Metagenome / Metatranscriptome Family F085271

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085271
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	56 residues
Representative Sequence	MESGYGERREIGCLAKVDFWKAKLAERFDPEGHKNPWRGVEAGGAFQSIGLERIR
Number of Associated Samples	92
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	30.63 %
% of genes near scaffold ends (potentially truncated)	9.91 %
% of genes from short scaffolds (< 2000 bps)	99.10 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (88.288 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.423 % of family members)
Environment Ontology (ENVO)	Unclassified (32.432 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.856 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00072	Response_reg	0.90
PF14246	TetR_C_7	0.90
PF03601	Cons_hypoth698	0.90
PF00416	Ribosomal_S13	0.90
PF01709	Transcrip_reg	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0099	Ribosomal protein S13	Translation, ribosomal structure and biogenesis [J]	0.90
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	0.90
COG2855	Uncharacterized membrane protein YadS, UPF0324 family	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
All Organisms	root	All Organisms	11.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
cellular organisms	root	All Organisms → cellular organisms	11.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	11.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	6.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.60 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.60 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.70 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.60 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	1.80 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.90 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.60 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.80 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.90 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.60 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.80 %
Weeksellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	0.90 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.60 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.80 %
Chryseobacterium group	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group	0.90 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.60 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.80 %
Chryseobacterium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	0.90 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.60 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.80 %
unclassified Chryseobacterium	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium	0.90 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.60 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.80 %
Chryseobacterium sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	0.90 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002652\|Ga0005484J37272_101228	Not Available	506	Open in IMG/M
3300002667\|Ga0005492J37276_102599	Not Available	506	Open in IMG/M
3300002667\|Ga0005492J37276_103332	Not Available	507	Open in IMG/M
3300003505\|JGIcombinedJ51221_10462150	Not Available	513	Open in IMG/M
3300003710\|Ga0008089_100336	Not Available	509	Open in IMG/M
3300004120\|Ga0058901_1004998	Not Available	504	Open in IMG/M
3300004134\|Ga0058906_1000308	Not Available	509	Open in IMG/M
3300004134\|Ga0058906_1017844	Not Available	503	Open in IMG/M
3300004139\|Ga0058897_10043528	Not Available	562	Open in IMG/M
3300004631\|Ga0058899_10094151	Not Available	516	Open in IMG/M
3300005459\|Ga0068867_101439905	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	640	Open in IMG/M
3300006854\|Ga0075425_101704101	Not Available	709	Open in IMG/M
3300006914\|Ga0075436_100949839	Not Available	644	Open in IMG/M
3300006934\|Ga0080680_1018017	Not Available	501	Open in IMG/M
3300007219\|Ga0075025_1010401	Not Available	504	Open in IMG/M
3300009090\|Ga0099827_11848801	Not Available	526	Open in IMG/M
3300009101\|Ga0105247_10580219	Not Available	829	Open in IMG/M
3300010060\|Ga0127425_109353	Not Available	501	Open in IMG/M
3300010065\|Ga0127435_124366	Not Available	502	Open in IMG/M
3300010087\|Ga0127492_1061782	Not Available	502	Open in IMG/M
3300010089\|Ga0127454_1026609	Not Available	505	Open in IMG/M
3300010098\|Ga0127463_1031144	Not Available	503	Open in IMG/M
3300010100\|Ga0127440_1079748	Not Available	531	Open in IMG/M
3300010125\|Ga0127443_1127306	Not Available	620	Open in IMG/M
3300010132\|Ga0127455_1123506	Not Available	500	Open in IMG/M
3300010146\|Ga0126320_1561493	Not Available	512	Open in IMG/M
3300010154\|Ga0127503_10500187	Not Available	501	Open in IMG/M
3300010854\|Ga0126360_1073494	Not Available	524	Open in IMG/M
3300010854\|Ga0126360_1085742	Not Available	507	Open in IMG/M
3300010855\|Ga0126355_1125536	Not Available	513	Open in IMG/M
3300010855\|Ga0126355_1146937	Not Available	504	Open in IMG/M
3300010856\|Ga0126358_1117122	Not Available	508	Open in IMG/M
3300010858\|Ga0126345_1001094	Not Available	501	Open in IMG/M
3300010859\|Ga0126352_1206246	Not Available	517	Open in IMG/M
3300010860\|Ga0126351_1122540	Not Available	513	Open in IMG/M
3300011120\|Ga0150983_10117195	Not Available	508	Open in IMG/M
3300011120\|Ga0150983_10303066	Not Available	502	Open in IMG/M
3300011120\|Ga0150983_11303067	Not Available	635	Open in IMG/M
3300011271\|Ga0137393_10260113	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1474	Open in IMG/M
3300012203\|Ga0137399_11701252	Not Available	519	Open in IMG/M
3300012362\|Ga0137361_10732663	Not Available	902	Open in IMG/M
3300012363\|Ga0137390_11974601	Not Available	510	Open in IMG/M
3300012388\|Ga0134031_1182766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300012925\|Ga0137419_10430165	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1036	Open in IMG/M
3300013308\|Ga0157375_12732282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	590	Open in IMG/M
3300015241\|Ga0137418_10595075	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	868	Open in IMG/M
3300019249\|Ga0184648_1148347	Not Available	506	Open in IMG/M
3300019259\|Ga0184646_1221640	Not Available	518	Open in IMG/M
3300021168\|Ga0210406_10316585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1266	Open in IMG/M
3300021170\|Ga0210400_10325872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1263	Open in IMG/M
3300021307\|Ga0179585_1161094	Not Available	514	Open in IMG/M
3300021858\|Ga0213852_1019008	Not Available	517	Open in IMG/M
3300021858\|Ga0213852_1194069	Not Available	501	Open in IMG/M
3300021858\|Ga0213852_1203609	Not Available	504	Open in IMG/M
3300021860\|Ga0213851_1145879	Not Available	507	Open in IMG/M
3300021861\|Ga0213853_10603660	Not Available	509	Open in IMG/M
3300021861\|Ga0213853_10968775	Not Available	513	Open in IMG/M
3300022498\|Ga0242644_1019391	Not Available	673	Open in IMG/M
3300022498\|Ga0242644_1046574	Not Available	503	Open in IMG/M
3300022501\|Ga0242645_1028143	Not Available	525	Open in IMG/M
3300022504\|Ga0242642_1102227	Not Available	502	Open in IMG/M
3300022505\|Ga0242647_1028826	Not Available	590	Open in IMG/M
3300022506\|Ga0242648_1059779	Not Available	597	Open in IMG/M
3300022506\|Ga0242648_1064163	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300022506\|Ga0242648_1100086	Not Available	505	Open in IMG/M
3300022507\|Ga0222729_1050053	Not Available	576	Open in IMG/M
3300022509\|Ga0242649_1012474	Not Available	924	Open in IMG/M
3300022509\|Ga0242649_1080927	Not Available	500	Open in IMG/M
3300022510\|Ga0242652_1020240	Not Available	709	Open in IMG/M
3300022511\|Ga0242651_1051002	Not Available	512	Open in IMG/M
3300022512\|Ga0242676_1053538	Not Available	508	Open in IMG/M
3300022513\|Ga0242667_1011829	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	809	Open in IMG/M
3300022522\|Ga0242659_1135987	Not Available	513	Open in IMG/M
3300022523\|Ga0242663_1121856	Not Available	538	Open in IMG/M
3300022525\|Ga0242656_1014695	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300022531\|Ga0242660_1175807	Not Available	575	Open in IMG/M
3300022531\|Ga0242660_1205033	Not Available	544	Open in IMG/M
3300022711\|Ga0242674_1034679	Not Available	646	Open in IMG/M
3300022712\|Ga0242653_1098522	Not Available	533	Open in IMG/M
3300022726\|Ga0242654_10008360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2174	Open in IMG/M
3300022726\|Ga0242654_10240739	Not Available	645	Open in IMG/M
3300023533\|Ga0247537_102376	Not Available	570	Open in IMG/M
3300028047\|Ga0209526_10393181	Not Available	921	Open in IMG/M
3300030830\|Ga0308205_1050797	Not Available	552	Open in IMG/M
3300030836\|Ga0265767_119931	Not Available	504	Open in IMG/M
3300030913\|Ga0265759_111199	Not Available	514	Open in IMG/M
3300030913\|Ga0265759_111895	Not Available	504	Open in IMG/M
3300030941\|Ga0265737_115731	Not Available	506	Open in IMG/M
3300030941\|Ga0265737_115882	Not Available	504	Open in IMG/M
3300031011\|Ga0265774_107191	Not Available	507	Open in IMG/M
3300031018\|Ga0265773_1047975	Not Available	505	Open in IMG/M
3300031096\|Ga0308193_1095801	Not Available	504	Open in IMG/M
3300031231\|Ga0170824_114922072	Not Available	670	Open in IMG/M
3300031231\|Ga0170824_115668059	Not Available	523	Open in IMG/M
3300031446\|Ga0170820_14631738	Not Available	505	Open in IMG/M
3300031474\|Ga0170818_112208368	Not Available	626	Open in IMG/M
3300031590\|Ga0307483_1040641	Not Available	511	Open in IMG/M
3300031663\|Ga0307484_119409	Not Available	508	Open in IMG/M
3300031677\|Ga0307480_1023446	Not Available	509	Open in IMG/M
3300031677\|Ga0307480_1024217	Not Available	504	Open in IMG/M
3300031753\|Ga0307477_11107910	Not Available	516	Open in IMG/M
3300031868\|Ga0316038_114354	Not Available	558	Open in IMG/M
3300031962\|Ga0307479_10637617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1047	Open in IMG/M
3300034448\|Ga0370540_18309	Not Available	502	Open in IMG/M
3300034479\|Ga0314785_016323	Not Available	579	Open in IMG/M
3300034643\|Ga0370545_175371	Not Available	502	Open in IMG/M
3300034644\|Ga0370548_140249	Not Available	516	Open in IMG/M
3300034659\|Ga0314780_207470	Not Available	515	Open in IMG/M
3300034662\|Ga0314783_183885	Not Available	502	Open in IMG/M
3300034663\|Ga0314784_168205	Not Available	508	Open in IMG/M
3300034681\|Ga0370546_098560	Not Available	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.50%
Host-Associated	Host-Associated	4.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.59%
Aquatic	Environmental → Aquatic	9.91%
Plants	Host-Associated → Plants	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.59%
Freshwater	Environmental → Aquatic → Freshwater	9.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.87%
Loam	Environmental → Terrestrial → Soil → Loam	11.71%
Sediment	Environmental → Aquatic → Freshwater → Sediment	8.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.60%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.71%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	8.11%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.80%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.21%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	7.21%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	6.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.60%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.80%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.80%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002652	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF133 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002667	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF141 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300003710	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004134	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF248 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006934	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A1 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007219	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300010060	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010065	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010087	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010089	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010098	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010125	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010854	Boreal forest soil eukaryotic communities from Alaska, USA - W4-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010855	Boreal forest soil eukaryotic communities from Alaska, USA - W1-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010856	Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012388	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022501	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022511	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023533	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030836	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030913	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030941	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031011	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031018	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031677	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031868	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA1 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300034448	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034479	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034663	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0005484J37272_1012281	3300002652	Forest Soil	MESGCGERREIGYFAKVDFWEAKLAKRFDPEGHKNPWRGAEAGGASRSIGLERIQ*
Ga0005492J37276_1025991	3300002667	Forest Soil	MDFGYGERREIGRFAKVDFWKAKLAERFDPEGYKNPWRGAEVSGAFQIVELERIR*
Ga0005492J37276_1033321	3300002667	Forest Soil	VAVVNKMESGCGERWEIGYFAKVDFWEAKLAERFDPEGHKNPWRGAEAGGASRSIGLERIQ*
JGIcombinedJ51221_104621501	3300003505	Forest Soil	MESGYGERREIGYFAKVDFWEAKLAERFDPEGHKNPWRGAEAGGASRYIGLERIQ*
Ga0008089_1003361	3300003710	Tropical Rainforest Soil	MESGHGERREIGCFVKVDFWKAKLAERFDPEGHKNPWRGVEASGAFWSAGLERIR*
Ga0058901_10049981	3300004120	Forest Soil	MESGYGERREIGRFAKVDLWKAKLAERFDPEGHKNPWRGAEVGGAFQNIGPERIR*
Ga0058906_10003081	3300004134	Forest Soil	VESGYGERKEIGRFAKVDFWKAKLAERFDPEGHKNPWRGAETGGAFQNIGLERIQ*
Ga0058906_10178441	3300004134	Forest Soil	MESGCGERREIGRIAKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQNIGLERIQ*
Ga0058897_100435281	3300004139	Forest Soil	MDSGYGERREIGWFAKMDFWKAKLAERFDPEGHKNPWRGAEVSGAFQNTGPERIR*
Ga0058899_100941512	3300004631	Forest Soil	VAVFIYVESGYGERREIGRFAMVDFWKAKLAVHFDPEGHKNPWRGVEAGGAFQSIGLERIR*
Ga0068867_1014399051	3300005459	Miscanthus Rhizosphere	MESGHGERREIGRLAQVDFQKAELVERFDPDGHKNPKRGAETGGAFWSIGLERIQ*
Ga0075425_1017041012	3300006854	Populus Rhizosphere	MESGCGERKEIGRNAKVGFRKAKPAERFDPEGHKNPRRGAEAGWAFRSIGLERIR*
Ga0075436_1009498392	3300006914	Populus Rhizosphere	VAIISNEKSCHGERREIGRLATVGFRKAEVAERYELEGHKNPQKGAEASEAFWNIGLERIR*
Ga0080680_10180172	3300006934	Tropical Rainforest Soil	MESGHGERREIGRLAQVDFWKAKPAERFDLEGHKNPQRGAEVGRAFRSIGLERIR*
Ga0075025_10104011	3300007219	Watersheds	MESGYGERREIGCLAKVDFREAKLAERFDPEGYKNPWRGAEAGGAFQSIGLERIQ*
Ga0099827_118488011	3300009090	Vadose Zone Soil	GERREIGRFAKVDLWKAKLAERFDPEGHKNPWRGAEASGAFQNIGPERIR*
Ga0105247_105802191	3300009101	Switchgrass Rhizosphere	VESGHGERREIGRLAKVDFQRAEPAERFDPEGHKKPRRGVEAGGALWSIGPERIR*
Ga0127425_1093531	3300010060	Grasslands Soil	MESGLGERREIGRLAEVSFWKAKPAEHCDPEGHKNPQWGVEAGGAFRSIGLERIR*
Ga0127435_1243661	3300010065	Grasslands Soil	MESGHGERKEIGRLAEVGFRGAEPAERFDPEGNKNPQRVAEAGKALWNIGL*
Ga0127492_10617821	3300010087	Grasslands Soil	MEFDHGERREIGRLAEVGFWEAELAEHFDPEGHKNPQRGVEAGGAFQSIGLERIR*
Ga0127454_10266091	3300010089	Grasslands Soil	MEFDHGERRESGRLAEVGFWEAELAEHFDPEGHKNPQRGVEAGGAFQSIGLERIR*
Ga0127463_10311441	3300010098	Grasslands Soil	MESGHGERKEIGRLAEVGFRGAEPAERFDPEGYKNPQRVAEAGKALWNIGL*
Ga0127440_10797481	3300010100	Grasslands Soil	SGNGERREIGRLAEVGFRGAEPAEHFDPEGHKNPPRGVEAGKALWNIGL*
Ga0127443_11273061	3300010125	Grasslands Soil	MESGLGERREIGRLAEVSLWKAKLAEHCDPEGHKNPQWGVEAGGAFRSIGLERIR*
Ga0127455_11235061	3300010132	Grasslands Soil	MESGNGERREIGRLAEVGFRGAEPAEHFDPEGHKNPQRGVEAGEALWNIGL*
Ga0126320_15614931	3300010146	Soil	MESGNGERKEIGRLAEAGFQGAEPVEHFDPEGHKNPQRGVETGKALWNIGL*
Ga0127503_105001871	3300010154	Soil	MESGHGERKEIGRLAEVGLQGAEPAEHFDPEGHKNPQRGVEAGKAFWNIGL*
Ga0126360_10734941	3300010854	Boreal Forest Soil	MESGHGEREGIGRRAQVGFWKAEPVERTDPDGHKNPEREAEAGKAFQSIGLERIR*
Ga0126360_10857421	3300010854	Boreal Forest Soil	MESGYGERRVIGCLAKVDFWKAKLVERFDPEGHKNPWRGAEAGGAFQSNGLERIR*
Ga0126355_11255361	3300010855	Boreal Forest Soil	MESGCGERRETGCFAKVDLWKAKLVERFDPEGHKNPWRGAETGGAFQNIGLERIR*
Ga0126355_11469372	3300010855	Boreal Forest Soil	MESGYGERREIGRFAKVDLWKAKLAERFDPEGHKNPWRGAEASGAFQNIGPERIR*
Ga0126358_11171221	3300010856	Boreal Forest Soil	MESFRGERKEIGCFAKVDLWKAKLAERFDPEGHKNPWRGAEVGGAFRSIGLERIQVKVRWISNK*
Ga0126345_10010942	3300010858	Boreal Forest Soil	MKSGCGERRETGCFAKVDLWKAKLVERFDPEGHKNPWRGAETGGAFQNIGLERIR*
Ga0126352_12062461	3300010859	Boreal Forest Soil	MESGCGERKVIGFFAKVDLWKAKLVERYDPEGHKNPWRGAEAGGAFQNIGLERIR*
Ga0126351_11225401	3300010860	Boreal Forest Soil	MESGHGERREIGRSAQVGFRKAELVEHYDPEGHKNPQRGVEAREAFRDIGLERIR*
Ga0150983_101171951	3300011120	Forest Soil	MESGYGERREIGCLAKVDFWKAKLAERFDPEGHKNPWRGVEAGGAFQSIGLERIR*
Ga0150983_103030661	3300011120	Forest Soil	MESGLGERREIGHFAKVDLWKAKLAERIDPEGHKKPWRGAEAGGAFQNIGLERIR*
Ga0150983_113030671	3300011120	Forest Soil	MESGGGERREIGCFAKVDFWKAKLAERFDPEGHKNPWRGVEAGGAFRSIGLERIR*
Ga0137393_102601132	3300011271	Vadose Zone Soil	LEFGCGERRENGRFAKVDLWKAKLAERFDPEGHKNPWRGAEASEAFQNIGPERIR*
Ga0137399_117012521	3300012203	Vadose Zone Soil	NNMDSGCGERREIGRFAKVDLWKAKLAERFDPEGHKNPWRGAEASGAFQNIGPERIR*
Ga0137361_107326631	3300012362	Vadose Zone Soil	MESGNGERREIGRLAEVGFRGAEPAEHFDPEGHKNPQRGVEAGKALWNIGL*
Ga0137390_119746011	3300012363	Vadose Zone Soil	VVVVINLESVHGERKEIGRFAKVDFWKAKLTERFDPEGNKNPWRGAEVGGAFQSIGLERIR*
Ga0134031_11827661	3300012388	Grasslands Soil	MESGHGEREEIGRFAKVSFWKAKPAEHGDPDGHKNPGRGVEAGWAFQSIGLERIR*
Ga0137419_104301652	3300012925	Vadose Zone Soil	MESGHGERREIGRLAEVSFWKAKLAEHRDPEGHKNPQRGVEAGGAFQSIGLERIRGRSGG
Ga0157375_127322821	3300013308	Miscanthus Rhizosphere	MESGYGERREIERIAKVDLQRAEPAERFDPEGHKNPQWGVEAGGALWSIGPERIR*
Ga0137418_105950751	3300015241	Vadose Zone Soil	MESGHGERREIGRLAEVSFWKAKLAEHRDPEGHKNPQRGVEAGGAFRNIGLERIR*
Ga0184648_11483471	3300019249	Groundwater Sediment	MESGCGERREIGRGAKVGFQKAGLVERYDPEGHKIPRRGAETGGAFWIIGLERIR
Ga0184646_12216401	3300019259	Groundwater Sediment	MESGFGERKEIGRLAEVGFQRAEPAVRFDPAGHKKPQWGVEAGKAIWSIGLERIR
Ga0210406_103165852	3300021168	Soil	MESGYGERREIGRFVKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQSIGPERIR
Ga0210400_103258722	3300021170	Soil	LIRGRFHYMESGYGERREIGRFVKVDFWKAKLAERFDPEGHKNPWRGAEVGGAFQNIGLERIQ
Ga0179585_11610942	3300021307	Vadose Zone Soil	VVVVINLESGHGERKEIGRFAKVDFWKAKLTERFDPEGNKNPWRGAEVGGAFQSIGLERI
Ga0213852_10190081	3300021858	Watersheds	MESGCGERREIGRIAKVDFWRAQSAERCDLEGHKNPQRGADVVLALWSVGPERIQVKVRRISNW
Ga0213852_11940692	3300021858	Watersheds	MDSGYGERREIGHFAKVDLWKAKLAERIDPEGHKNPWRGAEAGGAFQNIGLERIR
Ga0213852_12036092	3300021858	Watersheds	MEFGYGERREIGYFAKVDFWEAKLAERFDPEGHKNPWRGAEAGGASRNIGLERIQ
Ga0213851_11458791	3300021860	Watersheds	MDSGYGERREIGRFAKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQIVELERIR
Ga0213853_106036601	3300021861	Watersheds	MESGYGERREIGHFAKVDLWKAKLAERIDPEGHKNPWRGAEAGGAFQNIGLERIR
Ga0213853_109687751	3300021861	Watersheds	MDSGYGERREIGRFAKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQIIELERIR
Ga0242644_10193911	3300022498	Soil	VAGVNKMESSRGERREIGCFVKVDFRKAKVAERFDPEGHKNPWRGAEAGGAFRSIGLERI
Ga0242644_10465742	3300022498	Soil	MDSGYGERREIGRFVKVDFWKAKLAERFDPEGNKNPWRGAEVSGAFQIIGLERIR
Ga0242645_10281431	3300022501	Soil	MEPSRGERREIGCFVKVDFWKAKLAERFDPEGHKNPWRGAEAGGAIQSIGLERIR
Ga0242642_11022272	3300022504	Soil	VAVFIYMESGYGERREIGRFAKVDLWKAKLAERFDPEGHKNPWRGAEVGGAFQNIGPERI
Ga0242647_10288262	3300022505	Soil	MDSCYGEGREIGRFAKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQIIELERIR
Ga0242648_10597791	3300022506	Soil	MESGHGERREIGRLAEVSFWKAKLVEHCDPEGHKDPQRGVEAGAAFRSTGLERIR
Ga0242648_10641632	3300022506	Soil	MESGCGERREIGRIAKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQNIGLERIQ
Ga0242648_11000862	3300022506	Soil	MDSGYGERREIGRFAKVDFWRAKLAERFDPEGYKNPWRGAEVSGAFQIIELERIR
Ga0222729_10500532	3300022507	Soil	MESGYGERKEIGCLAKVDFWKAKLAERFDPEGHKNPWRGAEAGGAFWSIGLERIR
Ga0242649_10124741	3300022509	Soil	MIERDKMEPSRGERREIGCFVKVDFWKAKLAERFDPEGHKNPWRGAEAGGAIQSIGLERI
Ga0242649_10809271	3300022509	Soil	MESGHGERREIGRLAEVSFWKAKLAEHCDPEGHKDPQRGVEAGAAFRSTGLERIR
Ga0242652_10202402	3300022510	Soil	MDFGYGERREIGRFAKVDFWKAKLAERFDPEGYKNPWRGAEVSGAFQIVELERIR
Ga0242651_10510021	3300022511	Soil	MESGHGERREIGRSAQVGFQKAELVEHYEPEGHKNPQRGVEAREAFWDIGLERIR
Ga0242676_10535381	3300022512	Soil	RFHYMESGCGERREIGRIAKVDFWKAKLAERFDPEGHKNPWRGAEVGGAFQNIGLERIQ
Ga0242667_10118291	3300022513	Soil	MESGFGERREIGRFAKVDFWKAKLAERFDPEVHKNPWRGAEAGGAFWSIGLERIR
Ga0242659_11359872	3300022522	Soil	VAVFIYMESGYGERREIGRFVKVDFWKAKLAERFDPEGNKNPWRGAEVSGAFQIIGLERI
Ga0242663_11218561	3300022523	Soil	MESGYGERRGIGRFVKVDFRKAKLAERFDPEGHKNPWRGAEVSGAFQNIGLERIQ
Ga0242656_10146953	3300022525	Soil	MESGCGERREIGRIAKVDFWKAKLAERFDPEGHKNPWRGAEAGGAIQSIGLERIR
Ga0242660_11758071	3300022531	Soil	MESGYGERKEIGCLAKVDFWKAKLAERFDPEGHKNPWRGAEAGGAFCSIGLESIR
Ga0242660_12050331	3300022531	Soil	SSLKVESGHGEQREIGRLAKVDFQRAEPAERFDPEGHKKPRWGVEAGGALWSIGPERIR
Ga0242674_10346792	3300022711	Soil	LIRGRFHYMESGYGERREIGRFVKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQNIGLERIQ
Ga0242653_10985221	3300022712	Soil	TLIRGRFHYMESGYGERREIGRFVKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQSIGPERIR
Ga0242654_100083604	3300022726	Soil	RFHYMESGYGERREIGRFVKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQSIGLERIR
Ga0242654_102407392	3300022726	Soil	MESGYGERREIGRFVKVDFWKAKLAERFDPEGHKNPWRGAEAGGASRYIGLERIQ
Ga0247537_1023761	3300023533	Soil	MESGHGERREIGCFAKVDFWEAKLAERFDPEGYKKPWRGAEVGGAFQSIGPELIR
Ga0209526_103931811	3300028047	Forest Soil	MESGYGERREIGLFAKVGLWKAKLAERFDPEGHKNPWRGAEVSGAFQNIGPERIR
Ga0308205_10507971	3300030830	Soil	MESGNGERKEIGRLAEVGFRGAELAEHFDPEGHKNPQRGVEAGKALWNIGL
Ga0265767_1199312	3300030836	Soil	MESGHGERREIGCFAKVDLWEAKLAERFDPEGYKKPWRGAEVGGAFQSIGPELIR
Ga0265759_1111992	3300030913	Soil	MESGCGERREIGYFAKVDLWEAKLAERFDPEGHKNPWRGAEAGGASRSIGLERIQ
Ga0265759_1118952	3300030913	Soil	MESGYGERREIGRFAKVDLWKAKLAERFDPEGHKNPWRGAEVGGVFQNIGLERIQ
Ga0265737_1157311	3300030941	Soil	MDSGYGERKEIGRFVKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQIIGLERIR
Ga0265737_1158821	3300030941	Soil	VAGINKMESGCGERREIGRFAKVDFWDAKLAERFDPEGHKNPWRGAEAGGAFRSIGLERI
Ga0265774_1071911	3300031011	Soil	VAVVNKMESGCGERREIGYFAKVDLWEAKLAERFDPEGHKNPWRGAEAGGASRSIGLERI
Ga0265773_10479752	3300031018	Soil	VVVINKMESGHGERREIGCFAKVDFWEAKLAERFDPEGHKNPWRGAEAGGAFRSIGLERI
Ga0308193_10958011	3300031096	Soil	MESGHGERREIGRLAQVDFRKAKLAERFDLEGHKNPQRGAEVGGAFRSIGLEQIQ
Ga0170824_1149220721	3300031231	Forest Soil	MESGYGERREIGRFAKVDFWKAKLAERFDPEGHKNPWRGAEVGGVFQNIGLERIQ
Ga0170824_1156680591	3300031231	Forest Soil	MESGHGERREIGRLAQVDFRKAKLAERFDLEGHKNPQRGAEVGGAFWSIGLEQIQ
Ga0170820_146317381	3300031446	Forest Soil	MESGDGERREIGRLAQVDFRKAKLAERFDLEGHKNPQRGAEVGGAFWSIGLEQIQ
Ga0170818_1122083681	3300031474	Forest Soil	ESGYGERREIGRFVKVDFWKAKLAERFDPEGHKNPWRGAEVSGAFQSIGPERIR
Ga0307483_10406411	3300031590	Hardwood Forest Soil	MESGHGERREIGCFVKVDLWKAKLAERFDPEGHKNPWRGAEAGGAFQSIGLERIR
Ga0307484_1194092	3300031663	Hardwood Forest Soil	MERGYGERREIGYFAKVDFWEAKLAERFDPEGHKNPWRGAEAGGAFQSIGLERIR
Ga0307480_10234461	3300031677	Hardwood Forest Soil	MESGHGERKEIGRLAEVGFRGAEPAERFDPEGNKNPQRVAEAGKALWNIGL
Ga0307480_10242171	3300031677	Hardwood Forest Soil	MESGHGERREIGRLAQVDFQKAELVERFDPDGHKNPKRVAETGGAFWSIGLERIQ
Ga0307477_111079102	3300031753	Hardwood Forest Soil	MEFGYGERREIGYFAKVDFWEAKRAERFDPEGHKNPWRGAEAGGASRNIGLERIQ
Ga0316038_1143541	3300031868	Soil	VINKMESGHGERREIGCFAKVDFWEAKLAERFDPEGYKKPWRGAEVGGAFQSIGPELIR
Ga0307479_106376172	3300031962	Hardwood Forest Soil	MESGYGERREIGRFAKVDLWKAKLAERFDPEGHKNPWRGAEVSGAFQIIGLERIR
Ga0370540_18309_68_235	3300034448	Soil	MESGCRERKEIGRRAKVSFWKAELVERYDPDGHKNPEREAEAGEAFQSIGLERIR
Ga0314785_016323_1_168	3300034479	Soil	KWSGYGERREIGRLAQAAFRRAEPAERFDLEGHKNPQKGAQAGTALWNIGLERIR
Ga0370545_175371_273_440	3300034643	Soil	MESGHGERREIGRLAQVDFQKAELVERFDPEGHKNPQRGAEAGGAFWSIGLERIQ
Ga0370548_140249_287_442	3300034644	Soil	MESGHGERKEIGRLAEVGFRGAEPAERFDPEGNKNPQRGAEAGKALWNIGL
Ga0314780_207470_73_240	3300034659	Soil	MESGHGERREIGRLAQVDFQKAELVERFDPDGHKNPKRGAETGGAFWSIGLERIQ
Ga0314783_183885_62_229	3300034662	Soil	MESGHGEREEIGRQAKVSFRKANLAEHYDPDGHKNPGRGVEAGEAFQSIGLERIR
Ga0314784_168205_68_235	3300034663	Soil	MESGYGERREIELIAKVDLQRAEPAERFDPEGHKNPQWGVEAGGALWSIGPERIR
Ga0370546_098560_272_439	3300034681	Soil	MESGHGERREIGRLAQVDFRKAKLAERFDLEGHKNPQRGAEAGRAFWSIGLEQIQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085271

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences