Metagenome / Metatranscriptome Family F084736

Basic Information
Family ID	F084736
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	50 residues
Representative Sequence	WSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK
Number of Associated Samples	80
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	37.50 %
% of genes from short scaffolds (< 2000 bps)	35.71 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (98.214 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (39.286 % of family members)
Environment Ontology (ENVO)	Unclassified (70.536 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (80.357 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 44.00% Coil/Unstructured: 56.00%
Feature Viewer

Powered by Feature Viewer

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
All Organisms	root	All Organisms	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Viruses	superkingdom	All Organisms → Viruses	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10242866	Not Available	572	Open in IMG/M
3300001472\|JGI24004J15324_10135353	Not Available	586	Open in IMG/M
3300001748\|JGI11772J19994_1026414	Not Available	794	Open in IMG/M
3300006026\|Ga0075478_10085077	Not Available	1016	Open in IMG/M
3300006164\|Ga0075441_10022369	Not Available	2603	Open in IMG/M
3300006802\|Ga0070749_10412740	Not Available	744	Open in IMG/M
3300006802\|Ga0070749_10497488	Not Available	664	Open in IMG/M
3300006802\|Ga0070749_10567749	Not Available	614	Open in IMG/M
3300006802\|Ga0070749_10631143	Not Available	576	Open in IMG/M
3300006802\|Ga0070749_10649863	Not Available	566	Open in IMG/M
3300006916\|Ga0070750_10281985	Not Available	714	Open in IMG/M
3300006916\|Ga0070750_10332500	Not Available	644	Open in IMG/M
3300007234\|Ga0075460_10219619	Not Available	641	Open in IMG/M
3300007538\|Ga0099851_1214615	Not Available	697	Open in IMG/M
3300007540\|Ga0099847_1114499	Not Available	815	Open in IMG/M
3300007540\|Ga0099847_1160777	Not Available	665	Open in IMG/M
3300009001\|Ga0102963_1299908	Not Available	632	Open in IMG/M
3300009001\|Ga0102963_1373953	Not Available	559	Open in IMG/M
3300009124\|Ga0118687_10308925	Not Available	597	Open in IMG/M
3300009428\|Ga0114915_1095052	Not Available	893	Open in IMG/M
3300009428\|Ga0114915_1177399	Not Available	594	Open in IMG/M
3300009438\|Ga0115559_1072810	Not Available	1400	Open in IMG/M
3300009785\|Ga0115001_10282308	Not Available	1057	Open in IMG/M
3300011128\|Ga0151669_137334	Not Available	598	Open in IMG/M
3300018080\|Ga0180433_10717477	Not Available	742	Open in IMG/M
3300018417\|Ga0181558_10407855	Not Available	720	Open in IMG/M
3300021335\|Ga0213867_1241579	Not Available	586	Open in IMG/M
3300021957\|Ga0222717_10528295	Not Available	631	Open in IMG/M
3300021958\|Ga0222718_10369830	Not Available	724	Open in IMG/M
3300022063\|Ga0212029_1001082	Not Available	2212	Open in IMG/M
3300022065\|Ga0212024_1018781	All Organisms → Viruses → Predicted Viral	1113	Open in IMG/M
3300022067\|Ga0196895_1017485	Not Available	791	Open in IMG/M
3300022068\|Ga0212021_1030951	Not Available	1044	Open in IMG/M
3300022187\|Ga0196899_1200271	Not Available	529	Open in IMG/M
3300025079\|Ga0207890_1048215	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	729	Open in IMG/M
3300025120\|Ga0209535_1129625	Not Available	839	Open in IMG/M
3300025137\|Ga0209336_10156220	Not Available	599	Open in IMG/M
3300025853\|Ga0208645_1177300	Not Available	779	Open in IMG/M
3300031519\|Ga0307488_10500003	Not Available	726	Open in IMG/M
3300031519\|Ga0307488_10673367	Not Available	589	Open in IMG/M
3300031676\|Ga0302136_1055373	Not Available	1364	Open in IMG/M
3300034374\|Ga0348335_113352	Not Available	821	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.21%
Terrestrial	Environmental → Terrestrial	1.79%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	91.96%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	4.46%
Soil	Environmental → Terrestrial → Soil	1.79%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	48.21%
Oceanic	Environmental → Aquatic → Marine → Oceanic	25.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.14%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.46%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.57%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.68%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.79%
Strait	Environmental → Aquatic → Marine → Strait	1.79%
Clay	Environmental → Terrestrial → Soil → Clay	1.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.89%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	48.21%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	20.54%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	7.14%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	5.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.89%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.89%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	39.29%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	17.86%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	7.14%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	5.36%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	3.57%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	2.68%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.68%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.68%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.79%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.79%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.79%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.79%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	1.79%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	1.79%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.79%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.89%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.89%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.89%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.89%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.89%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.89%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300001748	Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006165	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300007229	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300008218	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009124	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009428	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55	Environmental	Open in IMG/M
3300009438	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300011128	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018048	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018080	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018682	Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1	Environmental	Open in IMG/M
3300018876	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022065	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)	Environmental	Open in IMG/M
3300022067	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)	Environmental	Open in IMG/M
3300022068	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022925	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300024301	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504CT (spades assembly)	Environmental	Open in IMG/M
3300025079	Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)	Environmental	Open in IMG/M
3300025098	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025110	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025806	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025821	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 (SPAdes)	Environmental	Open in IMG/M
3300025853	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300026125	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300028115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (spades assembly)	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031622	Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m	Environmental	Open in IMG/M
3300031676	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_20m	Environmental	Open in IMG/M
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_101239431	3300000101	Marine	FWSNPDSTHSCHMWRMLKGVSVDRITVDSFEGETLNEFAQRTETILLGGSK*
DelMOSum2010_102428661	3300000101	Marine	HSCHLFRLKGGSVIDRVTVDSFENETLNDFIVRTETILLGGK*
DelMOWin2010_102541033	3300000117	Marine	NPDSTHSCHMWRMLKGVSVDRITVDSFEGETLNEFAQRTETILLGGSK*
JGI24006J15134_102328291	3300001450	Marine	LKGVSVDRITVDSFEGETLNEFAQRTETILLGGK*
JGI24004J15324_101353531	3300001472	Marine	FRMARGVVADRVTVDSWEGESLNEFAQRTESIILGGE*
JGI11772J19994_10264141	3300001748	Saline Water And Sediment	SCHLFRLKGGSVIDRVTVDSFEGETLNEFVARTETILIGGSK*
Ga0066223_10122252	3300004461	Marine	RAFWSNPDGTHSAHLFRLERNLVVDRVTVDSWEGESLDEFAQRTETIIQGGVK*
Ga0066223_10410154	3300004461	Marine	CHMWRMLKGVSVDRITVDSFEGETLNEFAQRTETILLGGSK*
Ga0075478_100850774	3300006026	Aqueous	IIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRVTVDSWEGEDLNQFALRTESIILGGVK*
Ga0075441_100223699	3300006164	Marine	HSCHMWRMLKGVSVDRITVDSFEGETLNEFAQRTETIINFDMGAR*
Ga0075443_102046463	3300006165	Marine	CHMWRMLKGVSVDRITVDSWEGETLNEFAQRTETILLGGSK*
Ga0075461_101459681	3300006637	Aqueous	IRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK*
Ga0098048_10915711	3300006752	Marine	SCHLFKMVRGEIIDRITVDSFEGETLNEFIQRTETILLGGK*
Ga0098055_13990942	3300006793	Marine	PDKSHSCHLFKMVRGEIIDRITVDSFEGETLNEFIQRTETILLGGK*
Ga0070749_104127401	3300006802	Aqueous	KGQIIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRVTVDSWEGEGLNEFALRTESIILGGVK*
Ga0070749_104974883	3300006802	Aqueous	HSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSR*
Ga0070749_105596953	3300006802	Aqueous	RRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGTK*
Ga0070749_105677493	3300006802	Aqueous	FWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK*
Ga0070749_106311433	3300006802	Aqueous	WSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK*
Ga0070749_106498632	3300006802	Aqueous	SCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGK*
Ga0070749_107646961	3300006802	Aqueous	DDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSSEGETLNEFIARTETILLGGK*
Ga0075476_101812403	3300006867	Aqueous	IQGDEYVVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRVTVDSWEGEDLNQFALRTESIILGGVK*
Ga0070750_102819853	3300006916	Aqueous	GSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK*
Ga0070750_103123133	3300006916	Aqueous	KGQIIQGDEYVVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK*
Ga0070750_103283013	3300006916	Aqueous	EYVVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRVTVDSWEGEDLNQFALRTESIILGGVK*
Ga0070750_103325003	3300006916	Aqueous	GIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGAK*
Ga0070750_104055011	3300006916	Aqueous	GDDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGK*
Ga0070746_103910093	3300006919	Aqueous	AFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEDLNQFVLRTESIILGGVK*
Ga0070748_11707724	3300006920	Aqueous	DKYEVDGIRRAFWSNPDSTHSCHMWRMLKGVSVDRITVDSWEGETLNEFAQRTETILLGGSK*
Ga0098041_11089003	3300006928	Marine	SFWSNPDKSHSCHLFKMVRGEIIDRITIDSFEGETLNEFIQRTETILLGGK*
Ga0075468_100769013	3300007229	Aqueous	MWRMLKGVSVDRITVDSFEGETLNEFAQRTETILLGGSK*
Ga0075460_102012611	3300007234	Aqueous	LFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK*
Ga0075460_102179761	3300007234	Aqueous	IRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGTK*
Ga0075460_102196191	3300007234	Aqueous	QGDDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVVDRVTVDSFENETLNDFIVRTETILLGGK*
Ga0070747_13067642	3300007276	Aqueous	VDGIRRAFWSNPDKTHSCHLFRLKGGSVVDRVTVDSFENETLNDFIVRTETILLGGK*
Ga0099851_12057721	3300007538	Aqueous	RRAFWSNPDGSHSCHLFRLVKGEVIDRITVDSWEGEGLNEFALRTESIILGGSK*
Ga0099851_12146151	3300007538	Aqueous	RRAFWSNPDGSHSCHLFRLVKGEVIDRITVDSWEGEGLNEFALRTESIILGGSR*
Ga0099847_11144993	3300007540	Aqueous	VKGQIIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGAK*
Ga0099847_11607773	3300007540	Aqueous	IVKGQIIQGDEYEVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSR*
Ga0075480_102871602	3300008012	Aqueous	GGSVIDRVTVDSFEGETLNEFIARTETILIGGKK*
Ga0075480_105068581	3300008012	Aqueous	KGQIIQGDDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGK*
Ga0114904_10934453	3300008218	Deep Ocean	FWSNPDKSHSCHLFKMVKGNIIDRITVDSFEGETLNEFIQRTETILLGGK*
Ga0102963_12999081	3300009001	Pond Water	NPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGVK*
Ga0102963_13739533	3300009001	Pond Water	VRGEVIDRITVDSWEGEGLNEFALRTESIILGGSR*
Ga0118687_103089253	3300009124	Sediment	CHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGVK*
Ga0114918_103045051	3300009149	Deep Subsurface	THSAHLFRLKRGEVVDRVTVDSWEGESLNQFALRTESIILGGVK*
Ga0114918_103976691	3300009149	Deep Subsurface	KTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGLK*
Ga0114918_105044501	3300009149	Deep Subsurface	DKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILLGGKK*
Ga0114918_105576771	3300009149	Deep Subsurface	KTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGKK*
Ga0114915_10950524	3300009428	Deep Ocean	LFRLERNLVVDRVTVDSWEGESLDEFAQRTETIIQGGVK*
Ga0114915_11773991	3300009428	Deep Ocean	HLFRLERNVVVDRVTVDSWEGETLDEFAQRTETIIQGGVK*
Ga0115559_10728101	3300009438	Pelagic Marine	HSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGK*
Ga0115001_102524201	3300009785	Marine	MLKGVSVDRITVDSWEGETLNEFAQRTETILLGGK*
Ga0115001_102823084	3300009785	Marine	VQGDKFEVEGIRRAFWSNPDGTHSAHLFRLERNLVVDRVTVDSWEGESLDEFAQRTETIIQGGVK*
Ga0098049_10976591	3300010149	Marine	TDKTHSCHLFRLKGGSVIDRVTVDSFENETLNDFIVRTETILIGGK*
Ga0129348_11785831	3300010296	Freshwater To Marine Saline Gradient	VDGIRRAFWSNPDGSHSCHLFRLVKGEVIDRITVDSWEGEGLNEFALRTESIILGGSK*
Ga0129345_12910863	3300010297	Freshwater To Marine Saline Gradient	HSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILLGGKK*
Ga0151669_1373342	3300011128	Marine	DGIRRAFWSNPDGSHSCHLFRLVKGEVIDRVTVDSWEGEDLNQFALRTESIILGGVK*
Ga0181385_11106843	3300017764	Seawater	RAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFENETLNDFIARTETILIGGK
Ga0181413_12648042	3300017765	Seawater	DDYEVDGVRRSFWSNPDKSHSCHLFKMVKGNIIDRITVDSFEGETLNEFIQRTETILLGG
Ga0181552_101443551	3300017824	Salt Marsh	KGQIIQGDDFEIDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGKK
Ga0181606_107225362	3300018048	Salt Marsh	AFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGK
Ga0180433_107174773	3300018080	Hypersaline Lake Sediment	DGSHSCHLFRLVRGEVIDRVTVDSWEGEGLNEFALRTESIILGGSR
Ga0181558_102298172	3300018417	Salt Marsh	QGDDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGKK
Ga0181558_104078551	3300018417	Salt Marsh	YEVDGIRRAFWSNPDGSHSCHLFRLVKGEVIDRVTVDSWEGEDLNQFALRTESIILGGAK
Ga0188851_10221413	3300018682	Freshwater Lake	VRGVVVDRVTADSWDGESLNQFAQRTETIILGGVK
Ga0181564_101296761	3300018876	Salt Marsh	DGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGKK
Ga0213867_12415792	3300021335	Seawater	AFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFENETLNDFIVRTETILLGGK
Ga0222717_105282951	3300021957	Estuarine Water	KYEVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEDLKQFALRTESIILGGV
Ga0222718_103698301	3300021958	Estuarine Water	WSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSR
Ga0222719_106330713	3300021964	Estuarine Water	PDGSHSCHLFRLVKGEVIDRITVDSWEGEGLNEFALRTESIILGGSR
Ga0212029_10010821	3300022063	Aqueous	NPDGSHSCHLFRLVKGEVIDRITVDSWEGEGLNEFALRTESIILGGSR
Ga0212024_10187814	3300022065	Aqueous	SCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK
Ga0196895_10174851	3300022067	Aqueous	EYAVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRVTVDSWEGEDLNQFALRTESIILGGV
Ga0212021_10309511	3300022068	Aqueous	AKGEVIDRVTVDSWEGEDLNQFALRTESIILGGVK
Ga0196899_12002711	3300022187	Aqueous	GSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK
Ga0196901_11670531	3300022200	Aqueous	IRRAFWSNPDGSHSCHLFRLVKGEVIDRITVDSWEGEGLNEFALRTESIILGGSK
Ga0196901_11735011	3300022200	Aqueous	IRRAFWSNPDGSHSCHLFRLVKGEVIDRITVDSWEGEGLNEFALRTESIILGGSR
Ga0255773_101433073	3300022925	Salt Marsh	KGGSVIDRVTVDSFEGETLNEFIARTETILIGGKK
Ga0210003_12861391	3300024262	Deep Subsurface	SCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGKK
Ga0210003_13102491	3300024262	Deep Subsurface	LKGGSVIDRVTVDSFEGETLNEFIARTETILIGGLK
Ga0233451_100322451	3300024301	Salt Marsh	GDEYVVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGAK
Ga0207890_10482151	3300025079	Marine	CHMWRMLKGVSVDRITVDSWEGETLNEFAQRTETILLGGSK
Ga0208434_10823611	3300025098	Marine	DQIIQGDDYVVDGVRRSFWSNPDKSHSCHLFKMVRGEIIDRITVDSFEGETLNEFIQRTETILLGGK
Ga0208793_10397731	3300025108	Marine	SNPDGSHSCHLFRLAKGEVIDRVTVDSWEGEDLNQFALRTESIILGGAK
Ga0208158_10979083	3300025110	Marine	HSCHLFKMVRGEIIDRITVDSFEGETLNEFIQRTETILLGGK
Ga0209535_11296254	3300025120	Marine	AFWSNPDGSHSCHLFRMARGVVADRVTVDSWEGESLNEFAQRTESIILGGA
Ga0209336_101562201	3300025137	Marine	SHSCHLFRMARGVVADRVTVDSWEGESLNEFAQRTESIILGGE
Ga0209336_101600101	3300025137	Marine	SHSCHLFRMARGVVADRVTVDSWEGESLNEFAQRTESIILGGA
Ga0209634_12266331	3300025138	Marine	HLFRMARGVVADRVTVDSWEGESLNEFAQRTESIILGGA
Ga0209634_12394501	3300025138	Marine	QGDKYEVDGIRRAFWSNPDSTHSCHMWRMLKGVSVDRITVDSFEGETLNEFAQRTETILLGGK
Ga0209337_11307181	3300025168	Marine	SAHLFRLERNLVVDRVTVDSWEGESLDEFAQRTETIIQGGVK
Ga0208160_11084613	3300025647	Aqueous	WSNPDGSHSCHLFRLAKGEVIDRVTVDSWEGEDLNQFALRTESIILGGVK
Ga0208899_11710281	3300025759	Aqueous	DGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGAK
Ga0208767_10115229	3300025769	Aqueous	DGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGSK
Ga0208767_11868643	3300025769	Aqueous	NPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGTK
Ga0208545_10929543	3300025806	Aqueous	LFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGK
Ga0209600_11821881	3300025821	Pelagic Marine	IQGDDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILLGGK
Ga0208645_11773003	3300025853	Aqueous	HSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGAK
Ga0208644_11899913	3300025889	Aqueous	QIIQGDEYVVDGIRRAFWSNPDGSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGAK
Ga0209962_10842582	3300026125	Water	LKGGSIIDRVTVDSFEGETLNEFIARTETILLRGK
Ga0233450_101725602	3300028115	Salt Marsh	GQIIQGDDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGKK
Ga0307488_102489791	3300031519	Sackhole Brine	LERNLVVDRVTVDSWEGESLDEFAQRTETIIQGGVK
Ga0307488_104002761	3300031519	Sackhole Brine	RAFWSNPDGSHSCHLFRMARGVVADRVTVDSWEGESLNEFAQRTESIILGGE
Ga0307488_105000031	3300031519	Sackhole Brine	NPDGTHSAHLFRLKRGEVVDRVTVDSWEGESLNQFSLRTESIILGGVK
Ga0307488_106733671	3300031519	Sackhole Brine	KRGEVVDRITVDSWEGESLNQFALRTESIILGGVK
Ga0307379_105192161	3300031565	Soil	LFRLKRGEVIDRVTVDSWEGESLNQFALRTESIILGGVK
Ga0307376_104866441	3300031578	Soil	PDGTHSAHLFRLKKGEVVDRVTVDSWEGESLNQFALRTESIILGGAK
Ga0302126_100603131	3300031622	Marine	FWSNPDGSHSCHLFRMARGVVADRVTVDSWEGESLNEFAQRTESIILGGA
Ga0302136_10553734	3300031676	Marine	DVRRAFWSNPDGTHSAHLFRLERNLVVDRVTVDSWEGESLDEFAQRTETIIQGGVK
Ga0348335_113352_684_821	3300034374	Aqueous	GSHSCHLFRLVRGEVIDRITVDSWEGEGLNEFALRTESIILGGAK
Ga0348337_108116_2_115	3300034418	Aqueous	RLKRGEVIDRVTVDSWEGESLNQFSLRTESIILGGEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084736

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign