Metagenome / Metatranscriptome Family F084801

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084801
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	53 residues
Representative Sequence	MAAACLASFAILAGGLAALYGLDWYKNRKHNRKSTRDVEEEYTDKEPLAEQLA
Number of Associated Samples	72
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	29.46 %
% of genes near scaffold ends (potentially truncated)	18.75 %
% of genes from short scaffolds (< 2000 bps)	79.46 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.964 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.321 % of family members)
Environment Ontology (ENVO)	Unclassified (37.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.607 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.96% β-sheet: 0.00% Coil/Unstructured: 37.04%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00107	ADH_zinc_N	5.36
PF13847	Methyltransf_31	2.68
PF01938	TRAM	2.68
PF01497	Peripla_BP_2	2.68
PF01011	PQQ	1.79
PF07690	MFS_1	1.79
PF12847	Methyltransf_18	0.89
PF00072	Response_reg	0.89
PF00534	Glycos_transf_1	0.89
PF00583	Acetyltransf_1	0.89
PF13248	zf-ribbon_3	0.89
PF12705	PDDEXK_1	0.89
PF00892	EamA	0.89
PF00027	cNMP_binding	0.89
PF13570	PQQ_3	0.89
PF00011	HSP20	0.89
PF13360	PQQ_2	0.89
PF08450	SGL	0.89
PF03992	ABM	0.89
PF13358	DDE_3	0.89
PF13649	Methyltransf_25	0.89
PF01914	MarC	0.89
PF02518	HATPase_c	0.89
PF00136	DNA_pol_B	0.89
PF01844	HNH	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.68
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.68
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.68
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.68
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	2.68
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG0417	DNA polymerase B elongation subunit	Replication, recombination and repair [L]	0.89
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.89
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.89
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
All Organisms	root	All Organisms	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
cellular organisms	root	All Organisms → cellular organisms	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	28.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	8.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.57 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → environmental samples	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7.14 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.68 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.89 %
Candidatus Korarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	6.25 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1.79 %
Candidatus Methanodesulfokores	genus	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores	0.89 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	6.25 %
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	1.79 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.89 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	6.25 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1.79 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.89 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	3.57 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1.79 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	0.89 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.89 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.89 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
unclassified Nitrososphaera	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera	1.79 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1.79 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	0.89 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	0.89 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.89 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.89 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Nitrososphaera sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	1.79 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1.79 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	0.89 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	0.89 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.89 %
Candidatus Methanodesulfokores washburnensis	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	0.89 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0562888	Not Available	697	Open in IMG/M
3300000156\|NODE_c0745961	All Organisms → cellular organisms → Archaea	26128	Open in IMG/M
3300000156\|NODE_c0747175	All Organisms → cellular organisms → Archaea	39164	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10846818	Not Available	592	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105626804	Not Available	1451	Open in IMG/M
3300000891\|JGI10214J12806_12114395	All Organisms → cellular organisms → Archaea	921	Open in IMG/M
3300004114\|Ga0062593_100031306	All Organisms → cellular organisms → Archaea	3032	Open in IMG/M
3300004114\|Ga0062593_100089694	All Organisms → cellular organisms → Archaea	2121	Open in IMG/M
3300004114\|Ga0062593_100131308	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1852	Open in IMG/M
3300004114\|Ga0062593_101074315	Not Available	833	Open in IMG/M
3300004114\|Ga0062593_101172395	Not Available	804	Open in IMG/M
3300004156\|Ga0062589_100059710	All Organisms → cellular organisms → Archaea	2195	Open in IMG/M
3300004156\|Ga0062589_101340222	Not Available	694	Open in IMG/M
3300004157\|Ga0062590_100062807	All Organisms → cellular organisms → Archaea	2144	Open in IMG/M
3300004157\|Ga0062590_100097106	All Organisms → cellular organisms → Archaea	1851	Open in IMG/M
3300004157\|Ga0062590_101232248	Not Available	732	Open in IMG/M
3300004157\|Ga0062590_101303907	Not Available	716	Open in IMG/M
3300004479\|Ga0062595_100061409	Not Available	1790	Open in IMG/M
3300004479\|Ga0062595_100261708	Not Available	1132	Open in IMG/M
3300004479\|Ga0062595_100348556	Not Available	1030	Open in IMG/M
3300004480\|Ga0062592_100665128	Not Available	899	Open in IMG/M
3300004643\|Ga0062591_100108725	All Organisms → cellular organisms → Archaea	1817	Open in IMG/M
3300004643\|Ga0062591_102173439	Not Available	576	Open in IMG/M
3300005179\|Ga0066684_10295110	All Organisms → cellular organisms → Archaea	1075	Open in IMG/M
3300005187\|Ga0066675_10644201	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis	796	Open in IMG/M
3300005187\|Ga0066675_10789461	Not Available	717	Open in IMG/M
3300005187\|Ga0066675_11224743	Not Available	556	Open in IMG/M
3300005434\|Ga0070709_10041752	Not Available	2828	Open in IMG/M
3300005434\|Ga0070709_10418607	Not Available	1004	Open in IMG/M
3300005434\|Ga0070709_10470508	Not Available	950	Open in IMG/M
3300005435\|Ga0070714_102251743	Not Available	530	Open in IMG/M
3300005436\|Ga0070713_100058122	Not Available	3224	Open in IMG/M
3300005439\|Ga0070711_100820801	Not Available	790	Open in IMG/M
3300005454\|Ga0066687_10705235	Not Available	600	Open in IMG/M
3300005536\|Ga0070697_100264594	Not Available	1473	Open in IMG/M
3300005540\|Ga0066697_10562179	Not Available	638	Open in IMG/M
3300005545\|Ga0070695_100197012	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	1437	Open in IMG/M
3300006032\|Ga0066696_10149342	All Organisms → cellular organisms → Archaea	1456	Open in IMG/M
3300006032\|Ga0066696_10747420	Not Available	626	Open in IMG/M
3300006163\|Ga0070715_10054628	Not Available	1730	Open in IMG/M
3300006175\|Ga0070712_101018041	Not Available	717	Open in IMG/M
3300006755\|Ga0079222_10036008	Not Available	2169	Open in IMG/M
3300006755\|Ga0079222_11297315	Not Available	663	Open in IMG/M
3300006852\|Ga0075433_10912448	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300006903\|Ga0075426_10039668	Not Available	3367	Open in IMG/M
3300006904\|Ga0075424_102098923	Not Available	596	Open in IMG/M
3300006914\|Ga0075436_100002548	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	12544	Open in IMG/M
3300006954\|Ga0079219_10051486	Not Available	1777	Open in IMG/M
3300009147\|Ga0114129_12485037	Not Available	619	Open in IMG/M
3300010152\|Ga0126318_10601704	Not Available	506	Open in IMG/M
3300010371\|Ga0134125_10818759	Not Available	1024	Open in IMG/M
3300010396\|Ga0134126_11395722	All Organisms → cellular organisms → Bacteria → Terrabacteria group	774	Open in IMG/M
3300010396\|Ga0134126_11594346	Not Available	718	Open in IMG/M
3300010401\|Ga0134121_10366926	Not Available	1292	Open in IMG/M
3300011119\|Ga0105246_12501805	Not Available	508	Open in IMG/M
3300012201\|Ga0137365_10092597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2276	Open in IMG/M
3300012285\|Ga0137370_10712889	Not Available	623	Open in IMG/M
3300012884\|Ga0157300_1000369	All Organisms → cellular organisms → Archaea	3817	Open in IMG/M
3300012884\|Ga0157300_1002329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1892	Open in IMG/M
3300012897\|Ga0157285_10000499	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	5729	Open in IMG/M
3300012897\|Ga0157285_10140676	Not Available	708	Open in IMG/M
3300012897\|Ga0157285_10382313	Not Available	502	Open in IMG/M
3300012906\|Ga0157295_10160280	Not Available	683	Open in IMG/M
3300012908\|Ga0157286_10052194	All Organisms → cellular organisms → Archaea	1053	Open in IMG/M
3300012915\|Ga0157302_10006930	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2621	Open in IMG/M
3300012915\|Ga0157302_10040662	Not Available	1274	Open in IMG/M
3300012951\|Ga0164300_10184051	Not Available	1009	Open in IMG/M
3300012951\|Ga0164300_10273422	Not Available	870	Open in IMG/M
3300012955\|Ga0164298_10130080	Not Available	1382	Open in IMG/M
3300012955\|Ga0164298_10545295	Not Available	785	Open in IMG/M
3300012957\|Ga0164303_10027267	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	2296	Open in IMG/M
3300012988\|Ga0164306_11636469	Not Available	556	Open in IMG/M
3300013096\|Ga0157307_1039458	Not Available	849	Open in IMG/M
3300014497\|Ga0182008_10014093	Not Available	4192	Open in IMG/M
3300014497\|Ga0182008_10028842	All Organisms → cellular organisms → Archaea	2806	Open in IMG/M
3300014497\|Ga0182008_10248948	All Organisms → cellular organisms → Archaea	916	Open in IMG/M
3300014497\|Ga0182008_10435187	Not Available	710	Open in IMG/M
3300015077\|Ga0173483_10013480	All Organisms → cellular organisms → Archaea	2819	Open in IMG/M
3300015077\|Ga0173483_10054027	All Organisms → cellular organisms → Archaea	1546	Open in IMG/M
3300015200\|Ga0173480_10528213	Not Available	711	Open in IMG/M
3300015262\|Ga0182007_10029627	Not Available	1874	Open in IMG/M
3300015265\|Ga0182005_1135870	Not Available	708	Open in IMG/M
3300015265\|Ga0182005_1166465	Not Available	648	Open in IMG/M
3300018433\|Ga0066667_10754426	Not Available	822	Open in IMG/M
3300018433\|Ga0066667_11229258	Not Available	653	Open in IMG/M
3300019356\|Ga0173481_10007761	All Organisms → cellular organisms → Archaea	2946	Open in IMG/M
3300019356\|Ga0173481_10025760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1838	Open in IMG/M
3300019356\|Ga0173481_10476695	Not Available	630	Open in IMG/M
3300019361\|Ga0173482_10112650	Not Available	1006	Open in IMG/M
3300019361\|Ga0173482_10151433	Not Available	904	Open in IMG/M
3300019362\|Ga0173479_10033566	All Organisms → cellular organisms → Archaea	1574	Open in IMG/M
3300021358\|Ga0213873_10036848	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1243	Open in IMG/M
3300021358\|Ga0213873_10105211	Not Available	815	Open in IMG/M
3300021362\|Ga0213882_10031341	All Organisms → cellular organisms → Archaea	2057	Open in IMG/M
3300021362\|Ga0213882_10153866	Not Available	943	Open in IMG/M
3300021362\|Ga0213882_10154466	Not Available	941	Open in IMG/M
3300021384\|Ga0213876_10097611	All Organisms → cellular organisms → Archaea	1557	Open in IMG/M
3300021384\|Ga0213876_10334845	Not Available	805	Open in IMG/M
3300021384\|Ga0213876_10335448	Not Available	804	Open in IMG/M
3300021445\|Ga0182009_10019714	All Organisms → cellular organisms → Archaea	2532	Open in IMG/M
3300021445\|Ga0182009_10258291	Not Available	867	Open in IMG/M
3300022889\|Ga0247785_1027464	Not Available	657	Open in IMG/M
3300023071\|Ga0247752_1061378	Not Available	603	Open in IMG/M
3300025898\|Ga0207692_10162392	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1288	Open in IMG/M
3300025905\|Ga0207685_10176516	Not Available	987	Open in IMG/M
3300025906\|Ga0207699_10321609	Not Available	1085	Open in IMG/M
3300025929\|Ga0207664_10885347	Not Available	802	Open in IMG/M
3300025939\|Ga0207665_10005894	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	8153	Open in IMG/M
3300026861\|Ga0207503_1006434	Not Available	676	Open in IMG/M
3300027466\|Ga0207484_103140	Not Available	721	Open in IMG/M
3300027992\|Ga0247750_1028984	Not Available	589	Open in IMG/M
3300034820\|Ga0373959_0065540	Not Available	812	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.25%
Host-Associated	Host-Associated	16.96%
Engineered	Engineered	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.36%
Plants	Host-Associated → Plants	16.96%
Solid Waste	Engineered → Solid Waste	1.79%
Aquatic	Environmental → Aquatic	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.29%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	2.68%
Roots	Host-Associated → Plants → Roots	2.68%
Grass	Engineered → Solid Waste → Grass	1.79%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.29%
Loam	Environmental → Terrestrial → Soil → Loam	13.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.39%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Roots → Unclassified	2.68%
Composting	Engineered → Solid Waste → Grass → Composting	1.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.46%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	22.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.50%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	2.68%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	16.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.46%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.68%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	2.68%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.79%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	1.79%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026861	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-12 (SPAdes)	Environmental	Open in IMG/M
3300027466	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-B (SPAdes)	Environmental	Open in IMG/M
3300027992	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_05628881	3300000033	Soil	MAAACFASFAILAGSLVALYGLDWYKNRKQNSRKSTKKVVEKGYYTIKEPLAEEQLI*
NODE_074596123	3300000156	Sugar Cane Bagasse Incubating Bioreactor	VATACLASLAILAGGLAALYGLDWYKNRKHNRKSTRDVKEGYTDKEPLTERLA*
NODE_074717534	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MTAVYLASFAIFAGVLATSYGLDRYKNRKQNRKVEEEHNAKEPLDEQLA*
ICChiseqgaiiFebDRAFT_108468181	3300000363	Soil	MGSACLASFAILAGGIAALYGLDWYKNRKQSKKSTKKLAVEDYTIKEPIAEQLA*
INPhiseqgaiiFebDRAFT_1056268044	3300000364	Soil	MATACFASFAILAGSLVALYGLDWYRNRKQNRKSARKVEKEYTAKEPIAEQLA*
JGI10214J12806_121143953	3300000891	Soil	MAAACLASFAILAGILATICGLDWYKNRKQNRKVARKVKEEEQDYNAKEPLAEQLA*
Ga0062593_1000313062	3300004114	Soil	MAAACLASFAIFAGVLVSFYGLDWYKSRKQNKKLSRKVKVEEEDYNAKEPLAEQLA*
Ga0062593_1000896941	3300004114	Soil	CLASFAILAGILATICGLGWYKNRKQNRRLSRKVEEEEEEDYNNTKEPFAEQLV*
Ga0062593_1001313083	3300004114	Soil	MAAACLASFAIFAGVLETLYGLDWYKNRKQNRRLARKVEKEHYSTKESLAEQLV*
Ga0062593_1010743152	3300004114	Soil	MAAACLASLAILAGGLATLYGLDWYKNRKQNRRLARKMEEEDHNTKEPFAEQLV*
Ga0062593_1011723952	3300004114	Soil	MAAACLASFAIFAGVLLALYGLDWYKNRKQNRKLARKVEEEDHNTKEPLAEQLA*
Ga0062589_1000597105	3300004156	Soil	MAAACLASFAILADVLAALYGLDWYKNRKQNRKVEEEDHITKEPLAEQLV*
Ga0062589_1013402222	3300004156	Soil	MAAACLASFRIFAGVLTALYGLDWYKNRKQKEEYTTKEPLAEQLAWLISINANNNQSNQI
Ga0062590_1000628075	3300004157	Soil	MAAVCLASFAILAGGLAIGLDWYKNRKQNRRLTRKVEEDHNTKEPLAEQVA*
Ga0062590_1000971062	3300004157	Soil	MAAACLASFAIFAGVLVSFYGLDWYKSRKQNKKLSRKVKVEEENYNAKEPLAEQLA*
Ga0062590_1012322481	3300004157	Soil	MAAACLASFRIFAGVLTALYGLDWYKNRADLEEYTTKEPLAEQLAWLISINANNNQSNQI
Ga0062590_1013039071	3300004157	Soil	MAAACLASFAILADVLAALYGLDWYKNRKQNRKVEEEDHITKEPLAEQL
Ga0062595_1000614093	3300004479	Soil	MATACLASFAILAGSLVALYGLDWYKNRKQNSRTSTKKMEKECYTTKPLAEQLI*
Ga0062595_1002617082	3300004479	Soil	MTALYLASFAIFAGVLATSYGLDRYKNRKQNRKVEEEHNAKEPLDEQLA*
Ga0062595_1003485562	3300004479	Soil	MAGICLANFAILAGGLATLYGLDWYRNRKRNKRSIREIEEDYTTKEPVAEQLA*
Ga0062592_1006651283	3300004480	Soil	VCLASFAILAGILATICGLDWYKNRKQNRKVARKVKEEEQDYNAKEPLAEQLA*
Ga0062591_1001087251	3300004643	Soil	MAAACLASFAILADVLAALYGLDWYKNRKQNRKVEEEDHITKEPLAEQLA*
Ga0062591_1021734391	3300004643	Soil	AAACLASLAILAGGLATLYGLDWYKNRKQNRRLARKMEEEDHNTKEPFAEQLV*
Ga0066684_102951104	3300005179	Soil	MAAACLASFAILAGGLAALYGLDWYKNRKHTRKSTKDVEEEYIDKEPLAEQ
Ga0066675_106442011	3300005187	Soil	MAAACFASFAILAGSLVALYGLDWYRNRKQNRKSTRKVEKEYTTKEPIAEQLA*
Ga0066675_107894612	3300005187	Soil	LASFAIFAGVLATLYGLDRYKNRKQNRKVEEEHNAKEPLDKQLA*
Ga0066675_112247432	3300005187	Soil	MAAACLASFAILAGGLAALYGIDWYKNRKQNRRLARKVEEEEQDYNNTKEPLAEQLA*
Ga0070709_100417523	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAGICLASFAILAGGLATLYGLDWYRNRKRNKRSIREIEEDYTTKEPVAEQLA*
Ga0070709_104186073	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAAACLASFAILAGGLAALYGLDWYKNRKHNRKSTRDVKEEYTDKEPLAEQLA*
Ga0070709_104705082	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LASFAIFAGVLTTLYGLDRYKNRKQNRKVEEEHNAKEPLDKQLA*
Ga0070714_1022517432	3300005435	Agricultural Soil	VSFAILAGGLATLYGLDWYKNRKQNRRLARKIEEEDQIAKEPLTGQLA*
Ga0070713_1000581225	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MAGICLASFAILAGGLATLYGLDWYRNRKRNKRSIRETEEDYTTKEPVAEQLA*
Ga0070711_1008208011	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LASFAIFAGVLTTLYGLDRYKNRKVEEEHNAKEPLDKQLA*
Ga0066687_107052352	3300005454	Soil	MAAACLVSFAILAGGLAALYGLDWYKNRKHSRKSTRDVEEEYTDKEPLAEQLA*
Ga0070697_1002645945	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAAVCLASFAILAGGLATLYGLDWYRNRKRNKRSIREIEEDYTTKEPVAEQ
Ga0066697_105621791	3300005540	Soil	MAAACLASFAIFAGVLVSLYGWDWYKNRKQNRKLARKVEEEDHITKEPLAEQLA*
Ga0070695_1001970124	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VATACLASLAILAGGLAALYGLDWYKNRKHNRKSTRDVKEGYTDKEPLAERLA*
Ga0066696_101493423	3300006032	Soil	MAAACLVSFAILAGGLAALYGLDWYKNRKHNRKSRDVEEEYTDKEPLAEQLA*
Ga0066696_107474202	3300006032	Soil	MAAACLASFAILAGGLATLYGLDWYKNRKQNRKLARKVGEEVEDYNAKEPLAEQLA*
Ga0070715_100546283	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MAGICLASFAILAGGLATLYGLDWYRNRKRNRRSIREIEEDYTTKEPVAEQLA*
Ga0070712_1010180412	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LASFAIFAGVLTTLYGLDRYKNRKQNRKVEEEHNAKEPLDEQLA*
Ga0079222_100360085	3300006755	Agricultural Soil	VATACLASLAILAGGLAALYGLDWYKNRKSIRDVKEGYTDKEPLAERLA*
Ga0079222_112973152	3300006755	Agricultural Soil	MAAACLAASFAILAGGLAALYGLDWYKNRKHNRKSTKDVEEEYTDKEPLAEQLA*
Ga0075433_109124482	3300006852	Populus Rhizosphere	MATACLASFAILAGSLVALYGLDWYKNRKQNSRKSTKKVVEKGYYTIKEPLAEEQLI*
Ga0075426_100396685	3300006903	Populus Rhizosphere	MAGICLASFAILAGGLATLYGLDWYRNRKRNKRSIREIEEDYTTKEPVAEQLAR*
Ga0075424_1020989232	3300006904	Populus Rhizosphere	VMATACLASFAILAGSLVALYGLDWYKNRKQNSRKSTKKVVEKGYYTIKEPLAEEQLI*
Ga0075436_1000025486	3300006914	Populus Rhizosphere	MAAACLAASFAILAGGLAALYGLDWYKNRKHNRKSTRDVKEGYTDKEPLAERLA*
Ga0079219_100514863	3300006954	Agricultural Soil	MAAACLASFAILAGGLAALYGLDWYKNRKHNRKSTKDVEEEYTDKEPLAEQLA*
Ga0114129_124850371	3300009147	Populus Rhizosphere	MAVACLASIAILAGGMAALYGLDWYKNRRQNRKLTKRIVEEDHTAKE
Ga0126318_106017041	3300010152	Soil	LASFAILAGGLATLYGLDWYKNRKQNRRLARKVEEEEHKAKEPLAE*
Ga0134125_108187591	3300010371	Terrestrial Soil	MAAACLVSFAILAGGLSALYGLDWYKNRKHNRKSTRDVKEGYTDKEPLAERLA*
Ga0134126_113957222	3300010396	Terrestrial Soil	MAAACLASFAILAGVLAASYGLDWYKNRKQNGKLARKVEEKVEDYNNAKEPLAEQLA
Ga0134126_115943462	3300010396	Terrestrial Soil	MAAACLVSFAILAGGLSALYGLDWYKNRKHNRKATRDVEEEYTEKEPLAEQLA*
Ga0134121_103669262	3300010401	Terrestrial Soil	VATACLASLVILAGGLAALYGLDWYKNRKHNRKSTRDVKEGYTDKEPLAERLA*
Ga0105246_125018051	3300011119	Miscanthus Rhizosphere	MAAACLVSFAILAGGLSALYGLDWYKNRKHNRKSRDVEEEYTDKEPL
Ga0137365_100925972	3300012201	Vadose Zone Soil	MAAACFASFAILAGSLVALYGLDWYKNRKENSRKSSRNIKKEYTAKEPLAEQLA*
Ga0137370_107128891	3300012285	Vadose Zone Soil	MAAACFASFAILAGSLVALYGLDWYRNRKQNRKSTRKMEKEYTTKEPIAEQLA*
Ga0157300_10003696	3300012884	Soil	MAAACFSSFAILAGSLVALYGLDWYRNRKQNRKSTRKVEKEYTTKEPIAGQLA*
Ga0157300_10023291	3300012884	Soil	MATACLASFAILAGSLVALYGLDWYKNRKQNSRKSGKKVVEKEYYTNKELLAEEQLI*
Ga0157285_100004998	3300012897	Soil	IIFMGSACLASFAILAGGIAALYGLDWYKNRKQSKKSTKKLAVEDYTIKEPIAEQLA*
Ga0157285_101406761	3300012897	Soil	MAAACLASFAILAGILATICGLDWYKNRKQNRKLARKVKEEDYNAKEPLAEQLA*
Ga0157285_103823131	3300012897	Soil	MAAACFASFAILAGGLAALYGLDWYKNRKQNRKLARKVEEEDHNTKEPLAEQLA*
Ga0157295_101602802	3300012906	Soil	MAAACLASFAILAGGLVVLYGLDWYKNRKQNKKLSRKVKEEDYNAKEPLAEQLA*
Ga0157286_100521941	3300012908	Soil	MAAACLASFAILAGGLAALYGLDWYKNRKQNRKLARRVEEEDHITKEPLAEQLA*
Ga0157302_100069303	3300012915	Soil	MAAACFASFAILAGGLAALYGLDWYKNRKQNRKLARRVEEEDHITKEPLAEQLA*
Ga0157302_100406623	3300012915	Soil	MAAACLASFAILAGGLAALYGLDWYKNRKQNRKLARRVEEEDHNAKEPLAEQLA*
Ga0164300_101840511	3300012951	Soil	MAAACLVSFAILAGGLAALYGLDWYKNRKHNRKSTRDVEEEYTDKEPLAEQLA*
Ga0164300_102734221	3300012951	Soil	IFAGVLSTLYGLDRYKNRKVEEEHNAKEPLDEQLA*
Ga0164298_101300803	3300012955	Soil	MAAACLASFAILAGGLAALYGLDWYKNRKHNRKSTRDVEEEYTDKEPLAEQLA*
Ga0164298_105452952	3300012955	Soil	MTAVCLASFTIFAGVLSTLYGLDRYKNRKVEEEHNAKEPLDEQLA*
Ga0164303_100272674	3300012957	Soil	MAAACLVSFAILAGGLAALYGLDWYKNRKHNRKSTRNVEEEYTDKEPLAEQLA*
Ga0164306_116364691	3300012988	Soil	MAGICFASFAILAGGLATLYGLDWYRNRKRNKRSIREIEEDYTTKEPVAEQLA*
Ga0157307_10394582	3300013096	Soil	MAAVCLASFAILAGILATICGLGWYKNRKQNRRLSRKVEEEEEEDYNNTKEPFAEQLV*
Ga0182008_100140932	3300014497	Rhizosphere	MSAVCLASFAILAGGLATLYGLDWYRNRKRNKRSIREIEEDYTTKEPVAEQLA*
Ga0182008_100288423	3300014497	Rhizosphere	MATACLASFAILAGGLVALYGLEWYKNRKQNSRKSGKKVVEKEYYTNKELLAEEQLI*
Ga0182008_102489482	3300014497	Rhizosphere	MAAACFASFAILAGGLAALYGLDWYKNRKQNRKLARRVEEEDHITKEPLAE*
Ga0182008_104351871	3300014497	Rhizosphere	MAAACLASFAILAGGLAALYGLGWYKNRKQNRKVEEEDHITKELLAE*
Ga0173483_100134802	3300015077	Soil	MAAVCLASFAILAGGLAALYGLGWYKNRKQNRRLSRKVEEEDYNNTKEPLAEQLV*
Ga0173483_100540273	3300015077	Soil	AAACFASFAILAGGLAALYGLDWYKNRKQNRKLARRVEEEDHITKEPLAEQLA*
Ga0173480_105282131	3300015200	Soil	VAAACFASFAILAGGLAALYGLDWYKNRKQNRKVEEEDHITKEPLAEQLA*
Ga0182007_100296273	3300015262	Rhizosphere	IICPIIDHIMSAVCLASFAILAGGLATLYGLDWYRNRKRNKRSIREIEEDYTTKEPVAEQLA*
Ga0182005_11358702	3300015265	Rhizosphere	MAAACLASFAILADVLAALYGLDWYKNRKQNRKVEEEDHITKELLAE*
Ga0182005_11664651	3300015265	Rhizosphere	MACLASFAILAGGLAALYGLDWYKNRKHNRKSTRDVKEEYTDKEPLAEQLA*
Ga0066667_107544262	3300018433	Grasslands Soil	MAAACFASFAILAGSLVALYGLDWYRNRKQNRKSTRKVEKEYATKEPIAEQLA
Ga0066667_112292582	3300018433	Grasslands Soil	MAAACLASFAILAGGLAALYGSDWYKNRKQNRKSIGKVEEDHNTKEPLAEQLP
Ga0173481_100077612	3300019356	Soil	MAAACFASFAILAGSLVALYGLDWYRNRKQNRKSTRKVEKEYTTKEPIAGQLA
Ga0173481_100257603	3300019356	Soil	MATACLASFAILAGSLVALYGLDWYKNRKQNSRKSGKKVVEKEYYTNKELLAEEQLI
Ga0173481_104766951	3300019356	Soil	MAAVCLASFAILAGGLVALYGLGWYKNRKQNRRLSRKVEEEDYNNTKEPLAEQLV
Ga0173482_101126501	3300019361	Soil	IMAAACLASFAILADVLAALYGLDWYKNRKQNRKVEEEDHITKEPLAEQLV
Ga0173482_101514331	3300019361	Soil	MAAACFSSFAILAGSLVALYGLDWYRNRKQNRKSTRKVEKEYTTKEPIAGQLA
Ga0173479_100335661	3300019362	Soil	MAAVCLASFAILAGGLAALYGLGWYKNRKQNRRLSRKVEEEDYNNTKEPLAEQLV
Ga0213873_100368481	3300021358	Rhizosphere	MAAACLASFAIFAGVLASLYGLGWYKNRKQNRKLARKVEEEDHIAKEPLAKQLA
Ga0213873_101052111	3300021358	Rhizosphere	MAASCLARFPILAGGLVALYELDWYSKNRKQNRKLARNVEEEVEDYNVKEPLDGRRIVYRYIFKH
Ga0213882_100313412	3300021362	Exposed Rock	MAPACLASFAILAGGLATLYGLDWYSKNRKQNRNLSRKVEEEVEDYNNTKEPLAEQLT
Ga0213882_101538661	3300021362	Exposed Rock	MEAACLASIAIFAGVLATLYGLGWYKNRKQNRRLARKVEEEDHNTKEPLVEQLA
Ga0213882_101544661	3300021362	Exposed Rock	MAAACLASFAIFAGVLASLYGLGWYKNRKQNRKLARKVEEEDHIAKEPLAEQLA
Ga0213876_100976112	3300021384	Plant Roots	MAPACLASFAILAGGLATLYGLDWYSKNRKQNRNLSRKVEEEVEDYNNTKEPLAE
Ga0213876_103348452	3300021384	Plant Roots	MAAACLASFAIFGVLGALFGLDWYKNRKKNRKLARSVEEEEEHNAKEPLAEQLA
Ga0213876_103354482	3300021384	Plant Roots	MAAVCLASFAILAGGLVTLYGLGWYKNRKQNRKLARKVEEEEPLAEQLA
Ga0182009_100197144	3300021445	Soil	MAAACFASFAILAGSLVALYGLDWYRNRKQNRKSTRKVEKEYTTKEPIAEQLA
Ga0182009_102582911	3300021445	Soil	MTAVYLASFAIFAGVLATLYGLDRYKNRKQNRKVEEEHNAKEPLDEQLA
Ga0247785_10274642	3300022889	Soil	MAAACLASFRIFAGVLTALYGLDWYKNRKQNRKVARKVKEEEQDYNAKEPLAEQLA
Ga0247752_10613782	3300023071	Soil	MAAACLASFAILAGILATICGLGWYKNRKQNRRLSRKVEEEEEEDYNNTKEPFAEQLV
Ga0207692_101623921	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MAAACLVSFAILAGGLSALYGLDWYKNRKHNRKSRDVEEEYTDKEPLAEQLA
Ga0207685_101765162	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MAGICLASFAILAGGLATLYGLDWYRNRKRNRRSIREIEEDYTTKEPVAEQLA
Ga0207699_103216092	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MAAACLVSFAILAGGLSALYELDWYKNRKHNRKSTRDVKEEYTDKEPL
Ga0207664_108853471	3300025929	Agricultural Soil	MAAACLVSFAILAGGLSALYGLDWYKNRKQNRRLARKIEEEDQIAKEPLTGQLA
Ga0207665_100058945	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MAAACLVSFAILAGGLAALYGLDWYKNRKHNRKSTRDVKEEYTDKEPLAEQLA
Ga0207503_10064342	3300026861	Soil	MAAACLASFAILAGILATICGLDWYKNRKQNRKVARKVKEEEQDYNAKEPLAEQLA
Ga0207484_1031402	3300027466	Soil	VATACLASLAILAGGLAALYGLDWYKNRKHNRKSTRDVKEGYTDKEPLAERLA
Ga0247750_10289841	3300027992	Soil	VAAACFASFAILAGGLAALYGLDWYKNRKQNRKLARRVEEEDHITKEPLAEQLA
Ga0373959_0065540_41_208	3300034820	Rhizosphere Soil	MAAACLASFAILAGGLAALYGLDWYKNRKQNRKLARKVEEEEDHITKEPLAEQLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084801

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences