	2201	Open in IMG/M
3300031910\|Ga0306923_10769328	Not Available	1066	Open in IMG/M
3300031910\|Ga0306923_11988423	Not Available	590	Open in IMG/M
3300031910\|Ga0306923_12053949	Not Available	578	Open in IMG/M
3300031912\|Ga0306921_10099997	All Organisms → cellular organisms → Bacteria → Proteobacteria	3360	Open in IMG/M
3300031912\|Ga0306921_10832496	Not Available	1052	Open in IMG/M
3300031912\|Ga0306921_11518433	Not Available	731	Open in IMG/M
3300031912\|Ga0306921_11680405	Not Available	687	Open in IMG/M
3300031941\|Ga0310912_10911184	Not Available	676	Open in IMG/M
3300031942\|Ga0310916_10392766	Not Available	1180	Open in IMG/M
3300031942\|Ga0310916_10679551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	872	Open in IMG/M
3300031946\|Ga0310910_10678002	Not Available	815	Open in IMG/M
3300031947\|Ga0310909_10042474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3446	Open in IMG/M
3300031947\|Ga0310909_10875864	Not Available	738	Open in IMG/M
3300031954\|Ga0306926_10449371	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300032001\|Ga0306922_10139226	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300032001\|Ga0306922_10358701	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300032001\|Ga0306922_10513068	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300032035\|Ga0310911_10164728	Not Available	1252	Open in IMG/M
3300032205\|Ga0307472_102412842	Not Available	534	Open in IMG/M
3300032261\|Ga0306920_104335891	Not Available	509	Open in IMG/M
3300033289\|Ga0310914_10441800	Not Available	1177	Open in IMG/M
3300033290\|Ga0318519_10147083	Not Available	1314	Open in IMG/M
3300033290\|Ga0318519_10638094	Not Available	648	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.54%
Aquatic	Environmental → Aquatic	2.68%
Plants	Host-Associated → Plants	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.54%
Freshwater	Environmental → Aquatic → Freshwater	2.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.61%
Loam	Environmental → Terrestrial → Soil → Loam	8.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062384_1008947961	3300004082	Bog Forest Soil	SEVILPLMRNCFFGGAMHAVFLLQKGHGAELASDITDFFSDQPQS*
Ga0070709_104750421	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LMRNCFFGGAMHAVLLLQKGHGDELASDITDFFTDQPQS*
Ga0070714_1024918561	3300005435	Agricultural Soil	GCTLDRCVSESPLGEVIFPLVRDAAVLLLQKGHGDQVTSDIAGFIMEEPHS*
Ga0066903_1003120295	3300005764	Tropical Forest Soil	MRICFFGGAMQAVFLLQKGHGDRLASDIAGFIMDEPLS*
Ga0066903_1022264401	3300005764	Tropical Forest Soil	ILPLMRNCFFGGAMHAVLLLQNGHGDRLAADIAGFIMKGQS*
Ga0066903_1031331751	3300005764	Tropical Forest Soil	ILPLMRNCFYGGAMHAVFLLQKGHGDELAAEIAGFIEEEPQS*
Ga0066903_1042196912	3300005764	Tropical Forest Soil	MMRTCFFWGAMHAVFLLDNGHGDQLAADIAGFLRDGPRP*
Ga0070712_1008865503	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RNCFFGGAMHAVFLLQKGHGDQVASDIAGFIMEEPQS*
Ga0126384_100477645	3300010046	Tropical Forest Soil	LPLVRNCFFGGAMHAVLLLQNGHGDRLAADIAGFLVKGQS*
Ga0126384_102506183	3300010046	Tropical Forest Soil	MRSCFFGGAMYAIHLLQSGHGDQLAFDIAGFITEQPQS*
Ga0126373_100447233	3300010048	Tropical Forest Soil	MRNCFFGGAMRAVFLLQKGHGDQLVADIAGFINEEPRW*
Ga0126373_107110691	3300010048	Tropical Forest Soil	CFFGGAMHAVFLLQKGRGEQLASDIAGFIHEEPQS*
Ga0126373_123993882	3300010048	Tropical Forest Soil	FFGGAIYAVLLLQKGHGHQLACDIAGFITEEPPS*
Ga0126373_126266051	3300010048	Tropical Forest Soil	CFFGGAIYAVLLLQKGHGDRVAADIAGFITKERQS*
Ga0126373_132965872	3300010048	Tropical Forest Soil	MVRSCFFGGAIYAVLLLQKGHGDRLAADIAGFIAEKPAS*
Ga0126370_107929681	3300010358	Tropical Forest Soil	LLPLLRNCFFGGAVYALLLLQNSHGDQVAADIAGFITEEPHS*
Ga0126376_105426802	3300010359	Tropical Forest Soil	RNCFFGGAMHAVFLLQKGHGEQLASDIAGFVDEEPQS*
Ga0126372_101974401	3300010360	Tropical Forest Soil	MLRSCFFGGAIYAVLLLQKGHGDRVAADIAGFIAEKLES*
Ga0126372_102388821	3300010360	Tropical Forest Soil	MRSCFFGGAMYAIHLLQTGHGDQLAFDIAGFITEQPQS*
Ga0126372_118093213	3300010360	Tropical Forest Soil	MHNCFFGAAVHAVLLLQKGHGDQLASDIARFLMEERQS*
Ga0126378_103416302	3300010361	Tropical Forest Soil	MMRSCFFGGAIYAALLLQRGHGDRLAADIAGFMAEKPES*
Ga0126378_107138712	3300010361	Tropical Forest Soil	MRSCFFGGAIYAVLLLQKGHGDRVAADIAGFIAEKPES*
Ga0126378_109487921	3300010361	Tropical Forest Soil	PLNEVILPLMRNCFFGGAMHAVFLLQRGHGEQLASDIAGLIDEEPQS*
Ga0126378_120908751	3300010361	Tropical Forest Soil	PLNQIILPLMRDCFFAGAIHAVRLLQKGHGDQVVCDIAGFIMEEPQS*
Ga0126378_131536491	3300010361	Tropical Forest Soil	ILPLMRICFFGGAMHAVLLLQNGHGDRLAADIAGFIMKGQS*
Ga0126378_132037212	3300010361	Tropical Forest Soil	MMRSCFFGGAIYAVLLLQKGHGDRVAADIAGFIAEKPEL*
Ga0126379_117005712	3300010366	Tropical Forest Soil	MRCCFFGGALHAVFLLHKGHGDQLASDIASFIMDEPRS*
Ga0126379_138457243	3300010366	Tropical Forest Soil	LSEVIFPLMRNCFFGGAMHAVFLLQNGHGDQLASDIAGFIMKEPQS*
Ga0126381_1004867791	3300010376	Tropical Forest Soil	LNEVILPLMRNCFFGGAMHAVFLLQKGHGEQLASDIAGFIKEEPQS*
Ga0126381_1014623001	3300010376	Tropical Forest Soil	LCEVILPLMRNCFFGGAMYAVHLLQNGHGDQLVSDIAGFITEQPQS*
Ga0126383_114478231	3300010398	Tropical Forest Soil	NCFFAGAIHAVRLLQKGHGDQVVCDIAGFIMEEPQS*
Ga0137391_108223181	3300011270	Vadose Zone Soil	MRNCFFGGAIHAVLLLQKGRGDQLTSDIAGFIMEEPQS*
Ga0137386_108483892	3300012351	Vadose Zone Soil	MRNCFFGGAIHAVLLLEKGRGDQLTSDIVGFIMEEPQA*
Ga0137395_104391971	3300012917	Vadose Zone Soil	NCFFGGAIHAVLLLQKGRGDQLTSDIAGFMMEEPQS*
Ga0137359_108994931	3300012923	Vadose Zone Soil	MRNCFFGGAMHAVLLLQKGHGDELASDITDFFTDQPQS*
Ga0137404_119494731	3300012929	Vadose Zone Soil	MLNCFFGGAMHAVLLLQKGHGDQLASDIAGFIMEDPQS*
Ga0164302_110755302	3300012961	Soil	MRNCFFGGAMHAVLLLQKGHGDELASDITDFFTHQPQS*
Ga0126369_107067421	3300012971	Tropical Forest Soil	MMRSCFFGGAIYAVLLLQKGHGARVAADIAGFIAEKPES*
Ga0132258_121601023	3300015371	Arabidopsis Rhizosphere	CFFAGAVHAVLLLRKGHGDELASDITGFIAEQPQS*
Ga0132257_1009094732	3300015373	Arabidopsis Rhizosphere	MRNCFFAGAVHAVLLLRKGHGDELASDITGFIAEQPQS*
Ga0182036_109373511	3300016270	Soil	MCNCFFGGAMHAILLLQNGHSDQLASDIAGFIMKVPQE
Ga0182036_110163242	3300016270	Soil	CFFGGAMYAIHLLQSGLGDQLAFDIAGFITEQPQS
Ga0182035_104935942	3300016341	Soil	CVSDGPMNDVILPLMRNCFFDGAMHGVFLLQKGHGEQLASDISRFVTEEPQS
Ga0182035_113036971	3300016341	Soil	SEIILPLMRNCFFGGAVHAVLLLQKGHGDQRASDIAGFIKEPQS
Ga0182040_109347141	3300016387	Soil	LPLMRSCFFGGATHAVFLLQKGYGNQLASDISGFIFEQPQS
Ga0182039_103015481	3300016422	Soil	ILPLMRSCFFGGAMHAVLLLQNGHGDRLATDIAGFVSKEQS
Ga0182039_103508123	3300016422	Soil	MNEVILPLMRNCFFGGALHAVLLLQKGHAEQLASDIAEFI
Ga0182039_104724791	3300016422	Soil	MNEVILPLMRNCFFGGALHAVLLLQKGHAEQLASDIAEFIREEPQS
Ga0182039_111290881	3300016422	Soil	MNEVILPLMRNCFFGGALHAVLLLQKGHAEQLASDIAEFIQDEPQS
Ga0187819_102798392	3300017943	Freshwater Sediment	MRNCFFGGAMYAVHLLQNGHGDQLASDIAGFVLEEPQS
Ga0187817_109593861	3300017955	Freshwater Sediment	PLMHNCFFGGAMHAVLLLQNGHGDQLASDIAGFIMKVPQS
Ga0210399_115745171	3300020581	Soil	PLMRNCFFGGAMHAVLLLQKGHGDELASDITDFFTEQPQS
Ga0210388_102437983	3300021181	Soil	MSEVILPLMRNCFFGGAMHAVLLLQKGHGDELASDITDFFTEQPQS
Ga0210387_107366562	3300021405	Soil	MRDCFFGGAIYAVHLLKTGHGDQLASDIASFIMKEA
Ga0126371_109454742	3300021560	Tropical Forest Soil	MRNCFFGGAMRAVFLLQKGHGDQLVADIAGFINEEPRW
Ga0126371_121402991	3300021560	Tropical Forest Soil	LPMMRSCFFGGAIYAVLLLQKGHDDRVAADIAGFIAEEPRS
Ga0126371_125845832	3300021560	Tropical Forest Soil	DGPLNEIILPLMRNCFFGGAMHAVFLLQKGRGEQLASDIAGFIHEEPQS
Ga0207693_106074631	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LDRCVSERPLGEVIFPLVRDAAVLLLQKGHGDQVTSDIAGFIMEEPHS
Ga0207700_109181611	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	IVPLTRNCFFGGAMHAVFLLQKGHGDQLASDIAGFIMEEPQS
Ga0207664_108890822	3300025929	Agricultural Soil	MRNCFFGGAMHAVFLLQKGHGDQVASDIAGFIMEEPQS
Ga0222749_106337921	3300029636	Soil	LMRNCFFGGAMHAVFLLQKGHGDQLASDIAGFIMEEPQS
Ga0170824_1187287691	3300031231	Forest Soil	MRNCFFGGAMHAVLLLRNSHGDRLAANIAGFIIKRRQS
Ga0170818_1024382181	3300031474	Forest Soil	LMRNCFFGGAMYAVHLLQNGHSDQLVSDIAGFLMKEPQS
Ga0318541_102846322	3300031545	Soil	SKEILPLMRNCFFGGAIHAVRLLQQGHGDQLVFDIAGFIVEEPHS
Ga0310915_104534332	3300031573	Soil	MRNCFFGGAIHAVRLLQMGHGDQLVADIAGFIMKERGRD
Ga0310915_107309741	3300031573	Soil	SEVILPLMRNYFFGGAIHAVLLLQKGHGDQLTSEIAGFIMEEPQS
Ga0310915_111095892	3300031573	Soil	ILPLMRNCFFGGAMHAVFLLQKGHGDQLASDIAGFIREEPQS
Ga0318572_108178581	3300031681	Soil	PLLRNCFFSGAVYAVLLLQKGHGEQVAADIAGFITEEPES
Ga0318500_102935712	3300031724	Soil	TPLSEVIFPLMRNCYFGGAMHAVLLLQKGHGDQLASDIAGFIMEEPQS
Ga0318501_103805432	3300031736	Soil	MMRSCFFGGAIYALLLLQKGHGDQIACDIARFITEEPRS
Ga0306918_103571753	3300031744	Soil	VILPLMRNCFFGGAMHAVFLLQKGHGDQLASDIAGFIREEPQS
Ga0306918_106236382	3300031744	Soil	MRECFFGGAMHAVLLLQKDHGDELASDIFGFIMEESQS
Ga0318554_100273904	3300031765	Soil	MRNCFFGGAIYAVHLLKTGHGDQLASDIASFIMKEA
Ga0318509_102274743	3300031768	Soil	SLSELILSLMRNCFFGGAMHAVLLLQSGHGDQLAADIAGFIIKERQP
Ga0318521_109604841	3300031770	Soil	SEGPMNEVILPLMRNCFFGGALHAVLLLQKGHAEQLASDIAEFIQDEPQS
Ga0318546_109712272	3300031771	Soil	MRNCFFGGAIHAVRLLQQGHGDQLVFDIAGFIVEEPHS
Ga0318550_104407373	3300031797	Soil	VDTSLSELILPLMRNCFFGGAMHAVLLLQSGHGDQLAADIAGFIIKERQP
Ga0318497_103045192	3300031805	Soil	CFFGGAMYAVHLLQNGHGDQLASDIAGFIMQEPKS
Ga0310917_104931241	3300031833	Soil	RSCFFGGAMHAVLLLQNGHGDRLATDIAGFVSKEQS
Ga0306919_101343044	3300031879	Soil	ILPLMCNCFFGGAMHAVLLLQNGHGDQLASDIAGFIMKAPQE
Ga0306919_107064912	3300031879	Soil	VLLPLLRNCFFGGAVYAVLLLQKGHGEQVAADIAGFITEEPQS
Ga0306919_108128151	3300031879	Soil	LMRNCFFGGAVHAVLLLQKGHGDRLASDIAGFLIEEPQS
Ga0306919_110463882	3300031879	Soil	SLMRNCFFGGAMHAVLLLQSGYGDRLAADIAGFIMKERKS
Ga0306919_112622261	3300031879	Soil	NCFFGGAMHAVLLLQSGHGDQLAADIAGFIIKERQP
Ga0306925_114693842	3300031890	Soil	NCFFGGAVHAVLLLQKGHGNQLASDIAGFLMEEPQS
Ga0306925_121905932	3300031890	Soil	PLCEVILPLMRNCFFGGAMYAVHLLQNGHGDQLVSDIAGFITEQPQS
Ga0318551_101330284	3300031896	Soil	TEVIFPLMRTCFFGGAMYAVHLLQDGHGDQLVSDIAGFIMEDPQW
Ga0318520_109510991	3300031897	Soil	LILPLMRNCFFGGAMHAVLLLQSGHGDQLAADIAGFIIKERQP
Ga0306923_102146184	3300031910	Soil	VNEIILPLMRNCFLGGAMHAVFLLQKGHGDQLVSDIVSFIMEEPQS
Ga0306923_107693282	3300031910	Soil	CFFGGALHAVLLLQKGHAEQLASDIAEFIREEPQS
Ga0306923_119884231	3300031910	Soil	RCVIEGPLSKEILPLMRNCFFGGAIHAVHLLQQGHGDQLVFDIAGFIVEEPQS
Ga0306923_120539492	3300031910	Soil	EVILPLMRDCFFGGAMHAVFLLQKGHGDQLASDIAGFIMDEPQS
Ga0306921_100999976	3300031912	Soil	IILPLMRNCFFGGAVHAVLLLQKGHGDQRASDIAGFIKEPQS
Ga0306921_108324963	3300031912	Soil	MRNCFFGGAIHAVRLLQQGHGDQLVFDIAGFIVEEPQS
Ga0306921_115184331	3300031912	Soil	RDCFFGGAIYAFLLLQKGHGDHLACDIAGFITEEPRS
Ga0306921_116804052	3300031912	Soil	DCFFGGAIYALLLLQKGHGDQLACDIAGFITEEPRS
Ga0310912_109111841	3300031941	Soil	NCFFSGAVYAVLLLQKGHGEQVAADIAGFITEEPES
Ga0310916_103927661	3300031942	Soil	MRNCFFGGAMHAVFLLQKGHGDQLASDIAGFIREEPQS
Ga0310916_106795513	3300031942	Soil	MRECFFGGAMHAVLLLQKDHGDELASDIYGFIMEESQW
Ga0310910_106780021	3300031946	Soil	PLMRNCFFGGALHAVLLLQKGHAEQLASDIAEFIQDEPQS
Ga0310909_100424746	3300031947	Soil	AIFPLMRACFFGGAIHAVLLLQKGHANQLASDIAGFVLKEPQS
Ga0310909_108758641	3300031947	Soil	NCFFGGALHAVLLLQKGHAEQLASDIAEFIREEPQS
Ga0306926_104493713	3300031954	Soil	QTILPLMRNCFFGGAVHAVLLLQKGHGDRLASDIAGFLIEEPQS
Ga0306922_101392261	3300032001	Soil	VLPLMRNCFFGGAVHAVLLLQKGHGNQLASDIAGFLMKEPQS
Ga0306922_103587014	3300032001	Soil	ETILPLMRNCFFGGAVHAVLLLQKGHGDRLASDIAGFLIEEPQS
Ga0306922_105130681	3300032001	Soil	EILPLMRNCFFGGAIHAVRLLQQGHGDQLVFDIAGFIVEEPQS
Ga0310911_101647283	3300032035	Soil	PLSQVILPLMRNCFFGGAIHAVRLLQMGHGDQLVADIAGFIMKERGRD
Ga0307472_1024128421	3300032205	Hardwood Forest Soil	LGEGIFPLMRNCFFGGAMHAVLLLQNGHSDQLASDIAGFIMKEPQS
Ga0306920_1043358913	3300032261	Soil	FPLMRTCFFGGAMYAVHLLQDGHGDQLVSDIAGFIMEDPQW
Ga0310914_104418001	3300033289	Soil	TILPLMRNCFFGGAVHAFLLLQKGHGDRLASDIAGFLIEEPQS
Ga0318519_101470831	3300033290	Soil	SEVIFPLMRNCFFGGAMYAVHLLQNGHGDQLASDIAGFIMQEPKS
Ga0318519_106380941	3300033290	Soil	SLSELILPLMRNCFFGGAMHAVLLLQNGHGDQLAADFAGFITGELHL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084535

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences