Metagenome Family F084768

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084768
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	71 residues
Representative Sequence	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Number of Associated Samples	94
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.18 %
% of genes near scaffold ends (potentially truncated)	26.79 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.286 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.750 % of family members)
Environment Ontology (ENVO)	Unclassified (20.536 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.929 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01425	Amidase	48.21
PF13714	PEP_mutase	41.07
PF13030	DUF3891	1.79
PF10518	TAT_signal	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	48.21

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.29 %
Unclassified	root	N/A	10.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.29 %
Unclassified	root	N/A	10.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.29 %
Unclassified	root	N/A	10.71 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.43 %
Unclassified	root	N/A	10.71 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.25 %
Unclassified	root	N/A	10.71 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	10.71 %
Unclassified	root	N/A	10.71 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	10.71 %
Unclassified	root	N/A	10.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.57 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.89 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	10.71 %
Unclassified	root	N/A	10.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.57 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.89 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	0.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	10.71 %
Unclassified	root	N/A	10.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.57 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.89 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	10.71 %
Unclassified	root	N/A	10.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.57 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.89 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	10.71 %
Unclassified	root	N/A	10.71 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.57 %
Rhizobium sp. CF122	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF122	0.89 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10080192	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300003505\|JGIcombinedJ51221_10024432	All Organisms → cellular organisms → Bacteria	2150	Open in IMG/M
3300004092\|Ga0062389_102313470	Not Available	709	Open in IMG/M
3300004092\|Ga0062389_103342808	Not Available	601	Open in IMG/M
3300004152\|Ga0062386_100898513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	732	Open in IMG/M
3300005332\|Ga0066388_100407796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2004	Open in IMG/M
3300005332\|Ga0066388_103685113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	782	Open in IMG/M
3300005332\|Ga0066388_108188715	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005436\|Ga0070713_100421252	Not Available	1250	Open in IMG/M
3300005457\|Ga0070662_101134099	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300005610\|Ga0070763_10042859	All Organisms → cellular organisms → Bacteria	2124	Open in IMG/M
3300005764\|Ga0066903_102311852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1038	Open in IMG/M
3300005764\|Ga0066903_102742121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	956	Open in IMG/M
3300005764\|Ga0066903_103027166	All Organisms → cellular organisms → Bacteria → Proteobacteria	910	Open in IMG/M
3300006050\|Ga0075028_100360484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	823	Open in IMG/M
3300006052\|Ga0075029_100080270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1931	Open in IMG/M
3300006059\|Ga0075017_100103657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1983	Open in IMG/M
3300006162\|Ga0075030_100280484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1334	Open in IMG/M
3300006163\|Ga0070715_10602527	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300006172\|Ga0075018_10100805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1280	Open in IMG/M
3300006174\|Ga0075014_100797230	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300006854\|Ga0075425_102084213	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300009525\|Ga0116220_10297137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	710	Open in IMG/M
3300009545\|Ga0105237_11748166	Not Available	629	Open in IMG/M
3300009698\|Ga0116216_10298624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	982	Open in IMG/M
3300010359\|Ga0126376_11947012	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300010373\|Ga0134128_10872353	All Organisms → cellular organisms → Bacteria → Proteobacteria	996	Open in IMG/M
3300010373\|Ga0134128_12447171	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300010375\|Ga0105239_10973591	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300010376\|Ga0126381_100863950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1301	Open in IMG/M
3300010376\|Ga0126381_101558362	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300010376\|Ga0126381_102911591	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300010379\|Ga0136449_100499295	All Organisms → cellular organisms → Bacteria	2113	Open in IMG/M
3300010379\|Ga0136449_102164246	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300010396\|Ga0134126_10436548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1516	Open in IMG/M
3300010398\|Ga0126383_12191624	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300012180\|Ga0153974_1142442	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012181\|Ga0153922_1147620	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300012957\|Ga0164303_10381022	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300012958\|Ga0164299_10447878	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300012985\|Ga0164308_11664715	Not Available	591	Open in IMG/M
3300012989\|Ga0164305_10202251	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M
3300014162\|Ga0181538_10629731	Not Available	558	Open in IMG/M
3300015371\|Ga0132258_11726793	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300015371\|Ga0132258_13638788	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300015372\|Ga0132256_101106277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300015373\|Ga0132257_101161730	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300015374\|Ga0132255_104325320	Not Available	602	Open in IMG/M
3300016270\|Ga0182036_10793977	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300016294\|Ga0182041_10371347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1208	Open in IMG/M
3300016319\|Ga0182033_10146916	All Organisms → cellular organisms → Bacteria	1814	Open in IMG/M
3300016319\|Ga0182033_10557520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	991	Open in IMG/M
3300016357\|Ga0182032_11794594	Not Available	536	Open in IMG/M
3300016387\|Ga0182040_11822386	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300016404\|Ga0182037_10977842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	737	Open in IMG/M
3300017822\|Ga0187802_10019856	All Organisms → cellular organisms → Bacteria → Proteobacteria	2299	Open in IMG/M
3300017822\|Ga0187802_10258255	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300017943\|Ga0187819_10761969	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300017970\|Ga0187783_10160041	All Organisms → cellular organisms → Bacteria → Proteobacteria	1659	Open in IMG/M
3300017970\|Ga0187783_10239239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1329	Open in IMG/M
3300017970\|Ga0187783_11100730	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300017972\|Ga0187781_10010760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6574	Open in IMG/M
3300017972\|Ga0187781_10049883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2880	Open in IMG/M
3300017972\|Ga0187781_11193392	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300017973\|Ga0187780_10515889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	854	Open in IMG/M
3300017975\|Ga0187782_10417085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1021	Open in IMG/M
3300017993\|Ga0187823_10237470	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300018001\|Ga0187815_10309906	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300018007\|Ga0187805_10161984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300018060\|Ga0187765_10058449	All Organisms → cellular organisms → Bacteria → Proteobacteria	2005	Open in IMG/M
3300018062\|Ga0187784_10031748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4267	Open in IMG/M
3300020580\|Ga0210403_10039320	All Organisms → cellular organisms → Bacteria → Proteobacteria	3782	Open in IMG/M
3300020583\|Ga0210401_10149755	All Organisms → cellular organisms → Bacteria	2182	Open in IMG/M
3300021088\|Ga0210404_10154236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300021180\|Ga0210396_10137733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2198	Open in IMG/M
3300021180\|Ga0210396_11403163	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300021401\|Ga0210393_10238914	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300021402\|Ga0210385_10628710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	820	Open in IMG/M
3300021403\|Ga0210397_10280966	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300021405\|Ga0210387_10248652	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300021433\|Ga0210391_10430529	All Organisms → cellular organisms → Bacteria → Proteobacteria	1036	Open in IMG/M
3300021559\|Ga0210409_10570391	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300021560\|Ga0126371_10329709	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300025906\|Ga0207699_10675121	Not Available	755	Open in IMG/M
3300025933\|Ga0207706_11270249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF122	609	Open in IMG/M
3300027895\|Ga0209624_10391984	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300027898\|Ga0209067_10439365	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300027908\|Ga0209006_11261543	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300027911\|Ga0209698_10203765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1599	Open in IMG/M
3300031170\|Ga0307498_10173614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	733	Open in IMG/M
3300031543\|Ga0318516_10466296	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
3300031573\|Ga0310915_10829538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	650	Open in IMG/M
3300031718\|Ga0307474_10639060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	840	Open in IMG/M
3300031754\|Ga0307475_11065536	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031771\|Ga0318546_11036233	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031823\|Ga0307478_11611437	Not Available	536	Open in IMG/M
3300031846\|Ga0318512_10254853	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300031879\|Ga0306919_11083931	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300031890\|Ga0306925_11012296	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300031897\|Ga0318520_10875513	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300031912\|Ga0306921_11231136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	832	Open in IMG/M
3300031941\|Ga0310912_10301297	All Organisms → cellular organisms → Bacteria → Proteobacteria	1241	Open in IMG/M
3300031947\|Ga0310909_10964515	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300031981\|Ga0318531_10197758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	906	Open in IMG/M
3300032041\|Ga0318549_10264687	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300032160\|Ga0311301_10678018	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300032261\|Ga0306920_102000633	Not Available	812	Open in IMG/M
3300032261\|Ga0306920_102831558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	660	Open in IMG/M
3300032895\|Ga0335074_10844399	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300032955\|Ga0335076_10160189	All Organisms → cellular organisms → Bacteria → Proteobacteria	2164	Open in IMG/M
3300033289\|Ga0310914_10764485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	864	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.29%
Host-Associated	Host-Associated	10.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.21%
Aquatic	Environmental → Aquatic	16.07%
Plants	Host-Associated → Plants	8.93%
Fungi	Host-Associated → Fungi	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.21%
Freshwater	Environmental → Aquatic → Freshwater	8.93%
Sediment	Environmental → Aquatic → Sediment	7.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.57%
Mycelium	Host-Associated → Fungi → Mycelium	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.14%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.61%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.14%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.46%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.57%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.79%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100801921	3300001867	Forest Soil	MSAADDKELGEAALAELLASSGVAVAQEEIAPVARSLERINAAARALLRPAFDDTLEAYYRLLEQD
JGIcombinedJ51221_100244322	3300003505	Forest Soil	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA*
Ga0062389_1023134702	3300004092	Bog Forest Soil	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRINVAARTLLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0062389_1033428081	3300004092	Bog Forest Soil	DNDIGEAALAELIASNSVAASQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0062386_1008985131	3300004152	Bog Forest Soil	MSAAGDNDIGEAALAELVASNGVAVSQEEVAPVAGALKRINAAARILLRPSFDDSVEAYYRLLEQDGAGADA*
Ga0066388_1004077962	3300005332	Tropical Forest Soil	MSAMGDKDLGEAALAELLTSSGIAVAPDEIAPVARALERINAAARSLLRPSFDDTLEAYYRLLEQDGTGADA*
Ga0066388_1036851132	3300005332	Tropical Forest Soil	QFFSDGDGGMSVTEDGISEAALADVFASSGVKVEAEEIRPVVRALVRIDAAARVLLRPSFDDTVEAYFRLLEQDDAGADA*
Ga0066388_1081887152	3300005332	Tropical Forest Soil	MSAVGDKELGEAALAELLASSGVAVAQEEIAPVARSLERINAAARALLPPSFDDTLEAYYRLLEQDGTGAAA*
Ga0070713_1004212521	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSAADDKELGEAALAELLASSGVAVAQEEIAPVARSLERINAAARALLRPAFDDTLEAYYRLLEQDGTGADA*
Ga0070662_1011340992	3300005457	Corn Rhizosphere	MNAGDKDLDEAVLAELFANSGVSVEQEEIASVARALTRINAAARVLLRPSFDDTVEAYYRLLEQDGVGADA*
Ga0070763_100428593	3300005610	Soil	MSAAGDNDIGEAALAELIASSGVAISQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA*
Ga0066903_1023118522	3300005764	Tropical Forest Soil	MSVTEDGISEAALADVFASSGVKVEAEEIPPVVRALVRINAAARVLLRPSFDDTVEAYFRLLEQDDAGADA*
Ga0066903_1027421211	3300005764	Tropical Forest Soil	QAFANVLRIQSKCATHSNLCTVLGRGDRGMSAVGDKDLGEAALAELLASSGVAVAQEEIAPVARALARINAAARILLRPSFDDAVEAYFRLLEQDDAGAGA*
Ga0066903_1030271662	3300005764	Tropical Forest Soil	MSAVGDKELGEAALAELLASSGVAVAQEEIAPVARSLERINAAARALLQPSFDDTLEAYYRLLEQDGTGAEA*
Ga0075028_1003604842	3300006050	Watersheds	GEAALAELMASSGVAVSQEEVAPVAGALKRFNAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0075029_1000802702	3300006052	Watersheds	MSAAGDNDIGEAALAELVASNGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0075017_1001036573	3300006059	Watersheds	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0075030_1002804842	3300006162	Watersheds	MSAAGDNDIGEAALAELIASNSVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0070715_106025271	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	DRRMSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA*
Ga0075018_101008052	3300006172	Watersheds	MSAAGDNDVGEAALAELIASNGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0075014_1007972302	3300006174	Watersheds	MSAAGDNDIGEAALAELIAGSGVAISQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0075425_1020842131	3300006854	Populus Rhizosphere	MNAGDKDLDEAVLAELFANSGVSVEQEEIAPVARALTRINAAARVLLRPSFDDTVEAYYRLLEQDGVGADA*
Ga0116220_102971372	3300009525	Peatlands Soil	MSAAGDNDVGEATLAELIASNGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0105237_117481662	3300009545	Corn Rhizosphere	MSAVGDKEPGEAALAELLASSGVAVAQEEIAPVGRSLERINAAGRALLRPSFDDTLEAYYRLLEQDGTGADA*
Ga0116216_102986242	3300009698	Peatlands Soil	MSAAGDNDVGEATLAELIASNGVAVSQEEVAPVASALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA*
Ga0126376_119470121	3300010359	Tropical Forest Soil	MSVTEDGISEAALADVFASSGVKVEAEEIRPVVRALVRIDAAARVLLRPSFDDTVEAYFRLLEQDDAGADA*
Ga0134128_108723531	3300010373	Terrestrial Soil	IQIQVQFLGGDDAMSVVGDKDLGEAVLAELVANSGVAVAQEEIAPVARTLERINAAARALLRPSFDGTLEAYYRLLEQDGTGAEA*
Ga0134128_124471712	3300010373	Terrestrial Soil	MSAVGDKDLGEVALAELVASSGVAVAQEEIAPVARTLERINAAARALLRPSFDDTLEAYYRLLEQDGAGADA*
Ga0105239_109735911	3300010375	Corn Rhizosphere	EAVLAELFANSGVSVEQEEIASVARALTRINAAARVLLRPSFDDTVEAYYRLLEQDGVGADA*
Ga0126381_1008639502	3300010376	Tropical Forest Soil	MSVTEDGISEAALADLFASSGVKVEAEEIRPVVRALVRINAAARVLLRPSFDETVEAYFRLLEQDDAGADA*
Ga0126381_1015583622	3300010376	Tropical Forest Soil	MSAMRDKDLGEAALAELLTSSGVAVAPDEIAPVARALERINAAARSLPRPSFDDTLEAYYRLLDQDGTGADA*
Ga0126381_1029115912	3300010376	Tropical Forest Soil	MSGAGDEDLGEAALAELLASSGVAVAQEEIAPVARALARINAAARILLRPSFDDAVEAYFRLLEQDDAGAGA*
Ga0136449_1004992952	3300010379	Peatlands Soil	MSEPGDGGIGEAALADVLASSSVSVEAEEIGSIVGALARINTAARLLLRPSFDDTSEAYYRLLEQDGAGADA*
Ga0136449_1021642461	3300010379	Peatlands Soil	MSAAGDNDIGDAALAELIASSGVAVSQEEVAPVAGALKRINAAARILLRPSFDDSVEAY
Ga0134126_104365482	3300010396	Terrestrial Soil	MSVVGDKDLGEAVLAELVANSGVAVAQEEIAPVARTLERINAAARALLRPSFDDTLEAYYRLLEQDGTGADA*
Ga0126383_121916242	3300010398	Tropical Forest Soil	MSVTEDGISEAALADVFASSGVKVEAEEIPPVVRALVRINAAARVLLRPSFDDTVETYFRLLEQDDAGADA*
Ga0153974_11424422	3300012180	Attine Ant Fungus Gardens	MSEAGDEDLGEAALAELLARSGVAVAQPEIAPVARTLARINAAAHTLLRPSFDDTVEAYFRLLE
Ga0153922_11476201	3300012181	Attine Ant Fungus Gardens	MSAADDKELSETSLAELLASSGVAVTQDEMVPVARTLERINAAARLLLRPSFDDTVEAYCRL
Ga0164303_103810221	3300012957	Soil	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAY
Ga0164299_104478781	3300012958	Soil	RGMSAAADNDIGEAALAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRRLEQDGVGAGA*
Ga0164308_116647151	3300012985	Soil	MSAAGDNDIGEAALAELIAGSGVAISQEEVAPVAGALRRINAAARILSRPSF
Ga0164305_102022512	3300012989	Soil	GEAALAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA*
Ga0181538_106297312	3300014162	Bog	MSAAGDNDVGEATLAELIASNGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGAGA*
Ga0132258_117267932	3300015371	Arabidopsis Rhizosphere	MSAADDKELGEAALAELLASSGVAVAQEEIAPVARSLERINAAARALLRPSFDDTLEAYYRVLEQDGTGADA*
Ga0132258_136387882	3300015371	Arabidopsis Rhizosphere	MSAVGDKDLGEVALTELLTSSGVAVVQEEIAPVARTLERINAAARALLRPSFDDTVEAYYRLLEQDGTGADA*
Ga0132256_1011062772	3300015372	Arabidopsis Rhizosphere	MSAAGDKELGEAALAELLASSGVAVAQEEIAPVARSLERINAAARALLRPSFDDTLEAYYRVLEQDGTGADA*
Ga0132257_1011617302	3300015373	Arabidopsis Rhizosphere	MSAVVDKEPGEAALTELLASSGVAVAQEEIAPVARSLERINAAARALLRPSFDDTLEAYYRLLE
Ga0132255_1043253202	3300015374	Arabidopsis Rhizosphere	MSAVGDKDLGEVALTELLTSSGVAVVQEEIAPVARTLERINAAARALLRPSFDDTLEAYYRVLEQDGTGADA*
Ga0182036_107939772	3300016270	Soil	MSVTEDGVSEAALADVFASSGVKVEAEEIRPVVRALVRINAAARVAPRPSFDDTVEAYFRLLEQDDAGADA
Ga0182041_103713472	3300016294	Soil	MGVTEDGISEAALADVLASSGVKVGVEEIPPVVRALVRINAAARVLLRPSFDDAVEAYFRLLEQDDAGADA
Ga0182033_101469162	3300016319	Soil	MSAMGDKDLGEAALAELLTSSGIAVAPDEIAPVARALERINAAARSLLRPSFDDTLEAYYRLLEQDGTGADA
Ga0182033_105575201	3300016319	Soil	DGISEAALADVFASSGVKVGVEEIPPVVRALVRINAAARVLLRPSFDDAVEAYFRLLEQDDAGADA
Ga0182032_117945942	3300016357	Soil	MGVTEDGISEAALADVFASSGVKVEAEEIRPVVRALVRINAAARVAPRPSFDDTVEAYFRLLEQDDAGADA
Ga0182040_118223862	3300016387	Soil	CTVFGGGDGGMGVTEDGISEAALADVFASSGVKVGVEEIPPVVRALVRINAAARVLLRPSFDDAVEAYFRLLEQDDAGADA
Ga0182037_109778422	3300016404	Soil	MSAMGNKDLGEAALAELLTSSGVAVAPDEIAPVARALERINAAARSLPRPSFDDTLEAYYRLLDQDGTGADA
Ga0187802_100198563	3300017822	Freshwater Sediment	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRINVAARTLLRPSFDDTVEAYYRLLEQDGAGADA
Ga0187802_102582552	3300017822	Freshwater Sediment	MSEPGDDGIGEAALAGVLASSGVRVTAEEIGPVVAALARINTAARLLLRPSFDDTSEAYYRLLEQDGAGADA
Ga0187819_107619692	3300017943	Freshwater Sediment	GMSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRINVAARTLLRPSFDDTVEAYYRLLEQDGAGADA
Ga0187783_101600412	3300017970	Tropical Peatland	VAANEISESALADVFASSGVKVEAEEIGPVVRALVRVNAAARVLLRPSFDDTVESYFRLLEQDEAGAGA
Ga0187783_102392392	3300017970	Tropical Peatland	MSAVEDEISEAALADVFASGGVKVEADEIGPVVRALVRIDAAARVLLHSSFDDTVESYFRLIEQDDAGAGA
Ga0187783_111007302	3300017970	Tropical Peatland	MSVDDKELGETSLAELLASSGVAVTPDEMAPVARTLGRINAAARLLVRPSFDDTVEAYYRLLEQDGVGADA
Ga0187781_100107605	3300017972	Tropical Peatland	MSAADDEELSETALAELLTSSGVAVTQDEIAPIARTIARINAAARLLLRPSFDDTVEAYYRLLEQDGAGADA
Ga0187781_100498832	3300017972	Tropical Peatland	MSVAEDGISEAALADVFASSGVKVEAEEIGPVARVLVRINAAARVLPRPSFDDTTESYFRLLERDDAGAGA
Ga0187781_111933922	3300017972	Tropical Peatland	MSVDDKERGEASLAELLASSGVAVTQDEMAPVARTLGRINAAARLLVRPSFDDTVEAYYRLLEQDGVGADA
Ga0187780_105158892	3300017973	Tropical Peatland	MSVAENGISEAALADVFAGSGVEVELEEIGSVVRALARIDAAARVLLRLSFDETVESYFRLLEQDGAGAGA
Ga0187782_104170852	3300017975	Tropical Peatland	MSAADDEELSETALAELLTSSGVAVTQDEIAPIAPTLARINAAARLLLRPSFDDTVEAYYRLLEQDGAGADA
Ga0187823_102374702	3300017993	Freshwater Sediment	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0187815_103099062	3300018001	Freshwater Sediment	MSAAGDNDVVEATLAELIASNGVAVSQEEVAPVAGALKRINAAARVLLRPSFDDTVEAYYRLLEQDGAGADA
Ga0187805_101619842	3300018007	Freshwater Sediment	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRINAAARVLLRPSFDDTVEAYYRLLEQDGAGADA
Ga0187765_100584492	3300018060	Tropical Peatland	MSAADDKELGETSLAALLASSGVAVAQDEVASIARTLERIDAAARLLLRPSFDDTLEAYHRLLEQDGAGPDK
Ga0187784_100317486	3300018062	Tropical Peatland	MSAADDEELSETALAELLTSSGVAVTQDEIAPIARTLARINAAARLLLRPSFDDTVEAYYRLLEQDGAGADA
Ga0210403_100393202	3300020580	Soil	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA
Ga0210401_101497553	3300020583	Soil	MSAAGDNDVGEAALAELIASNGVAVSQEEAAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0210404_101542362	3300021088	Soil	MSAAGDNDIGEAALAELIASSGVAVSQEEVASVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA
Ga0210396_101377332	3300021180	Soil	MSAADDKELGETSLAELLASSGVAVAQDEMASIARTLERINAAARFLLRPSFDDTVEAYYRLLEQGGAGTDT
Ga0210396_114031631	3300021180	Soil	LCTVFGGGDRGMSAAGDNDIGEAALAELIAGSGVAVSQEEAAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA
Ga0210393_102389142	3300021401	Soil	MSAAGDNDIGEAALAELIASSGVAVSQEEAAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA
Ga0210385_106287101	3300021402	Soil	LAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA
Ga0210397_102809661	3300021403	Soil	NDIGEAALAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGVGAGA
Ga0210387_102486523	3300021405	Soil	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRIDAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0210391_104305292	3300021433	Soil	MSAAGDNDIGEAALAELIASNSVAVSQEEVAPVAGALKRIKAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0210409_105703911	3300021559	Soil	MSAAGDNDIGEAALAELIASNSVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0126371_103297092	3300021560	Tropical Forest Soil	MSAMGDKDLGEAALAELLTSSGIAVAPDEIAPVARALERINAAARSLLRPSFDDTLEAYYRLLEQDGTGAEA
Ga0207699_106751211	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSAADDKELGEAALAELLASSGVAVAQEEIAPVARTLERINAAARALLRPSFDDTLEAYYRLLEQDGTGADA
Ga0207706_112702491	3300025933	Corn Rhizosphere	MNAGDKDLDEAVLAELFANSGVSVEQEEIASVARALTRINAAARVLLRPSFDDTVEAYYRLL
Ga0209624_103919842	3300027895	Forest Soil	MSAAGDNDVGEAALAELIASNGVAVSQEEAAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGVGAGA
Ga0209067_104393652	3300027898	Watersheds	MSAAGDNDIGEAALAELIASSGVAVSQEEVAPVAGALKRINVAARTLLRPSFDDTVE
Ga0209006_112615432	3300027908	Forest Soil	MSTAKETSTAKDLDEAALAALFANSGVAVEPEEIAPVIGALARINAAARTLLRPSFDDTTEAYSRLLAQDDAGAQA
Ga0209698_102037652	3300027911	Watersheds	MSAAGDNDVGEATLAELIASNGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0307498_101736141	3300031170	Soil	ATHSNLCTVFGGGDRGMSAAGDNDVGEATLAELIASNGVAVSQEEVAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0318516_104662962	3300031543	Soil	MSAADDKELGETSLAALLASSGVAVAQDEVASIARTLERIDAAARLLLRPSFDDTLEAYYRLLEQDGAGTDK
Ga0310915_108295382	3300031573	Soil	MSAMGDKDLGEAALAELLTSSGVAVAPDEIAPVARALERINAAARSLPRPSFDDTLEAYYRLLEQDGTGADA
Ga0307474_106390602	3300031718	Hardwood Forest Soil	MSAAGDNDIGEAALAELIASNSVAVSQEEVAPVAGALKRFNAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0307475_110655361	3300031754	Hardwood Forest Soil	MSAAGDNDIGEAALAELMASSGVAVSQEEVAPVAGALKRINVAARTLLRPSFDDTVEAYYRLLEQDGA
Ga0318546_110362332	3300031771	Soil	MGVTEDGISEAALADVFASSGVKVGVEEIPPVVRALVRINAAARVLLRPSFDDAVEAYFRLLEQDDAGADA
Ga0307478_116114372	3300031823	Hardwood Forest Soil	MSAAGDNDVGEATLAELIASNGVAVSQEEAAPVAGALKRINAAARILLRPSFDDTVEAYYRLLEQDGAGADA
Ga0318512_102548532	3300031846	Soil	MSAADDKELGETSLAALLASSGVAVAQDEVASIARTLERIDAAARLLLRPSFDDTLEAYHRLLEQDGAGTDK
Ga0306919_110839311	3300031879	Soil	MSAMGDKDLGEAALAELLTSSGVAVAPDEIAPVARALERINAAARSLPRPSFDDTLEAYYRLLD
Ga0306925_110122962	3300031890	Soil	MSAMGDKDLGEAALAELLTSSGVAVAPDEIAPVARALEHINAAARSLPRPSFDDTLEAYYRLLDQDGTGADA
Ga0318520_108755132	3300031897	Soil	MSVTEDGISEAALADVFASSGVKVGVEEIPLVVRALVRINAAARVLLRPSFDDTVEAYFRLLEQDDAGADA
Ga0306923_111274102	3300031910	Soil	MSAMGDKDLGEAALAELLTSSGIAVAPDEIAPVARALERINAAARSLLRPSFDDTL
Ga0306921_112311362	3300031912	Soil	MSAMGDKDLGEAALAELLTSSGVAVAPDEIAPVARALERINAAARSLPRPSFDDTLEAYYRLLDQDGTGADA
Ga0310912_103012972	3300031941	Soil	MSVTEDGVSEAALADIFASSGVKVEAEEIRPVVRALVRINAAARVAPRPSFDDTVEAYFRLLEQDDAGADA
Ga0310909_109645152	3300031947	Soil	MSAMGDKDLGEAALAELLTSSGVAVAPDEIAPVARALERINAAARSLPRPSFDDTLEAYYRLLEQDGTGAEA
Ga0318531_101977582	3300031981	Soil	MSVTEDGISEAALADVFASSGVKVGVEEIPLVVRALVRINAAARVLLRPSFDGTVEAYFRLLEQDDAGADA
Ga0318549_102646872	3300032041	Soil	MSVTEDGISEAALADVFAGSGVKVGVEEIPLVVRALVRINAAARVLLRPSFDDTVEAYFRLLEQDDAGADA
Ga0311301_106780183	3300032160	Peatlands Soil	MSEPGDGGIGEAALADVLASSSVSVEAEEIGSIVGALARINTAARLLLRPSFDDTSEAYYRLLEQDGAGADA
Ga0306920_1020006332	3300032261	Soil	MSVTEDGISEAALADVFASSGVKVEAEEIRPVVRALVRIDVAARVLLRPSFDDTVEAYFRLLEQDDAGADA
Ga0306920_1028315581	3300032261	Soil	DGVSEAALADIFASSGVKVEAEEIRPVVRALVRINAAARVAPRPSFDDTVEAYFRLLEQDDAGADA
Ga0335074_108443992	3300032895	Soil	MSAAEDKDIDEAALAAIFANSGVAVQPEEIAPVRGALTRIKAAARLLLRPSFDDTLEAYDRLLEQDGAGGEG
Ga0335076_101601892	3300032955	Soil	MSAIGDKDLGEVALTELLTSSGLAVAQEEITPVARTLERINAAARALLRPSFDDTVEAYYRLLEQDGTGADA
Ga0310914_107644852	3300033289	Soil	MSAMGDKDLGEAALAELLTSSGVAVAPDEIAPVARALERINAAARSLLRPSFDDTLEAYYRLLEQDGTGADA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084768

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences