Metagenome / Metatranscriptome Family F084895

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F084895
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	70 residues
Representative Sequence	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEEKEPQATGAI
Number of Associated Samples	85
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.68 %
% of genes near scaffold ends (potentially truncated)	40.18 %
% of genes from short scaffolds (< 2000 bps)	79.46 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (66.071 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.393 % of family members)
Environment Ontology (ENVO)	Unclassified (25.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 9.86% Coil/Unstructured: 90.14%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF11272	DUF3072	11.61
PF04392	ABC_sub_bind	4.46
PF07508	Recombinase	3.57
PF06186	DUF992	2.68
PF00072	Response_reg	1.79
PF06718	DUF1203	1.79
PF00313	CSD	1.79
PF08241	Methyltransf_11	1.79
PF07690	MFS_1	1.79
PF05239	PRC	0.89
PF06411	HdeA	0.89
PF13545	HTH_Crp_2	0.89
PF11149	DUF2924	0.89
PF06823	DUF1236	0.89
PF02796	HTH_7	0.89
PF08592	Anthrone_oxy	0.89
PF12760	Zn_Tnp_IS1595	0.89
PF02518	HATPase_c	0.89
PF12840	HTH_20	0.89
PF01548	DEDD_Tnp_IS110	0.89
PF03330	DPBB_1	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.46
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	3.57
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
All Organisms	root	All Organisms	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
cellular organisms	root	All Organisms → cellular organisms	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.04 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.57 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.79 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.89 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.57 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.89 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.89 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.89 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.57 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.89 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.89 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.89 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.57 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.89 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.89 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.89 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886006\|SwRhRL3b_contig_439666	Not Available	845	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c010544	Not Available	784	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1013356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1319	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10095001	Not Available	738	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10114994	Not Available	658	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1019234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1292	Open in IMG/M
3300000890\|JGI11643J12802_10134392	All Organisms → cellular organisms → Bacteria	3496	Open in IMG/M
3300004479\|Ga0062595_100592991	Not Available	861	Open in IMG/M
3300004479\|Ga0062595_101331249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	649	Open in IMG/M
3300004633\|Ga0066395_10379671	Not Available	792	Open in IMG/M
3300005289\|Ga0065704_10233800	Not Available	1035	Open in IMG/M
3300005294\|Ga0065705_10111258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4227	Open in IMG/M
3300005294\|Ga0065705_10140007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2178	Open in IMG/M
3300005295\|Ga0065707_10483063	Not Available	763	Open in IMG/M
3300005328\|Ga0070676_10412342	Not Available	942	Open in IMG/M
3300005331\|Ga0070670_101702106	Not Available	580	Open in IMG/M
3300005332\|Ga0066388_101279302	All Organisms → cellular organisms → Bacteria → Proteobacteria	1262	Open in IMG/M
3300005332\|Ga0066388_102723444	Not Available	902	Open in IMG/M
3300005344\|Ga0070661_101730684	Not Available	530	Open in IMG/M
3300005354\|Ga0070675_100910133	Not Available	806	Open in IMG/M
3300005365\|Ga0070688_100392776	Not Available	1025	Open in IMG/M
3300005434\|Ga0070709_10123550	All Organisms → cellular organisms → Bacteria	1758	Open in IMG/M
3300005544\|Ga0070686_100417959	Not Available	1024	Open in IMG/M
3300005713\|Ga0066905_100033706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2942	Open in IMG/M
3300005713\|Ga0066905_100074453	All Organisms → cellular organisms → Bacteria → Proteobacteria	2201	Open in IMG/M
3300005713\|Ga0066905_100139805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1725	Open in IMG/M
3300005713\|Ga0066905_102032648	Not Available	534	Open in IMG/M
3300005764\|Ga0066903_100325132	All Organisms → cellular organisms → Bacteria → Proteobacteria	2460	Open in IMG/M
3300005764\|Ga0066903_100676349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1812	Open in IMG/M
3300005764\|Ga0066903_101361479	Not Available	1330	Open in IMG/M
3300005764\|Ga0066903_101453130	All Organisms → cellular organisms → Bacteria → Proteobacteria	1291	Open in IMG/M
3300005764\|Ga0066903_104502174	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300005841\|Ga0068863_102236450	Not Available	557	Open in IMG/M
3300005937\|Ga0081455_10078702	All Organisms → cellular organisms → Bacteria	2709	Open in IMG/M
3300005937\|Ga0081455_10211130	Not Available	1446	Open in IMG/M
3300006049\|Ga0075417_10004263	All Organisms → cellular organisms → Bacteria	4695	Open in IMG/M
3300006049\|Ga0075417_10519559	Not Available	600	Open in IMG/M
3300006854\|Ga0075425_100081193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3666	Open in IMG/M
3300006854\|Ga0075425_101162803	Not Available	877	Open in IMG/M
3300006881\|Ga0068865_101410421	Not Available	622	Open in IMG/M
3300006904\|Ga0075424_100994202	Not Available	894	Open in IMG/M
3300006914\|Ga0075436_100499275	Not Available	890	Open in IMG/M
3300009094\|Ga0111539_11600602	Not Available	755	Open in IMG/M
3300009094\|Ga0111539_12040799	Not Available	665	Open in IMG/M
3300009098\|Ga0105245_11534821	Not Available	717	Open in IMG/M
3300009100\|Ga0075418_10313146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1674	Open in IMG/M
3300009100\|Ga0075418_10534731	Not Available	1259	Open in IMG/M
3300009148\|Ga0105243_10712807	Not Available	979	Open in IMG/M
3300009156\|Ga0111538_11307167	Not Available	915	Open in IMG/M
3300009162\|Ga0075423_10094460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3125	Open in IMG/M
3300009162\|Ga0075423_11936191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300009176\|Ga0105242_12340771	Not Available	581	Open in IMG/M
3300010046\|Ga0126384_10099690	Not Available	2140	Open in IMG/M
3300010046\|Ga0126384_10819600	Not Available	834	Open in IMG/M
3300010047\|Ga0126382_10039033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2683	Open in IMG/M
3300010358\|Ga0126370_10301805	Not Available	1270	Open in IMG/M
3300010359\|Ga0126376_10123637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2023	Open in IMG/M
3300010371\|Ga0134125_11314653	Not Available	789	Open in IMG/M
3300010376\|Ga0126381_103490703	Not Available	618	Open in IMG/M
3300012948\|Ga0126375_10526853	Not Available	887	Open in IMG/M
3300012960\|Ga0164301_10527854	Not Available	857	Open in IMG/M
3300012961\|Ga0164302_10018960	All Organisms → cellular organisms → Bacteria	2931	Open in IMG/M
3300012961\|Ga0164302_10187573	Not Available	1258	Open in IMG/M
3300012961\|Ga0164302_11841237	Not Available	512	Open in IMG/M
3300012987\|Ga0164307_10277163	Not Available	1184	Open in IMG/M
3300012987\|Ga0164307_10420303	Not Available	990	Open in IMG/M
3300012989\|Ga0164305_10940547	Not Available	730	Open in IMG/M
3300014325\|Ga0163163_10077744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3314	Open in IMG/M
3300014745\|Ga0157377_10943677	Not Available	649	Open in IMG/M
3300014745\|Ga0157377_11359845	Not Available	558	Open in IMG/M
3300015371\|Ga0132258_13679156	Not Available	1047	Open in IMG/M
3300015373\|Ga0132257_101665153	Not Available	817	Open in IMG/M
3300015374\|Ga0132255_101899250	Not Available	905	Open in IMG/M
3300016270\|Ga0182036_10540075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	928	Open in IMG/M
3300016319\|Ga0182033_10028948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3509	Open in IMG/M
3300016319\|Ga0182033_10095180	Not Available	2176	Open in IMG/M
3300016319\|Ga0182033_10926961	Not Available	772	Open in IMG/M
3300016387\|Ga0182040_10041138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2803	Open in IMG/M
3300016387\|Ga0182040_10686012	Not Available	836	Open in IMG/M
3300016404\|Ga0182037_10041975	Not Available	2995	Open in IMG/M
3300017792\|Ga0163161_10884078	Not Available	756	Open in IMG/M
3300018028\|Ga0184608_10027051	All Organisms → cellular organisms → Bacteria → Proteobacteria	2133	Open in IMG/M
3300018076\|Ga0184609_10343518	Not Available	697	Open in IMG/M
3300021560\|Ga0126371_10370875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1569	Open in IMG/M
3300022756\|Ga0222622_10512899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	858	Open in IMG/M
3300025919\|Ga0207657_10465584	Not Available	991	Open in IMG/M
3300025926\|Ga0207659_10313384	Not Available	1292	Open in IMG/M
3300026023\|Ga0207677_12138785	Not Available	520	Open in IMG/M
3300026088\|Ga0207641_10702736	Not Available	996	Open in IMG/M
3300026121\|Ga0207683_11821905	Not Available	558	Open in IMG/M
3300027873\|Ga0209814_10041905	Not Available	1905	Open in IMG/M
3300027874\|Ga0209465_10087317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1523	Open in IMG/M
3300027909\|Ga0209382_10017826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8638	Open in IMG/M
3300028793\|Ga0307299_10025831	Not Available	2121	Open in IMG/M
3300028819\|Ga0307296_10114078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1451	Open in IMG/M
3300028884\|Ga0307308_10039981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2196	Open in IMG/M
3300028885\|Ga0307304_10472502	Not Available	572	Open in IMG/M
3300031573\|Ga0310915_10109701	Not Available	1875	Open in IMG/M
3300031719\|Ga0306917_10728355	Not Available	779	Open in IMG/M
3300031720\|Ga0307469_10801571	Not Available	864	Open in IMG/M
3300031720\|Ga0307469_11119877	Not Available	741	Open in IMG/M
3300031879\|Ga0306919_10332999	Not Available	1157	Open in IMG/M
3300031890\|Ga0306925_10526979	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300031942\|Ga0310916_10418782	Not Available	1140	Open in IMG/M
3300031946\|Ga0310910_11028426	Not Available	643	Open in IMG/M
3300032001\|Ga0306922_10333248	All Organisms → cellular organisms → Bacteria	1628	Open in IMG/M
3300032001\|Ga0306922_10597038	Not Available	1170	Open in IMG/M
3300032059\|Ga0318533_11364011	Not Available	518	Open in IMG/M
3300032174\|Ga0307470_11429668	Not Available	572	Open in IMG/M
3300032205\|Ga0307472_100232094	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300033289\|Ga0310914_10730984	Not Available	886	Open in IMG/M
3300034662\|Ga0314783_181110	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.29%
Host-Associated	Host-Associated	35.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.61%
Plants	Host-Associated → Plants	35.71%
Aquatic	Environmental → Aquatic	2.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.61%
Sediment	Environmental → Aquatic → Sediment	2.68%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.86%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.25%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.68%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.46%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0629.00001620	2162886006	Switchgrass Rhizosphere	MPSRRVASKYIALAHINPIVCLRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIV
ARcpr5yngRDRAFT_0105441	3300000043	Arabidopsis Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMI
AF_2010_repII_A01DRAFT_10133562	3300000580	Forest Soil	MPPRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEEITADTEAI*
AF_2010_repII_A1DRAFT_100950012	3300000597	Forest Soil	VTDRALAYFGGSGMPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRSFECAHCGKEMKMIVEETEPQPSGAI*
AF_2010_repII_A1DRAFT_101149942	3300000597	Forest Soil	MPPRRQPFTYIPLAHIKPIVCSRCGEKARAVWHSPLPAGLKGEMLSFECAHCGKEMKMIVGETEPQPTGAI*
AF_2010_repII_A100DRAFT_10192342	3300000655	Forest Soil	MPPRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEXITADTEAI*
JGI11643J12802_101343926	3300000890	Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLAGEMRTFECEHCGKKMKLIVEETEPQATGAI*
Ga0062595_1005929912	3300004479	Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEPQPTGAI*
Ga0062595_1013312492	3300004479	Soil	MSVRRKAFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEETEPQAAGAN*
Ga0066395_103796711	3300004633	Tropical Forest Soil	AHIKPIVCSRCGEKARAVWHSPLPAGLKGEMLSFECAHCGKEMKMIVGETEPQPTGAI*
Ga0065704_102338002	3300005289	Switchgrass Rhizosphere	MPSRRVASKYIALAHINPIVCRRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIVEEKITADTEAI*
Ga0065705_101112589	3300005294	Switchgrass Rhizosphere	MRKSTMPVRRKVFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEEAEPQETGAI*
Ga0065705_101400072	3300005294	Switchgrass Rhizosphere	MPSRRVASKYIALAHINPIVCLRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIVEEKITADTEAI*
Ga0065707_104830632	3300005295	Switchgrass Rhizosphere	MPSRRVASKYIALAHINPIVCRRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0070676_104123422	3300005328	Miscanthus Rhizosphere	MPSRRVASKYIALAHINPIVCRRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITVDPEAI*
Ga0070670_1017021061	3300005331	Switchgrass Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEEAEPQETGA
Ga0066388_1012793022	3300005332	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCARCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0066388_1027234442	3300005332	Tropical Forest Soil	MPPRRQPFTYIPLAHIKPIVCSRCGEKARAVWHSPLPAGLKGEMLSFECAHCGKEMKMIVGETEPQPTG
Ga0070661_1017306841	3300005344	Corn Rhizosphere	RAVGSSVMPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLAGELRTFECEDCGKKTKMIVEEKITADTEAI*
Ga0070675_1009101331	3300005354	Miscanthus Rhizosphere	ASKYIALAHINPIVCLRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIVEEKITADTEAI*
Ga0070688_1003927763	3300005365	Switchgrass Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEPQPTGAISVQRR
Ga0070709_101235503	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPSRRVASKYIALAHINPIVCRRCGGKARAVWHSPLPAGLAGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0070686_1004179593	3300005544	Switchgrass Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEEAEPQETGAI*
Ga0066905_1000337062	3300005713	Tropical Forest Soil	MPPRRQLFTYIPLVHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECAHCGKEMKMIVEETEPQATGAI*
Ga0066905_1000744534	3300005713	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0066905_1001398053	3300005713	Tropical Forest Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECKHCGKEMKMIVEETEPQAIGAI*
Ga0066905_1020326481	3300005713	Tropical Forest Soil	MPPRRQLFTYIPLAYIKPIACSRCGENARAVWHSPLPAGLKGEMRTFECAHCGKEMKMIVEETEPQATGAI*
Ga0066903_1003251321	3300005764	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCRRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKMKMIIEEKITADTEAI*
Ga0066903_1006763493	3300005764	Tropical Forest Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRSFECAHCGKEMKMIVEETE
Ga0066903_1013614793	3300005764	Tropical Forest Soil	MPPRRQLFTYIPLAYIKPIVCPRCGEKARAVWHSPLPAGLKGEMRSFECAHCGKEMKMIVEETEPQPTGAI*
Ga0066903_1014531303	3300005764	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCARCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKI
Ga0066903_1045021741	3300005764	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSLLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0068863_1022364501	3300005841	Switchgrass Rhizosphere	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLAGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0081455_100787026	3300005937	Tabebuia Heterophylla Rhizosphere	MPPRRQLFTYIPLAHIKPIVCARCGEKARAVWHSPLPAGLKGEMRTFKCEHCGKDMKMIVEETEPQATGAI*
Ga0081455_102111303	3300005937	Tabebuia Heterophylla Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAIWHSPLPAGLKGEMRTFECEHCGKEMKMIVEEMEPQTTGVI*
Ga0075417_100042634	3300006049	Populus Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLEGEMRTFECDGCGKKMKLIVEEKEPEATV*
Ga0075417_105195592	3300006049	Populus Rhizosphere	MPVRRKAFTYIPLAHIKPIACPRCGEKARAVWQSPLPAGLKGDMCIFECEDCGKSVKMIVEETEPQAAGAI*
Ga0075425_1000811936	3300006854	Populus Rhizosphere	VLRGRRPVRDLRMRKSTMSVRRKAFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEETEPQAAGAN*
Ga0075425_1011628032	3300006854	Populus Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRNFECAHCGKEMKMIVEETEPQPTGAI*
Ga0068865_1014104212	3300006881	Miscanthus Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEP
Ga0075424_1009942021	3300006904	Populus Rhizosphere	MPVRRKVFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMI
Ga0075436_1004992752	3300006914	Populus Rhizosphere	MRKSTMPVRRKVFTYIPLAHIKPIICLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEEAEPQETGAI*
Ga0111539_116006021	3300009094	Populus Rhizosphere	MPVRRKVFTYIPLAHIKPIICLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEEAEPQETGAI*
Ga0111539_120407991	3300009094	Populus Rhizosphere	RQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRNFECAHCGKEMKMIVEETEPQPTGAI*
Ga0105245_115348211	3300009098	Miscanthus Rhizosphere	MPVRRKVFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEEAEPQETGAI*
Ga0075418_103131461	3300009100	Populus Rhizosphere	PSRTLGESGMPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLEGEMRTFECDGCGKKMKLIVEEKEPEATV*
Ga0075418_105347311	3300009100	Populus Rhizosphere	MSVRRKAFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEETEPQA
Ga0105243_107128072	3300009148	Miscanthus Rhizosphere	FTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEPQPTGAI*
Ga0111538_113071672	3300009156	Populus Rhizosphere	MSVRRKAFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEEAEPQETGAI*
Ga0075423_100944605	3300009162	Populus Rhizosphere	TVPVRRKAFTYIPIVHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEETEPQAAGAN*
Ga0075423_119361911	3300009162	Populus Rhizosphere	EPSRTLGESGMPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLEGEMRTFECDGCGKKMKLIVEEKEPEATV*
Ga0105242_123407711	3300009176	Miscanthus Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEPQPTGA
Ga0126384_100996902	3300010046	Tropical Forest Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEEKEPQATGAI*
Ga0126384_108196002	3300010046	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCPRCGGKARVVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0126382_100390336	3300010047	Tropical Forest Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEETEPQATGAI*
Ga0126370_103018052	3300010358	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCRRCGGKARAVSHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0126376_101236373	3300010359	Tropical Forest Soil	MPSRRVASKYIALAHINPIACPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0134125_113146531	3300010371	Terrestrial Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEPQP
Ga0126381_1034907031	3300010376	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTK
Ga0126375_105268532	3300012948	Tropical Forest Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRSFECAHCGKEMKMIVEETEPQPTGAI*
Ga0164301_105278542	3300012960	Soil	MPSRRVASKYIALAHINPIVCLRCGGKARAVWHSPLPVGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0164302_100189602	3300012961	Soil	MPVRRKVFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEETEPQPTGAI*
Ga0164302_101875732	3300012961	Soil	MPSRRVASKYIALAHINPIVCLRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0164302_118412371	3300012961	Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRSFECAHCGKEMKMIVEERSHNPPGRS
Ga0164307_102771631	3300012987	Soil	MPSRRVASKYIALAHINPIVCLRCGGKARAVWHSPLPVGLEGELRTFECEDCGKKTKMIVEEKITADTEAI*
Ga0164307_104203031	3300012987	Soil	MPVRRKVFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGQEMKMIVEEAEPQETGAI*
Ga0164305_109405471	3300012989	Soil	MPVRRKVFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEEA
Ga0163163_100777442	3300014325	Switchgrass Rhizosphere	MPSRRVASKYIALAHINPIVCPRRGGKARAVWHSPLPAGLAGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0157377_109436773	3300014745	Miscanthus Rhizosphere	RAVGSSVMPSRRVASKYIALAHINPIVCLRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIVEEKITADTEAI*
Ga0157377_113598451	3300014745	Miscanthus Rhizosphere	VFTYIPLAHIKPIVCQRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEEAEPQETGAI*
Ga0132258_136791562	3300015371	Arabidopsis Rhizosphere	MPVRRKVFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEEAEPQETGVI*
Ga0132257_1016651531	3300015373	Arabidopsis Rhizosphere	MPSRRVASKYIALAHINPIVCPRRGGKARAVWHSPLPAGLAGELRTFECEDCGKKTKMIVEEKITADTEAI*
Ga0132255_1018992501	3300015374	Arabidopsis Rhizosphere	IALAHINPIVCPRRGGKARAVWHSPLPAGLAGELRTFECEDCGKKTKMIIEEKITADTEAI*
Ga0182036_105400752	3300016270	Soil	SVMPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKMKMIIEEKITADTEAI
Ga0182033_100289481	3300016319	Soil	YIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKMKMIIEEKITADTEAI
Ga0182033_100951805	3300016319	Soil	YIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKMKMIIEEKITADTEAI
Ga0182033_109269611	3300016319	Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECE
Ga0182040_100411388	3300016387	Soil	VGGSVMPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKMKMIIEEKITADTEAI
Ga0182040_106860122	3300016387	Soil	VGGSVMPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLSAGLEGELRTFECEDCGKKMKMIIEEKITADTEAI
Ga0182037_100419751	3300016404	Soil	MPSRRVASKYIALAHIDPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKMKMIIEEKITADTEAI
Ga0163161_108840782	3300017792	Switchgrass Rhizosphere	MPSRRVASKYIALAHINPIVCLRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIVEEKITADTEAI
Ga0184608_100270512	3300018028	Groundwater Sediment	MPPRRQLFTYIPLAHIKPITCPRCGEKAHAVWHSPLPAGLKGEMRTFECEHCGKKLKLIVEETAPQTTVAI
Ga0184609_103435181	3300018076	Groundwater Sediment	MPSRRQPFTYISLAHIKPIVCPQCGEKARPIWQSPLPAGLKGEMRTFECDGCGKKMKLIVEEKEPQPTPGAI
Ga0126371_103708754	3300021560	Tropical Forest Soil	MPSRRVASKYIALAHINPIVCARCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIIEEKITADTEAI
Ga0222622_105128991	3300022756	Groundwater Sediment	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEETEPQETAAI
Ga0207657_104655843	3300025919	Corn Rhizosphere	EPSRTLGESAMPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEPQPTGAI
Ga0207659_103133843	3300025926	Miscanthus Rhizosphere	ASKYIALAHINPIVCLRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKTKMIVEEKITADTEAI
Ga0207677_121387852	3300026023	Miscanthus Rhizosphere	MPPRRQLFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFE
Ga0207641_107027361	3300026088	Switchgrass Rhizosphere	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLAGELRTFECEDCGKKTKMIIEEKITADTEAI
Ga0207683_118219052	3300026121	Miscanthus Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSSECAHCGKEMKMIVEEAEPQETGAI
Ga0209814_100419052	3300027873	Populus Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLEGEMRTFECDGCGKKMKLIVEEKEPEATV
Ga0209465_100873172	3300027874	Tropical Forest Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRSFECAHCGKEMKMIVEETEPQPTGAI
Ga0209382_100178264	3300027909	Populus Rhizosphere	MPPRRQLFTYIPLAHIKPIVCPRCGEKAPVWHSPLLPAGLEGEMRTFECDGCGKKMKLIVEEKEPEATV
Ga0307299_100258311	3300028793	Soil	MRKSTMPVRRKAFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEETEPQETGAI
Ga0307296_101140783	3300028819	Soil	SGMPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEETEPQETGAI
Ga0307308_100399814	3300028884	Soil	MPVRRKAFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLKGEMRTFECEHCGKEMKMIVEET
Ga0307304_104725021	3300028885	Soil	MPVRRKAFTYIPLAHIKPIVCLLCGEKARAVWHSPLTAGLKGEMRTFECE
Ga0310915_101097011	3300031573	Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKMKMIIEEKITADTEAI
Ga0306917_107283552	3300031719	Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKTKMI
Ga0307469_108015712	3300031720	Hardwood Forest Soil	MPSRRVASKYLALAHINPIVCPRCGEKARAVWYSPLPAGLKGEMRTFECEDCGEKTKLIVNEREPEVAETV
Ga0307469_111198772	3300031720	Hardwood Forest Soil	MRKSTTPVRRKAFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEETEPQETGAI
Ga0306919_103329992	3300031879	Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKMKMIIEEKITADTEAI
Ga0306925_105269792	3300031890	Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKTKMIIEEKITADTEAI
Ga0310916_104187821	3300031942	Soil	SRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKMKMIIEEKITADTEAI
Ga0310910_110284261	3300031946	Soil	AHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKMKMIIEEKITADTEAI
Ga0306922_103332481	3300032001	Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECEDCGKKMKMIIEE
Ga0306922_105970384	3300032001	Soil	KYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKTKMIIEEKITADTEAI
Ga0318533_113640111	3300032059	Soil	HINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKMKMIIEEKITADTEAI
Ga0307470_114296682	3300032174	Hardwood Forest Soil	MPPRRQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEPQETGAI
Ga0307472_1002320941	3300032205	Hardwood Forest Soil	MRKSTMPVRRKVFTYIPLAHIKPIVCLRCGEKARAVWHSPLPAGLEGEMRTFECEHCGKEMKMIVEEAEPQETGAI
Ga0310914_107309841	3300033289	Soil	MPSRRVASKYIALAHINPIVCPRCGGKARAVWHSPLPAGLEGELRTFECENCGKKMKMIIEEKITADTE
Ga0314783_181110_225_479	3300034662	Soil	VTDRTLAYFRGKRDAAATQLFTYIPLAHIKPIVCPRCGEKARAVWHSPLPAGLRGEMRSFECAHCGKEMKMIVEETEPQPTGAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084895

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences