Metagenome Family F084540

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084540
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	76 residues
Representative Sequence	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRDQFDLLI
Number of Associated Samples	84
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.11 %
% of genes near scaffold ends (potentially truncated)	33.04 %
% of genes from short scaffolds (< 2000 bps)	94.64 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.036 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (14.286 % of family members)
Environment Ontology (ENVO)	Unclassified (23.214 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.85% β-sheet: 15.09% Coil/Unstructured: 49.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.43.1.0: automated matches	d3maea_	3mae	0.64226
c.43.1.1: CAT-like	d1dpba_	1dpb	0.63988
c.43.1.1: CAT-like	d1scza_	1scz	0.63457
c.43.1.0: automated matches	d2ii3a_	2ii3	0.63429
c.43.1.0: automated matches	d3l60a_	3l60	0.6295

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF04226	Transgly_assoc	35.71
PF03795	YCII	4.46
PF05532	CsbD	2.68
PF12697	Abhydrolase_6	1.79
PF00211	Guanylate_cyc	1.79
PF07508	Recombinase	0.89
PF02371	Transposase_20	0.89
PF05235	CHAD	0.89
PF07719	TPR_2	0.89
PF02798	GST_N	0.89
PF00561	Abhydrolase_1	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	35.71
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.46
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	2.68
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.79
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.89
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.89
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.89
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.93 %
Unclassified	root	N/A	41.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.04 %
Unclassified	root	N/A	41.07 %
Viruses	superkingdom	All Organisms → Viruses	0.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.04 %
Unclassified	root	N/A	41.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.54 %
Unclassified	root	N/A	41.07 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	39.29 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.21 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.68 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.68 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.89 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.89 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	2.68 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2.68 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.89 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.07 %
Microvirga brassicacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga brassicacearum	2.68 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	2.68 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.89 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0566636	Not Available	602	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0495778	Not Available	556	Open in IMG/M
3300000891\|JGI10214J12806_10244502	Not Available	520	Open in IMG/M
3300000891\|JGI10214J12806_12395943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300000891\|JGI10214J12806_13225157	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300004114\|Ga0062593_101181783	Not Available	801	Open in IMG/M
3300004114\|Ga0062593_101235636	Not Available	787	Open in IMG/M
3300004157\|Ga0062590_100590249	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300004479\|Ga0062595_100461274	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300004481\|Ga0069718_13557010	Not Available	516	Open in IMG/M
3300005093\|Ga0062594_100916908	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300005331\|Ga0070670_101584693	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300005332\|Ga0066388_100417476	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300005332\|Ga0066388_102778870	Not Available	894	Open in IMG/M
3300005334\|Ga0068869_100945950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748	Open in IMG/M
3300005341\|Ga0070691_11090041	Not Available	503	Open in IMG/M
3300005441\|Ga0070700_100477220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	954	Open in IMG/M
3300005455\|Ga0070663_100110353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2066	Open in IMG/M
3300005457\|Ga0070662_100205618	Not Available	1564	Open in IMG/M
3300005563\|Ga0068855_100955051	All Organisms → cellular organisms → Bacteria → Proteobacteria	903	Open in IMG/M
3300005577\|Ga0068857_101995647	Not Available	569	Open in IMG/M
3300005578\|Ga0068854_101784871	Not Available	564	Open in IMG/M
3300005764\|Ga0066903_103274234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	875	Open in IMG/M
3300005764\|Ga0066903_107346399	Not Available	569	Open in IMG/M
3300006175\|Ga0070712_100590604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	939	Open in IMG/M
3300006871\|Ga0075434_100839100	Not Available	935	Open in IMG/M
3300006904\|Ga0075424_100160932	All Organisms → cellular organisms → Bacteria	2379	Open in IMG/M
3300007076\|Ga0075435_101058139	Not Available	709	Open in IMG/M
3300007076\|Ga0075435_101697831	Not Available	554	Open in IMG/M
3300009092\|Ga0105250_10146641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	980	Open in IMG/M
3300009094\|Ga0111539_10712130	Not Available	1169	Open in IMG/M
3300009094\|Ga0111539_11825335	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300009094\|Ga0111539_13494301	Not Available	504	Open in IMG/M
3300009098\|Ga0105245_10334236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1496	Open in IMG/M
3300009100\|Ga0075418_10512254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1289	Open in IMG/M
3300009100\|Ga0075418_13063701	Not Available	509	Open in IMG/M
3300009146\|Ga0105091_10171879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023	Open in IMG/M
3300009146\|Ga0105091_10437427	Not Available	656	Open in IMG/M
3300009148\|Ga0105243_10223125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1667	Open in IMG/M
3300009156\|Ga0111538_10585101	Not Available	1415	Open in IMG/M
3300009156\|Ga0111538_10600605	Not Available	1396	Open in IMG/M
3300009156\|Ga0111538_10837826	Not Available	1165	Open in IMG/M
3300009156\|Ga0111538_13098971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	580	Open in IMG/M
3300009157\|Ga0105092_10517186	Not Available	685	Open in IMG/M
3300009162\|Ga0075423_10680794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1085	Open in IMG/M
3300009168\|Ga0105104_10692484	Not Available	585	Open in IMG/M
3300010043\|Ga0126380_10483545	Not Available	945	Open in IMG/M
3300010399\|Ga0134127_12859933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	562	Open in IMG/M
3300010403\|Ga0134123_11506696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga brassicacearum	717	Open in IMG/M
3300011119\|Ga0105246_10396060	All Organisms → Viruses → Predicted Viral	1145	Open in IMG/M
3300011119\|Ga0105246_12546640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	504	Open in IMG/M
3300012507\|Ga0157342_1072618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300012951\|Ga0164300_10043767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1731	Open in IMG/M
3300012951\|Ga0164300_10570356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	662	Open in IMG/M
3300012955\|Ga0164298_10088950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1606	Open in IMG/M
3300012960\|Ga0164301_10677390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	773	Open in IMG/M
3300012971\|Ga0126369_10198560	All Organisms → cellular organisms → Bacteria → Proteobacteria	1932	Open in IMG/M
3300012985\|Ga0164308_10097252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2059	Open in IMG/M
3300012989\|Ga0164305_10181813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1460	Open in IMG/M
3300013308\|Ga0157375_13341855	Not Available	535	Open in IMG/M
3300015371\|Ga0132258_10590405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2788	Open in IMG/M
3300015371\|Ga0132258_10799570	All Organisms → cellular organisms → Bacteria → Proteobacteria	2378	Open in IMG/M
3300015371\|Ga0132258_11412953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1758	Open in IMG/M
3300015371\|Ga0132258_11775312	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300015371\|Ga0132258_12502992	Not Available	1291	Open in IMG/M
3300015372\|Ga0132256_102019110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga brassicacearum	683	Open in IMG/M
3300015372\|Ga0132256_102458728	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300015373\|Ga0132257_104436728	Not Available	511	Open in IMG/M
3300015374\|Ga0132255_100426037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1937	Open in IMG/M
3300015374\|Ga0132255_103623959	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300017792\|Ga0163161_10137749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1846	Open in IMG/M
3300018028\|Ga0184608_10057477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1548	Open in IMG/M
3300018072\|Ga0184635_10148040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	937	Open in IMG/M
3300018469\|Ga0190270_10436546	Not Available	1226	Open in IMG/M
3300018469\|Ga0190270_11736183	Not Available	678	Open in IMG/M
3300018476\|Ga0190274_10379603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1360	Open in IMG/M
3300018481\|Ga0190271_10440875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1404	Open in IMG/M
3300022694\|Ga0222623_10072178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1337	Open in IMG/M
3300023102\|Ga0247754_1122069	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300025915\|Ga0207693_10424639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1039	Open in IMG/M
3300025937\|Ga0207669_11604621	Not Available	555	Open in IMG/M
3300025940\|Ga0207691_10828742	Not Available	776	Open in IMG/M
3300025961\|Ga0207712_10082028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2350	Open in IMG/M
3300026075\|Ga0207708_10609340	All Organisms → cellular organisms → Bacteria → Proteobacteria	926	Open in IMG/M
3300027675\|Ga0209077_1182482	Not Available	586	Open in IMG/M
3300027717\|Ga0209998_10087883	Not Available	759	Open in IMG/M
3300027907\|Ga0207428_10658837	Not Available	751	Open in IMG/M
3300028381\|Ga0268264_10180805	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1915	Open in IMG/M
3300028381\|Ga0268264_11217330	Not Available	763	Open in IMG/M
3300028381\|Ga0268264_11314667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300028587\|Ga0247828_10085086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1462	Open in IMG/M
3300028592\|Ga0247822_10484927	Not Available	976	Open in IMG/M
3300028592\|Ga0247822_11803257	Not Available	522	Open in IMG/M
3300028819\|Ga0307296_10081490	All Organisms → cellular organisms → Bacteria → Proteobacteria	1725	Open in IMG/M
3300031226\|Ga0307497_10141265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	990	Open in IMG/M
3300031547\|Ga0310887_10529322	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300031820\|Ga0307473_10653729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300031847\|Ga0310907_10841814	Not Available	516	Open in IMG/M
3300031854\|Ga0310904_10483761	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
3300031854\|Ga0310904_10810964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300031858\|Ga0310892_10634335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga brassicacearum	727	Open in IMG/M
3300031908\|Ga0310900_11368279	Not Available	594	Open in IMG/M
3300031944\|Ga0310884_10477258	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300031949\|Ga0214473_10768655	Not Available	1042	Open in IMG/M
3300032003\|Ga0310897_10495781	Not Available	592	Open in IMG/M
3300032012\|Ga0310902_10705781	Not Available	680	Open in IMG/M
3300032013\|Ga0310906_10623102	Not Available	746	Open in IMG/M
3300032013\|Ga0310906_11124538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300032075\|Ga0310890_10162667	Not Available	1491	Open in IMG/M
3300032075\|Ga0310890_10970440	Not Available	682	Open in IMG/M
3300032174\|Ga0307470_10470790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300032180\|Ga0307471_100496339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1368	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.04%
Host-Associated	Host-Associated	41.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Plants	Host-Associated → Plants	41.96%
Aquatic	Environmental → Aquatic	8.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.07%
Freshwater	Environmental → Aquatic → Freshwater	5.36%
Sediment	Environmental → Aquatic → Sediment	2.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.93%
Loam	Environmental → Terrestrial → Soil → Loam	8.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.25%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.68%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	14.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.68%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	14.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.14%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_05666361	2228664022	Soil	MSDKPRKTAADLKLIIEERLRAGHPECERAEVVINPPVAGQPWAASLFGTGPTIDQECRKRMDSIVA
ICChiseqgaiiDRAFT_04957782	3300000033	Soil	MIIPDKSRKTXAELKLMIEEKLLAGHPECEKAEVVINTPVAGYPWLAAIFGVGPPIFECRRKLEGIVKQLREVVVESR*
JGI10214J12806_102445021	3300000891	Soil	MSDKPRKTAADLKLIIEERLRAGHPECERAEVVINPPVAGQPWAASLFGTGPTIDQECRTRMDSIVAQLREQFDLA*
JGI10214J12806_123959432	3300000891	Soil	MPDKSRKTAAELKLMIEEKLLADHPDCERAEVVINPPVAGRSWSAAIFGVGPTIDSECRRTLEGIVGQLRDQFDLLT*
JGI10214J12806_132251572	3300000891	Soil	VGTSELDCHVMPDKLRKTASDLKLMIEEKLRAGHPDCERAEVIINPPTAGRPWSAAMFGQGPTIDQECRRRLEGIVEQLRDKFDLA*
Ga0062593_1011817831	3300004114	Soil	MSDKPRKTAADLKLIIEERLRAGHPECERAEVVINPPVAGQPWAASLFGTGPTIDQECRKRMDSIVAQLREQFDLA*
Ga0062593_1012356362	3300004114	Soil	MSDKPRKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDHKCRRRMESIVAQLRDKFDLA*
Ga0062590_1005902491	3300004157	Soil	MPDKLRKTASDLKLMIEEKLRAGHPDCERAEVIINPPTAGRPWSAAMFGQGPTIDQECRRRLEGIVEQLRDKFDLA*
Ga0062595_1004612742	3300004479	Soil	MIMPDKSRKTAAELKLMIEEKLLADHPDCERAEVVINPPVAGRSWSAAIFGVGPTIDLEGIVGQLRDQFDLLT*
Ga0069718_135570102	3300004481	Sediment	MSDRCKKTASDLKLMIEERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTINQECRRRVEAIVAELRERFDQQALDHGVDA*
Ga0062594_1009169082	3300005093	Soil	MCSRPKKTASDLKLMIEERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQDCRRRVEAIVAELRERFDLASS*
Ga0070670_1015846931	3300005331	Switchgrass Rhizosphere	KTASDLKLMIEEKLRAGHPDCERAEVIINPPTAGRPWSAAMFGQGPTIDQECRRRLEGIVEQLRDKFDLA*
Ga0066388_1004174762	3300005332	Tropical Forest Soil	MKLMLPKRKKTAADLKLAIEARLRISHPECERAEVIINPLVQDLPWGVSLLGVNPMIDHECGRQVEAIVAELQKEFDLA*
Ga0066388_1027788701	3300005332	Tropical Forest Soil	MPSDSYPKVRKSATDLKVMIEEKLRRDHPACRYAEVIISPPAGGLPWSASVFGEGPTIDQECRRKIDGIVAQLREEYDLA*
Ga0068869_1009459501	3300005334	Miscanthus Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGYPDCERAELAKILPPLDTLVAAIFGVGPTIFECRRELEGIVEQLRDQFDLLI*
Ga0070691_110900413	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	IIEERLRSGHPESERAEVVINPRVAGQPWAASLFGAGPRIDQECRRRMESIVAQLRDKFDLA*
Ga0070700_1004772201	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MCSRPKKTASDLKLMIEERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQECRRKVEAIVAELRERFDLASS*
Ga0070663_1001103535	3300005455	Corn Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFQCRRKLEGIVEQLRDQFDLLI*
Ga0070662_1002056185	3300005457	Corn Rhizosphere	RKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDHKCRRRMESIVAQLRDKFDLA*
Ga0068855_1009550511	3300005563	Corn Rhizosphere	IVMTIPYKSRKTAAELKLMIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFQCRRKLEGIVEQLRDQFDLLI*
Ga0068857_1019956471	3300005577	Corn Rhizosphere	EERLRSGHPEYERAEVVITSRVAGQPWAASLFGAGPTIDHKCRRRMESIVAQLRDKFDLA
Ga0068854_1017848711	3300005578	Corn Rhizosphere	MSDKPRKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDQECRRRMESIVAQLRDKFDLA*
Ga0066903_1032742342	3300005764	Tropical Forest Soil	MNIPNKSRKTAAELKLMIEEKLLAGHADCERAEVIISPPAAGRHWSASIFGVGPSIFECRKKLDAIVEQLRHRFDLLT*
Ga0066903_1073463992	3300005764	Tropical Forest Soil	MPSDSYPKVRKSATDLKVMIEEKLRRDHPACRYAEVIISPPAGGLPWSASVFGEGPTIDQECRRRIDGIVAQLREEYDLA*
Ga0070712_1005906042	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIIPDKPRTTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRDSHRLCPLWVINGRRGITS*
Ga0075434_1008391001	3300006871	Populus Rhizosphere	MPEKATKTAAELKLMIEDKLRAGHPECKRAEVVINPPVAGRPWSAAIFGEGPTIDHECRRRLEGIVEQLREQFDLT*
Ga0075424_1001609322	3300006904	Populus Rhizosphere	MPEKATKTAAELKLMIEDKLRAGHPECKRAEVVINPPVAGCPWSAAIFGEGPTIDHECRRRLEGIVEQLREQFDLT*
Ga0075435_1010581391	3300007076	Populus Rhizosphere	KTAAELKLMIEEKLLADHPDCERAEVVINPPVAGRSWSAAIFGVGPTIDSECRRTLEGIVGQLRDQFDLLT*
Ga0075435_1016978311	3300007076	Populus Rhizosphere	ELPLVMPEKATKTAAELKLMIEDKLRAGHPECKRAEVVINPPVAGCPWSAAIFGEGPTIDHECRRRLEGIVEQLREQFDLT*
Ga0105250_101466413	3300009092	Switchgrass Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGHPDCETAEVVINPPAAGRPWGAAVFGTGPTIDYECRRRVEGIVEQLREQFDLA*
Ga0111539_107121302	3300009094	Populus Rhizosphere	VRHLAGASSFDAMELPLVMPEKATKTAAELKLMIEDKLRAGHPECKRAEVVINPPVAGCPWSAAIFGEGPTIDHECRRRLEGIVEQLREQFDLT*
Ga0111539_118253351	3300009094	Populus Rhizosphere	VGTSDLDGVMPDKLRTTASELKLMIEEKLRAGHPDCERAEVIINPPAAGRPWSAALFGQGPTIDQECRRRLEGIVEQLRDKFDLA*
Ga0111539_134943011	3300009094	Populus Rhizosphere	MSDKPRKTAAELKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDHKCRRRMESIVAQLRDKFDLA*
Ga0105245_103342361	3300009098	Miscanthus Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRKKLEGIVEQLRDQFDLLI*
Ga0075418_105122542	3300009100	Populus Rhizosphere	MPDKQRKTASDLKLMIEEKLRAGHPDCERAEVIINPPADGVSWSAAIFGQGPTIDQECRKRMDEIVERLRDEFDLA*
Ga0075418_130637011	3300009100	Populus Rhizosphere	MSDKPRKTAADLKLIIEERLRAGHPECERAEVVINPPVAGQPWAASLFGTGPSIDQECRKRMDSI
Ga0105091_101718791	3300009146	Freshwater Sediment	MPDKQRKTGSDLKLMIEEKLRAGHPDCERAEVIINPPAAGRSWSADEFGQGPTIDQECRRRLEGIVEQLRDKFDLV*
Ga0105091_104374271	3300009146	Freshwater Sediment	MSDKPRKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDHECRRRMESIVAQLRDKFDLA*
Ga0105243_102231252	3300009148	Miscanthus Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRDQFDLLI*
Ga0111538_105851012	3300009156	Populus Rhizosphere	MSIRPKKTASDLKLMIEERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQDCRRRVEAIVAELRERFDLASS*
Ga0111538_106006053	3300009156	Populus Rhizosphere	MSDKPRKTAADLKLIIEQRLRAGHPECERAEVVINPPVAGQPWAASLFGTGPTIDQECRKRMDSIVAQLREQFDLA*
Ga0111538_108378261	3300009156	Populus Rhizosphere	VRHLAGASSFDAMELPLVMPEKATKTAAELKLMIEDKLRAGHPECKRAEVVINPPVAGRPWSAAIFGEGPTIDHECRRRLEGIVEQLREQFDLT*
Ga0111538_130989711	3300009156	Populus Rhizosphere	MSDKPRKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDHKCRRRMESIVAQLRDK
Ga0105092_105171863	3300009157	Freshwater Sediment	ATMLRAKAIFMKDRPKKTASDLKLMIEEKLRSGHPECERAEVVINPPAKGLPWSASIFGEGPTIDQECRRRIEGIVAELREQFDLA*
Ga0075423_106807942	3300009162	Populus Rhizosphere	ALRAAEAFRPFDVTMPDKLRKTAIQLKLMIEEKLLAGHPNCERAEVVINPPAAGHPWSAAIFGVGPTIFECRKRLDGIVEQLRDQFDLLT*
Ga0105104_106924842	3300009168	Freshwater Sediment	MSDKPRKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGVEPTIDQECRRRMESIVTQLRDKFDLP*
Ga0126380_104835452	3300010043	Tropical Forest Soil	MKLMLPKRKKTAADLKLAVEARLRISHPECERAEVIINPLVQDLPWGVSLLGVNPMIDHECGRQVEAIVAELQKEFDLA*
Ga0134127_128599331	3300010399	Terrestrial Soil	SGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQDCRRRVEAIVAELRERFDLASS*
Ga0134123_115066962	3300010403	Terrestrial Soil	VMTIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFQCRRKLEGIVEQLRDQFDLLI*
Ga0105246_103960602	3300011119	Miscanthus Rhizosphere	MPDKLRTTASELKLMIEERLRAGHPDCERAEVIINPPAAGRPWSAALFGQGPTIDQECRSRLDDIVERFRNQFDLA*
Ga0105246_125466402	3300011119	Miscanthus Rhizosphere	MSDKPRKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWASSLFGAGPTIDHKCRRRMESIVAQLR
Ga0157342_10726182	3300012507	Arabidopsis Rhizosphere	MIIPDKSRKTAAELKLMIEEKLLAGHPNCKRAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRDHSS*
Ga0164300_100437673	3300012951	Soil	VMIIPDKPRKTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFRCRRKLEGIVEQLRDQFDLLI*
Ga0164300_105703561	3300012951	Soil	AAELKLLIEEKLLAGHPDCERAEVVINPPAAGRPWSAAIFGVGPTIFECRRKLDGVVEQLRDQFDLLI*
Ga0164298_100889502	3300012955	Soil	MIIPDKPRKTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFRCRRKLEGIVEQLRDRFDLLI*
Ga0164301_106773902	3300012960	Soil	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGRPWSAAIFGVGPTIFECRRKLDGVVEQLRDQFDLLI*
Ga0126369_101985604	3300012971	Tropical Forest Soil	MPKPERRNLRYLRKNMPSDSYPKVRKSATDLKVMIEEKLRRDHPACRYAEVIISPPAGGLPWSASVFGEGPAIDQECRRRIDGIVAQLREEYDLA*
Ga0164308_100972521	3300012985	Soil	MIIPDKPRKTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRDQFDLLI*
Ga0164305_101818132	3300012989	Soil	MIIPDKPRKTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFRCRRKLEGIVEQLRDQFDLLI*
Ga0157375_133418551	3300013308	Miscanthus Rhizosphere	LIIEERLRSGHPECERAEVVINPRVAGQPWAASLFGAGPTIDQECRRRMESIVAQLRDKFDLA*
Ga0132258_105904053	3300015371	Arabidopsis Rhizosphere	MIILDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRELEGIVEQLRDQFDLLI*
Ga0132258_107995702	3300015371	Arabidopsis Rhizosphere	MKFFRFGIVMIIPDKSRKTAAELKLMIEEKLLAGHPDCERAEVVINPPAAGRPWSATIFGVGPTIFECRRKLDGIVEQLRDQFDLLI*
Ga0132258_114129532	3300015371	Arabidopsis Rhizosphere	MPDKLRKTAIQLKLMIEEKLLAGHPNCERAEVVINPPAAGHPWSAAIFGVGPTIFECRKRLDGIVEQLRDQFDLLT*
Ga0132258_117753123	3300015371	Arabidopsis Rhizosphere	MIIPDKSRKTAAELKLMIEEKLLAGHPDCERAEVVINPPAAGGPWSAAIFGVGPTIFECRRKLEGIVEQLRDHSS*
Ga0132258_125029923	3300015371	Arabidopsis Rhizosphere	MMIALLKRKKTAADLKLAIEARLRISHPECERAEVIINPPIHDLPWGVSLLGVNPMIDHECNRQVEAIVAELQKEFDLA*
Ga0132256_1020191101	3300015372	Arabidopsis Rhizosphere	IQLKLMIEEKLLAGHPNCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRAQFDLLI*
Ga0132256_1024587281	3300015372	Arabidopsis Rhizosphere	IQLKLMIEEKLLAGHPNCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRELEGIVEQLRDQFDLLI*
Ga0132257_1044367282	3300015373	Arabidopsis Rhizosphere	RKTAAELKLMIEEKLLAGHPDCERAEVVINPPAAGGPWSAAIFGVGPTIFECRRKLEGIVEQLRDHSS*
Ga0132255_1004260373	3300015374	Arabidopsis Rhizosphere	MITPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGPPWSAAIFGVGPTIFECRRELEGIVEQLRDQFDLLI*
Ga0132255_1036239591	3300015374	Arabidopsis Rhizosphere	MKFFRFGIVMIIPDKSRKTAAELKLMIEEKLLAGHPDCERAEVVINPPAAGRPWSATIFGVGPTIFECRRELEGIVGQLRDQFDLLI*
Ga0163161_101377491	3300017792	Switchgrass Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGYPDCERAEVAINPPAAGHPWSAAIFGVGPTIFECRSKLEGIVEQLRDQFDLLI
Ga0184608_100574773	3300018028	Groundwater Sediment	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGRPWSAAIFGVGPTIFECRRKLEGIVEQLRDQFDLLI
Ga0184635_101480403	3300018072	Groundwater Sediment	MTIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRSKLEGIVEQLRDQFDLLI
Ga0190270_104365463	3300018469	Soil	MIEERLRSGHSECERAEVIINPPAKGLPWSASLFGEGPTIDQECRRRVEAIVAKLRERFDLASS
Ga0190270_117361831	3300018469	Soil	HPDYERAEVVINSRVAGQPWAASLFGAGPTIDRKCRRRMESIVAQLRDKFDLA
Ga0190274_103796033	3300018476	Soil	MPDKLRTTASELKLMIEERLRAAHPDCERAEVIINPPAAGRPWSAALFGQGPNIDQECRTRLEGIVEQLRDKFDLA
Ga0190271_104408753	3300018481	Soil	MSDKPTKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDRKCRRRMESIVAQLRDKFDLA
Ga0222623_100721782	3300022694	Groundwater Sediment	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGRPWSAAIFGVGPTIFQCRRKLEGIVEQLRDQFDLLI
Ga0247754_11220692	3300023102	Soil	IRPKKTASDLKLMIEERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQDCRRRVEAIVAELRERFDLASS
Ga0207693_104246392	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MIIPDKPRTTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRDSHRLCPLWVINGRRGITS
Ga0207669_116046211	3300025937	Miscanthus Rhizosphere	IEERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQECRRKVEAIVAELRERFDLASS
Ga0207691_108287423	3300025940	Miscanthus Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRKKLEGIVEQLRDQFDLLI
Ga0207712_100820286	3300025961	Switchgrass Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRDQFDLLI
Ga0207708_106093402	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPDKLRTTASELKLMIEERLRASHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFQCRRKLEGIVEQLRDQFDLLI
Ga0209077_11824822	3300027675	Freshwater Sediment	MSDKPRKTAADLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDHECRRRMESIVAQLRDKFDLA
Ga0209998_100878832	3300027717	Arabidopsis Thaliana Rhizosphere	LDAMGLPLVMPDKSTKTAAELKLMIEDKLRAGHPECKRAEVVINPPVAGRPWSAAIFGEGPTIDHECRRRLEGIVEQLREQFDLT
Ga0207428_106588371	3300027907	Populus Rhizosphere	MELPLVMPEKATKTAAELKLMIEDKLRAGHPECKRAEVVINPPVAGCPWSAAIFGEGPTIDHECRRRLEGIVEQLREQFDLT
Ga0268264_101808054	3300028381	Switchgrass Rhizosphere	MVIRSTTWIWVCRPLSVVTSDLGGVMPDKLRTTASELKLMIEERLRASHPDCERAEVIINPPAAERPWSAALFGQGPTIDQECRKRLEGIVEQLRDKFDLA
Ga0268264_112173301	3300028381	Switchgrass Rhizosphere	MSIRPKKTASDLKLMIEERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQDCRRRVEAIVAELRERFDLASS
Ga0268264_113146671	3300028381	Switchgrass Rhizosphere	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFQCRRKLEGIVEQLRDQFDLLI
Ga0247828_100850864	3300028587	Soil	MIIPDKPRKTAAELKLLIEEKLLAGHPDCEKAEVVINPPAAEHPWSAAIFGVGPTIFECRRKLEGIVEQLRDQFDLLI
Ga0247822_104849274	3300028592	Soil	LRKTASDLKLMIEEKLRAGHPDCERAEVIINPPAAGRPWSAAIFGQGPTIDQECRRRLEGIVEQLRDKFDLA
Ga0247822_118032572	3300028592	Soil	IIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDHECRRRMESIVAQLRDKFDLA
Ga0307296_100814903	3300028819	Soil	MIIPGKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAEHPWSAAIFGVGPNIFECRRKLEGIVEQLRDQFDLLI
Ga0307497_101412651	3300031226	Soil	MIIPDKPRKTAAELKLLIEEKLLAGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFRCRRKLEGIVEQLRDQFDLLI
Ga0310887_105293222	3300031547	Soil	MMIEERLRAGHPDCERAEVIINPPAAGRPWSAALFGQGPTIDQECRKRLEGIVEQLRDKFDLA
Ga0307473_106537292	3300031820	Hardwood Forest Soil	VIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLDGVVEQLRDQFDLLI
Ga0310907_108418141	3300031847	Soil	SDLKLMIEERLRSGHPECERAEVIINPPANGLPWSASVFGEGPTIDQECRRRVEAIVAELRERFDLASS
Ga0310904_104837611	3300031854	Soil	PKKTASDLKLMIEERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQECRRRVEAIVAELRELAT
Ga0310904_108109642	3300031854	Soil	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRRKLEGIVEQLRDSHRL
Ga0310892_106343352	3300031858	Soil	IIPDKPRKTAAELKLLIEEKLLTGYPDCERAEVVINPPAAGHPWSAAIFGVGPTIFQCRRKLEGIVEQLRDQFDLLI
Ga0310900_113682791	3300031908	Soil	DLKLIIEERLRSGHPEYERAEVVINSRVAGQPWAASLFGAGPTIDQECRRRMESIVAQLRDKFDLA
Ga0310884_104772582	3300031944	Soil	MPDKLRTTASELKLMIEERLRASHPDCERAEVIINPPAAGRPWSAALFGQGPTIDQECRRRLEGIVESSASSSIWLNDTATT
Ga0214473_107686552	3300031949	Soil	MSDRPKKTASDLKLMIEEKLRSGHPECERAEVVINPPAKGLPWSASIFGEGPTIDQECRQRIEGIVAELRERFDLA
Ga0310897_104957811	3300032003	Soil	MPDKLRTTASELKLMIEERLRASHPDCERAEVIINPPAAGRPWSAALFGQGPTIDQECRTRLEGIVEQLRDKFDLA
Ga0310902_107057813	3300032012	Soil	EYERAEVLINSRVAGQPWAASLFGAGPTIDHKCRRRMESIVAQLRDKFDLA
Ga0310906_106231021	3300032013	Soil	MMIEERLRAGHPDCERAEVIINPPAAGRPWSAALFGQGPTIDQECRTRLEGIVEQLRDKFDLA
Ga0310906_111245382	3300032013	Soil	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIFECRSKLEGIVEQLRDQFDLLI
Ga0310890_101626674	3300032075	Soil	ERLRSGHPECERAEVIINPPAKGLPWSASLFGEGPTIDQECRRRVEAIVAELRERFDLAS
Ga0310890_109704403	3300032075	Soil	AADLKLIIEERLRSGHPECERAEVVINPRVAGQPWGASLFGAGPTIDQECRRRMESIVAQLRDKFDLA
Ga0307470_104707903	3300032174	Hardwood Forest Soil	MIIPDKSRKTAAELKLMIEEKLLAGHPDCERAEVVINPPAAGRPWSAAIFGVGPTIFECRRKLEGIVEQLRDQFDLLI
Ga0307471_1004963393	3300032180	Hardwood Forest Soil	MIIPDKPRKTAAELKLLIEEKLLAGHPDCERAEVVINPPAAGHPWSAAIFGVGPTIVECRRKLEGIVEQLRDQFDLLI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084540

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences