Metagenome / Metatranscriptome Family F084662

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084662
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	55 residues
Representative Sequence	EAMYTAQGLTVPEAGPQLSSAGDKPLHKLSDPIEKESPEKGVTPPSKRAAKRSSK
Number of Associated Samples	95
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.94 %
% of genes near scaffold ends (potentially truncated)	91.96 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.393 % of family members)
Environment Ontology (ENVO)	Unclassified (21.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.571 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.05% β-sheet: 0.00% Coil/Unstructured: 87.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03544	TonB_C	13.39
PF00291	PALP	10.71
PF13682	CZB	9.82
PF02627	CMD	2.68
PF13088	BNR_2	1.79
PF01035	DNA_binding_1	1.79
PF04542	Sigma70_r2	1.79
PF00082	Peptidase_S8	1.79
PF13442	Cytochrome_CBB3	1.79
PF04365	BrnT_toxin	0.89
PF12680	SnoaL_2	0.89
PF00535	Glycos_transf_2	0.89
PF08818	DUF1801	0.89
PF11845	DUF3365	0.89
PF00378	ECH_1	0.89
PF09699	Paired_CXXCH_1	0.89
PF10099	RskA	0.89
PF08002	DUF1697	0.89
PF00482	T2SSF	0.89
PF06778	Chlor_dismutase	0.89
PF10518	TAT_signal	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	13.39
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	2.68
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	2.68
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	1.79
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.79
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.79
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.79
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	1.79
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.79
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.89
COG3253	Coproheme decarboxylase/chlorite dismutase	Coenzyme transport and metabolism [H]	0.89
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.89
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.89
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.32 %
Unclassified	root	N/A	27.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.32 %
Unclassified	root	N/A	27.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.32 %
Unclassified	root	N/A	27.68 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.82 %
Unclassified	root	N/A	27.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	28.57 %
Unclassified	root	N/A	27.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.46 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.79 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.57 %
Unclassified	root	N/A	27.68 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.46 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.89 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.57 %
Unclassified	root	N/A	27.68 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.68 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	1.79 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.89 %
Desulfovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales	0.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.57 %
Unclassified	root	N/A	27.68 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.89 %
Desulfovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae	0.89 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.57 %
Unclassified	root	N/A	27.68 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.79 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.89 %
Desulfovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio	0.89 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.57 %
Unclassified	root	N/A	27.68 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.79 %
Desulfovibrio sulfodismutans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio sulfodismutans	0.89 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.89 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10062256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1666	Open in IMG/M
3300004091\|Ga0062387_100086095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1644	Open in IMG/M
3300004091\|Ga0062387_101232336	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300004153\|Ga0063455_100077390	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1273	Open in IMG/M
3300005439\|Ga0070711_100736670	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300005533\|Ga0070734_10161760	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300005534\|Ga0070735_10267962	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1033	Open in IMG/M
3300005591\|Ga0070761_10524397	Not Available	732	Open in IMG/M
3300005610\|Ga0070763_10188865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1094	Open in IMG/M
3300006059\|Ga0075017_100528352	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300006162\|Ga0075030_100563024	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300006172\|Ga0075018_10803191	Not Available	516	Open in IMG/M
3300006173\|Ga0070716_100075039	All Organisms → cellular organisms → Bacteria	2000	Open in IMG/M
3300006174\|Ga0075014_100820418	Not Available	551	Open in IMG/M
3300006176\|Ga0070765_100329807	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300006176\|Ga0070765_101424514	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300006800\|Ga0066660_11086879	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300006871\|Ga0075434_100566579	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300007982\|Ga0102924_1130702	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300009029\|Ga0066793_10345395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300009624\|Ga0116105_1022942	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1321	Open in IMG/M
3300009624\|Ga0116105_1054375	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	927	Open in IMG/M
3300009665\|Ga0116135_1056536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1370	Open in IMG/M
3300009762\|Ga0116130_1254864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300009839\|Ga0116223_10054097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2612	Open in IMG/M
3300010048\|Ga0126373_11962931	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300010358\|Ga0126370_11748080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300010362\|Ga0126377_11323321	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300010398\|Ga0126383_11093687	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300011120\|Ga0150983_13724973	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300012469\|Ga0150984_107659665	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	932	Open in IMG/M
3300012929\|Ga0137404_12195906	Not Available	516	Open in IMG/M
3300012930\|Ga0137407_11393756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300014164\|Ga0181532_10481034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300017823\|Ga0187818_10425050	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300017948\|Ga0187847_10204114	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300017955\|Ga0187817_10382262	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300017955\|Ga0187817_11043040	Not Available	524	Open in IMG/M
3300018007\|Ga0187805_10363960	Not Available	669	Open in IMG/M
3300018047\|Ga0187859_10013100	All Organisms → cellular organisms → Bacteria	4708	Open in IMG/M
3300018062\|Ga0187784_10727468	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300018062\|Ga0187784_11290687	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300018085\|Ga0187772_10895331	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300018088\|Ga0187771_11680913	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300019786\|Ga0182025_1013907	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300019890\|Ga0193728_1000785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15796	Open in IMG/M
3300020580\|Ga0210403_10650582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300020581\|Ga0210399_11262172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300021168\|Ga0210406_11183340	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300021404\|Ga0210389_10615408	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300021407\|Ga0210383_11516168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300021420\|Ga0210394_10130487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2178	Open in IMG/M
3300021420\|Ga0210394_11261297	Not Available	633	Open in IMG/M
3300021432\|Ga0210384_10279850	Not Available	1502	Open in IMG/M
3300021432\|Ga0210384_10865435	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300021474\|Ga0210390_10810317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300021478\|Ga0210402_11018983	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300022726\|Ga0242654_10449052	Not Available	503	Open in IMG/M
3300022873\|Ga0224550_1041435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300022881\|Ga0224545_1045525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300024295\|Ga0224556_1045931	All Organisms → cellular organisms → Bacteria → Acidobacteria	1083	Open in IMG/M
3300025414\|Ga0208935_1005135	Not Available	1873	Open in IMG/M
3300025414\|Ga0208935_1009714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1321	Open in IMG/M
3300025939\|Ga0207665_10078428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2269	Open in IMG/M
3300026928\|Ga0207779_1018812	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300027109\|Ga0208603_1040472	All Organisms → cellular organisms → Bacteria → Terrabacteria group	719	Open in IMG/M
3300027565\|Ga0209219_1154392	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300027568\|Ga0208042_1177952	Not Available	529	Open in IMG/M
3300027625\|Ga0208044_1050207	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300027641\|Ga0208827_1134244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300027867\|Ga0209167_10082590	Not Available	1621	Open in IMG/M
3300027879\|Ga0209169_10174087	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300028047\|Ga0209526_10836806	Not Available	566	Open in IMG/M
3300028780\|Ga0302225_10355069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300028780\|Ga0302225_10444255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	607	Open in IMG/M
3300028873\|Ga0302197_10348311	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300028906\|Ga0308309_11278759	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300029882\|Ga0311368_10059873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3425	Open in IMG/M
3300029918\|Ga0302143_1046119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1001	Open in IMG/M
3300029943\|Ga0311340_11095743	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio sulfodismutans	648	Open in IMG/M
3300029956\|Ga0302150_10253138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300029993\|Ga0302304_10108642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1058	Open in IMG/M
3300029999\|Ga0311339_10464688	Not Available	1298	Open in IMG/M
3300030520\|Ga0311372_12468211	Not Available	586	Open in IMG/M
3300030618\|Ga0311354_10202423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2121	Open in IMG/M
3300030659\|Ga0316363_10242373	Not Available	736	Open in IMG/M
3300030688\|Ga0311345_10878533	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300030743\|Ga0265461_12895972	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300030743\|Ga0265461_13435885	Not Available	536	Open in IMG/M
3300031231\|Ga0170824_100271793	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300031231\|Ga0170824_115781449	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300031231\|Ga0170824_125355848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1270	Open in IMG/M
3300031446\|Ga0170820_13166338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300031446\|Ga0170820_17611646	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300031708\|Ga0310686_103815035	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1270	Open in IMG/M
3300031708\|Ga0310686_112285857	Not Available	512	Open in IMG/M
3300031708\|Ga0310686_117206939	Not Available	550	Open in IMG/M
3300031718\|Ga0307474_11181300	Not Available	605	Open in IMG/M
3300031754\|Ga0307475_11441959	Not Available	530	Open in IMG/M
3300031955\|Ga0316035_125374	Not Available	502	Open in IMG/M
3300032805\|Ga0335078_10195017	All Organisms → cellular organisms → Bacteria	2819	Open in IMG/M
3300032892\|Ga0335081_10142085	All Organisms → cellular organisms → Bacteria	3454	Open in IMG/M
3300032892\|Ga0335081_12390924	Not Available	550	Open in IMG/M
3300032892\|Ga0335081_12547022	Not Available	527	Open in IMG/M
3300034124\|Ga0370483_0075175	Not Available	1092	Open in IMG/M
3300034199\|Ga0370514_180144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.32%
Host-Associated	Host-Associated	2.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.57%
Aquatic	Environmental → Aquatic	18.75%
Plants	Host-Associated → Plants	2.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.18%
Freshwater	Environmental → Aquatic → Freshwater	14.29%
Peat	Environmental → Terrestrial → Peat	13.39%
Sediment	Environmental → Aquatic → Sediment	3.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.68%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.29%
Loam	Environmental → Terrestrial → Soil → Loam	15.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.36%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.57%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.39%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.46%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.57%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.57%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.57%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.57%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.68%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.79%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026928	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029918	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300029993	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031955	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE1 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_100622562	3300004080	Bog Forest Soil	AMYTAQGLTVAEAGPQFSSAGDKPLHNLSDPIEKERPEKGVVPPSKRAAKRSSK*
Ga0062387_1000860953	3300004091	Bog Forest Soil	SGSTFDEAMYTAQGLTVAEAGPQFSSAGDKPLHNLSDPIEKERPEKGVVPPSKRAAKRSSK*
Ga0062387_1012323362	3300004091	Bog Forest Soil	GVAFNEAMYTATNLTVAEAGPQLSSAHDRPLHNLSDAIEKERPEKGVTPPSKRAVKLSSK
Ga0063455_1000773901	3300004153	Soil	NSGATFSEAMYTGQGLTASASGRQISSANDRPLHNVSDKIEREIPEKGRVPPNRRAKRNAK*
Ga0070714_1013399271	3300005435	Agricultural Soil	FNEAMYTAKGLTVIASGQQLSSAHDQPLHHLSDKIEREASEKGRIPPNRRRARRSAQQ*
Ga0070711_1007366701	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MYTAQGLTVAADGAVLSSAGDKPLHKLSDKIEKESPEKGFVPPSKRSAKRSQK*
Ga0070734_101617601	3300005533	Surface Soil	AIYTAQGLTAELALAGPQLSSEGDKPLHNLSDPIPKEKPERGIPPSRRTARSSVK*
Ga0070735_102679622	3300005534	Surface Soil	NESMFTAQGLTVPEDGPQFSSAGDKPLHKLSDVIEKERPEKGVMPPSKKAAKRSAK*
Ga0070761_105243972	3300005591	Soil	TALSGTTFNEAMYTGQGLSVAAAGRQYSSAKDKPLHKLSDAIETEHPEKGVRPPGRKKARKK*
Ga0070763_101888651	3300005610	Soil	QGLTVPEGGPQFSSAGDRPLHRLSDPIEKERPEKGIPPLKRRAQQSAK*
Ga0075017_1005283522	3300006059	Watersheds	GTAFKEAMYTAEGLTVPATGAVLSSAGDKPLHALSDKIEKERPEKGAIPPMRRAARRSAK
Ga0075030_1005630242	3300006162	Watersheds	FDEAIYTGQGLTVKAAGRQLSSAGDRALHKMSDKIEREHPEKGVIPPSRRRARKSAR*
Ga0075018_108031912	3300006172	Watersheds	TFNEAMNTAQGLTVPEAGPQFSSKGDKVLHTLSDVIEKEHPEKGVMPPSKRAAKRSVK*
Ga0070716_1000750391	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	QGLTVAADGAVLSSAGDKPLHKLSDKIEKESPEKGFVPPSKRSAKRSQK*
Ga0075014_1008204181	3300006174	Watersheds	YKEAMYTADGLTVPAAGAMLSAAGDKPLHALSDKIEKERPEKGSVPPLPRAAKRSAK*
Ga0070765_1003298071	3300006176	Soil	VNSGSTFNEAMYTGQGLTVKAAGRQLSSKNDRPLHKLSDEIEREHPEKGVRPPMKKKAEKK*
Ga0070765_1014245142	3300006176	Soil	QGLTVKAAGRQLSSKNDRPLHRLSEEIERERPEKGVRPPGRKKARKR*
Ga0066660_110868791	3300006800	Soil	PASGTTFKEAIYTGQGLTASAMGRQFSSAHDRPLHNLSDKVEREVPEKGKIPPLRRKSRQ
Ga0075434_1005665791	3300006871	Populus Rhizosphere	GLTVAADGAVLSSAGDKPLHKLSDKIEKESPEKGFVPPSKRSAKRSQK*
Ga0102924_11307021	3300007982	Iron-Sulfur Acid Spring	TFSEAIYTGQGLTATAASRQLSSAKDKPLHSLSDPIEKERPERGGMPPLRRRNSRSAK*
Ga0066793_103453951	3300009029	Prmafrost Soil	TGQGLTVTAAGRQLSSAGDKPRHKLSDKIEKERPEKGVIPPSRRRSRRSAK*
Ga0116105_10229422	3300009624	Peatland	AMNTAQGLTVPEAGPQLSSAGDKPLHHLSDPIEKERPERGIPPSKRAAKRSSK*
Ga0116105_10543752	3300009624	Peatland	AQSLTVAENGPQLSSAGDKPLHRLSDPIEREQPEKGVVPPSKKAERNAK*
Ga0116135_10565361	3300009665	Peatland	STYSEAIYTGQGLTVTAAGQQLSSAGDKPLHKLSDPIEQERPEKGVIPPSRRGAKRGAK*
Ga0116130_12548642	3300009762	Peatland	SGSSYSEAIYTGQGLTVTAAGRRLSAAGDKPLHKLSDKIEQERPEKGGIPPSRSGRQRRTK*
Ga0116223_100540974	3300009839	Peatlands Soil	GSTFNEAMYTAQGLKVPEAGPQLSSAGDKPLHKLSDPIEKESPEKGVVPPSKRAAKRSSK
Ga0126373_119629312	3300010048	Tropical Forest Soil	GLTVPTEGAVLSSAGDKPLHKLSDKIEKEHPEKGVIPPGKRISKRSQK*
Ga0126370_117480801	3300010358	Tropical Forest Soil	MYTGKGLTVAASGRQLSSAHDRPLHKLSDKVEQEIPEKGVTPPQRRKARQSVK*
Ga0126378_129464442	3300010361	Tropical Forest Soil	EAIYTGKGLRVKASGKQLSSAHDRPLHRLSDKIEREMPEKGMVPPERRRARRSTR*
Ga0126377_113233212	3300010362	Tropical Forest Soil	VKSGSTFNEAMYTAQGLTVPTEGAALSSAGDKPLHKLSDKIEKEHPEKGVIPPGKRISKRSQK*
Ga0126383_110936872	3300010398	Tropical Forest Soil	FNEGMYTAQGLTVPAEGAALSSGGDKPLHKLSDKIEKEHPEKGVIPPGKRMSKRSQK*
Ga0150983_137249732	3300011120	Forest Soil	GTTFNEAIYTAQGLSVTSAGRQLSSAGDKPLHKLSDQIERENPEKKPPLSSHTLQVRK*
Ga0150984_1076596651	3300012469	Avena Fatua Rhizosphere	SEAMYTGQGLTASASGRQISSANDRPLHNVSDKIEREIPEKGRVPPNRRAKRNAK*
Ga0137404_121959061	3300012929	Vadose Zone Soil	AQGLRVAVAGPQLSSAGDKPLHKLSDVLEKERPEKGVIPPSQRKARRSAK*
Ga0137407_113937561	3300012930	Vadose Zone Soil	NSGAMFSEAIYTGQGLTVTAAGRQFSSAKDRPLHKLSDKIERERPEKGAIPPLRRRAKRKVR*
Ga0157373_102528191	3300013100	Corn Rhizosphere	AQPSSGSTFKEAIYTAKGLTVTASGHQLSSAHDRPLHHLSDKIEREAPEKGRIPPNRRWARRSAKH*
Ga0181532_104810342	3300014164	Bog	TYTAQGLTVTAAGRQLSSAGDKPLHKLTDRVERERPEKGVIPPARRRSKRKAQ*
Ga0187818_104250502	3300017823	Freshwater Sediment	AIYTAKGLTANAAGRQLSSANDRPLHKLSDAIEKESPEKGRNPPNRRARRRLK
Ga0187847_102041141	3300017948	Peatland	TFNEAMFTAQGLSVPTRGAQLSSAGDKPLHHLSDKIEKELPERGIVPPSRKAVKK
Ga0187817_103822623	3300017955	Freshwater Sediment	TFNEAIYTGQGLTVKASGLQLSSAHDKPLHNLSDKIEKEVPEKGIKPPQRRGAKRSAK
Ga0187817_110430401	3300017955	Freshwater Sediment	QGLTVPEDGPQFSSAGDKPLHKLSDVIEKEHPEKGVIPPSKRAAKRSVK
Ga0187805_103639601	3300018007	Freshwater Sediment	AAANSGSTFNEAMYTAQGLTVPEDGPQFSSAGDKPLHKLSDVIEKEHPEKGVIPPSKRAAKRSVK
Ga0187859_100131001	3300018047	Peatland	AKSGSTFNEATYTAQGLTAPSKAGLQLSSAGDKPLHHLSDKIEKELPERGIVPPSRRAASSSK
Ga0187784_107274681	3300018062	Tropical Peatland	EAIYTAQGLTVTAAGRQRSSAGDKPLHKLSDKIEREAPEKGVIPPSKKSARRSSK
Ga0187784_112906871	3300018062	Tropical Peatland	EAIYTAQGLTVTAAGRQRSSAGDKPLHKLSDKIEREAPEKGVIPPSKKSAKRSAK
Ga0187772_108953311	3300018085	Tropical Peatland	AIYTAQGLTVAAAGRQLSSALDRPLHKLSDKIEREIPEKRVIPPEQRKARRSAK
Ga0187771_116809131	3300018088	Tropical Peatland	AQANSGSVFSEATYTAQGLTTAATQRQLSSALDRPLHKLSDKIEHERPEKGVIPPQKRRRAK
Ga0182025_10139071	3300019786	Permafrost	RTDYGLTVPEAGPQLSSAGDKPLHNLSDPIEREQPEKGIAPPSKKAKRRSK
Ga0193728_10007851	3300019890	Soil	NEAMFIAQSLNVPEAGADLSSAGDRPLHKLSDVIKKERPEKGTVPPSKRAKRSSK
Ga0210403_106505822	3300020580	Soil	ASSGTTYSEAIYTGQGLSVAAAGRQLSSAGDKPLHKLSDKIEQEPPEKGVIPPSRRSRQRLGK
Ga0210399_112621721	3300020581	Soil	GQGLTVNAAGRQLSSAGDKPLHKLSDKIEKERPEKGVIPPSRRRRSAK
Ga0210406_111833402	3300021168	Soil	KSGTTYNESMYTAQGLTVPTDAPQFSSAGDKPLHNLSDKIEKERPEKGVIPPARRAKRSA
Ga0210389_106154082	3300021404	Soil	AQVNSGSTFNEAMYTGQGLTVKAAGRQLSSKNDRPLHRLSEEIERERPEKGVRPPMKKKAEKK
Ga0210383_115161682	3300021407	Soil	GTTFAEAIYTGQGLTVSAAGRQFSSASDKPLHRLTDKIEKEAPEKGVIPPLRRRRSAK
Ga0210394_101304873	3300021420	Soil	AAAKSGSTFNEAIYTAQGLTAAKVGLQLSSAGDKPLHHLSDPLGEELPERGIIPPSKRATRSSSK
Ga0210394_112612972	3300021420	Soil	FNESMFTAQGLTVPEDGPQFSSAGDKPLHKLSDVIEKERPEKGVMPPSKKAAKRSAK
Ga0210384_102798501	3300021432	Soil	NEAIYTAQGLTAAKVGPQLSSAGDKPLHHLSDPLGEELPERGIIPPSKRAARSSSK
Ga0210384_108654352	3300021432	Soil	TTFNEAMNTAQGLTVPETGPQLSSKGDKPLHKLSDVIEKEKPEKGVVPPSKRAAKRSSK
Ga0210390_108103171	3300021474	Soil	IYTGQGLTAQAAGRQLSSARDKPLHHLSDKIEKELPEKGVIPPSRRRRSKK
Ga0210402_110189832	3300021478	Soil	TFSEATYTAQGLTVTASGKQLSSAGDRPLHKLSDEIEKEKPEKGIRPPLKRRMVLRKK
Ga0242654_104490522	3300022726	Soil	STFNEAMYTAQGLTVPEDGPQFSSAGDKPLHNLSDPIEKEQPEKGVVPPSRKSARRSSK
Ga0224550_10414353	3300022873	Soil	FTAQGLTVPETGPQLSSAGDKPLHRLSDPIEKENPERGIPPSKRAAKRSSK
Ga0224545_10455252	3300022881	Soil	KEAMNMAQGLTVAEDGPQLSSKGDKPLHKLSDPIEKDSPEKGVPPSKRAARRSVK
Ga0224556_10459311	3300024295	Soil	VAAAKSGTTYDEAMYTAQGLKVAETGPQFSSAGDKPLHKLSDVIEKERPEKGVVPPSKRAAKRSSK
Ga0208935_10051351	3300025414	Peatland	TFNEATYTAQGLTAPSKAGLQLSSAGDKPLHHLSDKIEKELPERGIVPPSRRAASSSK
Ga0208935_10097142	3300025414	Peatland	AMNTAQGLTVPEAGPQLSSAGDKPLHHLSDPIEKERPERGIPPSKRAAKRSSK
Ga0207664_118227971	3300025929	Agricultural Soil	IYTAKGLSVTASARQLSSAHDKPLHNLSDKIEREVPEKGIIPPSQRRSRRSAK
Ga0207665_100784281	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	YTAQGLTVAADGAVLSSAGDKPLHKLSDKIEKESPEKGFVPPSKRSAKRSQK
Ga0207779_10188122	3300026928	Tropical Forest Soil	QGLTAPAEPAVLSSKGDKPLHKLSDKIEKEHPEKGVVPPGLRRSKK
Ga0208603_10404721	3300027109	Forest Soil	MYTAQGLTVAETGPQLSSAGDKPLHNLSDVIEKERPEKGVVPPSKRAAKRSAN
Ga0209219_11543922	3300027565	Forest Soil	GLSVMAAGRQLSSAGDKPLHKLSDKIEKERPERNVIPPSLRRSRRSAK
Ga0208042_11779521	3300027568	Peatlands Soil	FSEAIYTAQGLTVTAAGRQFSSANDLPVHKMSDPIERERPEKGVIPPRRKKSK
Ga0208044_10502072	3300027625	Peatlands Soil	AKSGTTFNEAMFTAQGLTVPAVGAVLSSAGDKPLHKLSDKIEKERPEKGVIPPSRRAARQSAK
Ga0208827_11342442	3300027641	Peatlands Soil	AIYTGQGLTAKAAGRQLSSAGDKPLHNVSDKIEKEIPEKGVIPPSRRRAKRSAK
Ga0209167_100825903	3300027867	Surface Soil	ATYTAQGLTVAEAGPQLSAAGDKPLHNLSDKIEKERPEKGITPPSKRARSAK
Ga0209169_101740871	3300027879	Soil	TGQGLTVKAAGRQLSSKNDRPLHKLSDEIEREHPEKGVRPPGRKKARKR
Ga0209526_108368061	3300028047	Forest Soil	SMYTAQGLTVPEDGPQFSSAGDKPLHKLSDVIEKERPEKGVMPPSKKAAKRSAK
Ga0302225_103550693	3300028780	Palsa	ATFTAQGLTVPETGPQLSSAGDKPLHRLSDPIEKENPERGIPPSKRAAKRSSK
Ga0302225_104442551	3300028780	Palsa	TSGSTFNESMYTAQGLTVEENGPQFSSVGDKPLHHLSDPIEREQPEKGVVPPSKRAKRNA
Ga0302197_103483112	3300028873	Bog	EAMYTAQGLTVPEAGPQLSSAGDKPLHKLSDPIEKESPEKGVTPPSKRAAKRSSK
Ga0308309_112787591	3300028906	Soil	YTGQGLTVKAAGRQLSSKNDRPLHKLSDEIEREHPEKGVRPPGRKKARKR
Ga0311368_100598734	3300029882	Palsa	KSGTTFSEATFTAQGLTVPETGPQLSSAGDKPLHRLSDPIEKENPERGIPPSKRAAKRSS
Ga0302143_10461191	3300029918	Bog	AGTKSGTKFNEAMYTAQGLTVPETGPQFSSAKDKPLHNLSDAIEKERPEKGVVPPSKRAAKKSAK
Ga0311340_110957431	3300029943	Palsa	QGLTVPEAGPQLSSAGDKPLHHLSDPIEKEQPEKGVVPPSKHAAKKSAK
Ga0302150_102531382	3300029956	Bog	NLKVAEDGPQFSSAGDKPLHKLTDAIEKEQPEKGIVPPSKKSAKRSAK
Ga0302304_101086423	3300029993	Palsa	AQGLTVPETGPQLSSAGDKPLHRLSDPIEKENPERGIPPSKRAAKRSSK
Ga0311339_104646881	3300029999	Palsa	MYTAQGLTAEEKGPQFSSVGDKPLHRLSDPIERDQPEKGILPPSKKAKRSVK
Ga0311372_124682111	3300030520	Palsa	YTAQGLTVEENGPQFSSVGDKPLHHLSDPIEREQPEKGVVPPSKRAKRNAK
Ga0311354_102024231	3300030618	Palsa	AAKSGTTFSEATFTAQGLTVPETGPQLSSAGDKPLHRLSDPIEKENPERGIPPSKRAAKRSSK
Ga0316363_102423732	3300030659	Peatlands Soil	QGLKVPEAGPQLSSAGDKPLHKLSDPIEKESPEKGVVPPSKRAAKRSSK
Ga0311345_108785332	3300030688	Bog	AKSGSTFSEAMYTAQGLTVPEAGPQLSSAGDKPLHKLSDPIEKESPEKGVTPPSKRAAKRSSK
Ga0265461_128959721	3300030743	Soil	AQGLTADEKGPQFSSAGDKPLHHLSDAIEREQPEKGLVPPSKSAKKSAK
Ga0265461_134358851	3300030743	Soil	MNTTQGLTVPETGPQSSSAGDKPLHKLSDVIEKERPEKGTVPPSKRATKRSSK
Ga0170824_1002717931	3300031231	Forest Soil	QGLTVSAAGRQLSSSRDKPLHKLSDQIEKERPEKGVIPPRRANRRRKKV
Ga0170824_1157814493	3300031231	Forest Soil	AISGTTYAEAIYTGQGLSVSAAGRQLSSAGDKPLHKLSDKIEKERPEKVVIPPSRRRSRRSAK
Ga0170824_1253558481	3300031231	Forest Soil	TFAEAIYTGQGLTVVAAGRQLSSAGDKPLHHLSDEQEKETPEKGVIPPLRRNRKSRSK
Ga0170820_131663383	3300031446	Forest Soil	AIYTGQGLTVVAAGRQLSSAGDKPLHHLSDEQEKETPEKGVIPPLRRNRKSRSK
Ga0170820_176116461	3300031446	Forest Soil	QGLTVTAAGRQFSSAGDKPLHKLSDKVEREVPEKGVKPPLRRRRARQRSSK
Ga0170818_1101415992	3300031474	Forest Soil	KEAIYTAKGLSVTASARQLSSAHDKPLHNLSDKIEREVPEKGIIPPSRRRARRSAK
Ga0310686_1038150351	3300031708	Soil	TAQGLTVPETDPQFSSVGDKPLHKLSDVIEKERPEKGIVPPSKRAAKKSAK
Ga0310686_1122858572	3300031708	Soil	SEATYTAQGLTVAEAGPQLSAAGDKPLHNLSDKIEKERPEKGITPPSKRAAKSSK
Ga0310686_1172069391	3300031708	Soil	TFKEAMYTAEGLTVRATGAVLSSAGDKPLHALSDKIEKERPEKGAIPPLRRAAKRSAK
Ga0307474_111813002	3300031718	Hardwood Forest Soil	STFNVAMYTGQGLTVKAAGRQLSSKGDRVLHKLSDEIERERPEKPPMRKKAKKK
Ga0318502_105177221	3300031747	Soil	AMYTAQGLMVTASGQQFSSAHDKPLHHLSDKVEREVPEKGVPPQRRRARK
Ga0307475_114419591	3300031754	Hardwood Forest Soil	AKSGKTYNEAMSTAQGLTVATADEAVLSSAGDKPLHHLSDPIEREQAEKGIHPPERKRSAKK
Ga0316035_1253742	3300031955	Soil	GLRVPETGPQSSSAGDKPLHKLSDVIEKERPEKGALPPSKRAAKRSSK
Ga0335078_101950172	3300032805	Soil	TYAEAIYTARGLSAAAAGKQLSSAADKPLHKLSDKIEEEVPEKRVIPPSRRRVRR
Ga0335081_101420851	3300032892	Soil	GGSAFNQAMYVGQALSVAAAGRQLSSAKDKPLHKLSDKIENERPEKGVIPPRKQRRRAAR
Ga0335081_123909241	3300032892	Soil	NESMYTAQGLTANETGPQFSSAGDKPLHQLSDPIEREQPEKGVAPPSKKAK
Ga0335081_125470222	3300032892	Soil	IYTAQGLAAAVSGRQLSSAGDKPRHKLSDKIEKEVPEKGVKPPLRRRAKRSAK
Ga0370483_0075175_864_1064	3300034124	Untreated Peat Soil	VAAAKSGSTFNESMYTAQGLTVPEIGPQLSSAGDKPLHKLSDPIEHERPEKGVVPPSKRSAKRSSK
Ga0370514_180144_45_203	3300034199	Untreated Peat Soil	MYTAQSLTVAENGPQFSSAGDKPLHRLSDPIEREQPEKGVVPPSKKAKSNAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084662

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences