Metagenome Family F085275

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085275
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	54 residues
Representative Sequence	IRFTSLNFRFCTKGTDMREHVLLFCLLGLVLAATIILVAAPGAVTWALALIE
Number of Associated Samples	77
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	4.50 %
% of genes near scaffold ends (potentially truncated)	93.69 %
% of genes from short scaffolds (< 2000 bps)	92.79 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.658 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.441 % of family members)
Environment Ontology (ENVO)	Unclassified (57.658 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.450 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.50% β-sheet: 0.00% Coil/Unstructured: 42.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01068	DNA_ligase_A_M	2.70
PF04392	ABC_sub_bind	1.80
PF04519	Bactofilin	1.80
PF00072	Response_reg	0.90
PF12850	Metallophos_2	0.90
PF05711	TylF	0.90
PF01381	HTH_3	0.90
PF01258	zf-dskA_traR	0.90
PF00034	Cytochrom_C	0.90
PF00078	RVT_1	0.90
PF08450	SGL	0.90
PF01019	G_glu_transpept	0.90
PF00226	DnaJ	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.70
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.70
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	1.80
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.80
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.90
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.90
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.90
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
All Organisms	root	All Organisms	42.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
cellular organisms	root	All Organisms → cellular organisms	42.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.63 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	6.31 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.41 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.80 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.41 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.80 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.90 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.50 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.80 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.90 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.50 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.80 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.90 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.41 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.80 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.90 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.90 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459014\|G1P06HT02JC420	Not Available	558	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1008067	Not Available	1778	Open in IMG/M
3300005332\|Ga0066388_106063898	Not Available	610	Open in IMG/M
3300005332\|Ga0066388_106717632	Not Available	579	Open in IMG/M
3300005332\|Ga0066388_108433280	Not Available	513	Open in IMG/M
3300005332\|Ga0066388_108790915	Not Available	501	Open in IMG/M
3300005468\|Ga0070707_100962775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300005468\|Ga0070707_101186099	Not Available	730	Open in IMG/M
3300005713\|Ga0066905_100590694	Not Available	938	Open in IMG/M
3300005713\|Ga0066905_101657380	Not Available	586	Open in IMG/M
3300005764\|Ga0066903_102859817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	936	Open in IMG/M
3300005764\|Ga0066903_106302353	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	619	Open in IMG/M
3300005764\|Ga0066903_107437276	Not Available	565	Open in IMG/M
3300005764\|Ga0066903_107603902	Not Available	558	Open in IMG/M
3300005764\|Ga0066903_108153357	Not Available	536	Open in IMG/M
3300005764\|Ga0066903_108637124	Not Available	518	Open in IMG/M
3300006854\|Ga0075425_100491557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1413	Open in IMG/M
3300009137\|Ga0066709_102862325	Not Available	638	Open in IMG/M
3300009792\|Ga0126374_10646085	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300010043\|Ga0126380_10210790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1309	Open in IMG/M
3300010043\|Ga0126380_10265578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1198	Open in IMG/M
3300010043\|Ga0126380_10453431	Not Available	970	Open in IMG/M
3300010046\|Ga0126384_10608698	Not Available	957	Open in IMG/M
3300010046\|Ga0126384_11282344	Not Available	679	Open in IMG/M
3300010047\|Ga0126382_11133316	Not Available	696	Open in IMG/M
3300010047\|Ga0126382_11568205	Not Available	609	Open in IMG/M
3300010048\|Ga0126373_11970193	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	647	Open in IMG/M
3300010358\|Ga0126370_10351046	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300010361\|Ga0126378_11108749	Not Available	892	Open in IMG/M
3300010361\|Ga0126378_12544765	Not Available	585	Open in IMG/M
3300010366\|Ga0126379_11298425	Not Available	834	Open in IMG/M
3300010366\|Ga0126379_13768402	Not Available	508	Open in IMG/M
3300010376\|Ga0126381_101513266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	970	Open in IMG/M
3300010376\|Ga0126381_102047011	Not Available	825	Open in IMG/M
3300010398\|Ga0126383_10472358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1308	Open in IMG/M
3300010398\|Ga0126383_12079651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	655	Open in IMG/M
3300010398\|Ga0126383_12625254	Not Available	587	Open in IMG/M
3300012205\|Ga0137362_11329322	Not Available	604	Open in IMG/M
3300012948\|Ga0126375_11142314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	644	Open in IMG/M
3300012948\|Ga0126375_11321171	Not Available	607	Open in IMG/M
3300012971\|Ga0126369_12682575	Not Available	582	Open in IMG/M
3300013306\|Ga0163162_10146013	All Organisms → cellular organisms → Bacteria → Proteobacteria	2482	Open in IMG/M
3300016270\|Ga0182036_10330390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1169	Open in IMG/M
3300016294\|Ga0182041_10257719	Not Available	1423	Open in IMG/M
3300016319\|Ga0182033_10688013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	894	Open in IMG/M
3300016319\|Ga0182033_11180780	Not Available	685	Open in IMG/M
3300016341\|Ga0182035_10505602	Not Available	1032	Open in IMG/M
3300016357\|Ga0182032_11006378	Not Available	712	Open in IMG/M
3300016387\|Ga0182040_10210079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1437	Open in IMG/M
3300016404\|Ga0182037_10082908	All Organisms → cellular organisms → Bacteria → Proteobacteria	2257	Open in IMG/M
3300016422\|Ga0182039_10334523	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300016422\|Ga0182039_10675279	Not Available	909	Open in IMG/M
3300016445\|Ga0182038_12039853	Not Available	520	Open in IMG/M
3300025915\|Ga0207693_10064498	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2869	Open in IMG/M
3300025922\|Ga0207646_11232090	Not Available	655	Open in IMG/M
3300025939\|Ga0207665_10345398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1122	Open in IMG/M
3300026899\|Ga0209326_1005940	Not Available	912	Open in IMG/M
3300031543\|Ga0318516_10088992	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1731	Open in IMG/M
3300031543\|Ga0318516_10162757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1283	Open in IMG/M
3300031545\|Ga0318541_10443896	Not Available	725	Open in IMG/M
3300031545\|Ga0318541_10695912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300031545\|Ga0318541_10795130	Not Available	528	Open in IMG/M
3300031546\|Ga0318538_10244220	Not Available	964	Open in IMG/M
3300031573\|Ga0310915_11078943	Not Available	558	Open in IMG/M
3300031640\|Ga0318555_10288718	Not Available	887	Open in IMG/M
3300031679\|Ga0318561_10623522	Not Available	593	Open in IMG/M
3300031682\|Ga0318560_10288698	Not Available	883	Open in IMG/M
3300031723\|Ga0318493_10124258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1316	Open in IMG/M
3300031736\|Ga0318501_10428006	Not Available	717	Open in IMG/M
3300031744\|Ga0306918_10125285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1867	Open in IMG/M
3300031744\|Ga0306918_11328273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300031747\|Ga0318502_10958111	Not Available	521	Open in IMG/M
3300031763\|Ga0318537_10382940	Not Available	519	Open in IMG/M
3300031781\|Ga0318547_10583092	Not Available	693	Open in IMG/M
3300031792\|Ga0318529_10580199	Not Available	520	Open in IMG/M
3300031793\|Ga0318548_10098516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1397	Open in IMG/M
3300031793\|Ga0318548_10174757	Not Available	1051	Open in IMG/M
3300031794\|Ga0318503_10024311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1734	Open in IMG/M
3300031795\|Ga0318557_10143420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300031819\|Ga0318568_10114008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1629	Open in IMG/M
3300031819\|Ga0318568_10223613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1163	Open in IMG/M
3300031832\|Ga0318499_10060464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1428	Open in IMG/M
3300031845\|Ga0318511_10267392	Not Available	769	Open in IMG/M
3300031859\|Ga0318527_10299092	Not Available	685	Open in IMG/M
3300031879\|Ga0306919_10041743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2979	Open in IMG/M
3300031890\|Ga0306925_11892368	Not Available	567	Open in IMG/M
3300031894\|Ga0318522_10056208	Not Available	1400	Open in IMG/M
3300031941\|Ga0310912_10538597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300031945\|Ga0310913_10542463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	825	Open in IMG/M
3300031946\|Ga0310910_10088588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2274	Open in IMG/M
3300031946\|Ga0310910_10500008	Not Available	965	Open in IMG/M
3300031946\|Ga0310910_11587311	Not Available	500	Open in IMG/M
3300031947\|Ga0310909_10209189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1623	Open in IMG/M
3300031981\|Ga0318531_10118718	Not Available	1173	Open in IMG/M
3300031981\|Ga0318531_10325321	Not Available	695	Open in IMG/M
3300032001\|Ga0306922_10565701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1207	Open in IMG/M
3300032010\|Ga0318569_10216853	Not Available	887	Open in IMG/M
3300032041\|Ga0318549_10374432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	642	Open in IMG/M
3300032042\|Ga0318545_10200309	Not Available	714	Open in IMG/M
3300032052\|Ga0318506_10009799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3155	Open in IMG/M
3300032059\|Ga0318533_10176531	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300032059\|Ga0318533_10316713	Not Available	1133	Open in IMG/M
3300032060\|Ga0318505_10556323	Not Available	540	Open in IMG/M
3300032064\|Ga0318510_10416823	Not Available	573	Open in IMG/M
3300032065\|Ga0318513_10020901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	2732	Open in IMG/M
3300032180\|Ga0307471_101012516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	998	Open in IMG/M
3300032261\|Ga0306920_100343455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2221	Open in IMG/M
3300032261\|Ga0306920_103719158	Not Available	559	Open in IMG/M
3300033289\|Ga0310914_10743841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	877	Open in IMG/M
3300033289\|Ga0310914_11366603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300033290\|Ga0318519_10710404	Not Available	615	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.30%
Host-Associated	Host-Associated	1.80%
Engineered	Engineered	0.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.30%
Plants	Host-Associated → Plants	1.80%
Solid Waste	Engineered → Solid Waste	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.90%
Grass	Engineered → Solid Waste → Grass	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.08%
Loam	Environmental → Terrestrial → Soil → Loam	16.22%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%
Composting	Engineered → Solid Waste → Grass → Composting	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	59.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026899	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2PV_01703910	2170459014	Switchgrass, Maize And Mischanthus Litter	GSAELVTVYALSFCFCTKGTDMREHVLLFCLAGVSVRHSDDQYSVTAPGAVTWALALIE
AP72_2010_repI_A01DRAFT_10080671	3300000579	Forest Soil	FTSLNLCSCTKGTDMREQVLLFCLLGLVLAITIMLVIEPGAVTWAVGLIE*
Ga0066388_1060638981	3300005332	Tropical Forest Soil	SWRTAIWLSRACHRFTTPNFCFCTKGTDVREHVLLFCLLGLVLAGTIILVIAPGAVTWALALIE*
Ga0066388_1067176321	3300005332	Tropical Forest Soil	RWLSRACHRCTALSFCFCTKSTDMRERMLLFCLLGLVLTVTIILVIAPWAVTGTLALVE*
Ga0066388_1084332801	3300005332	Tropical Forest Soil	LSRACHRFTTPNFCFCTKGTDVREHVLLFCLLGLVLAGTTILVIAPGAVTWALALIE*
Ga0066388_1087909151	3300005332	Tropical Forest Soil	MWLRRARQRFTTPNFCFCTKGTDMRERVLLFCLLGLMLAAVIMLAVAPGAVTWALALIE*
Ga0070707_1009627752	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	FCFCTKGTDMREHVLLFCLLGLVVIATTILVIAPGVVTWALALIE*
Ga0070707_1011860991	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LNFCFCTKGTDMREHVLLFCLLGLVVVATVILVIAPGAVTWALALID*
Ga0066905_1005906942	3300005713	Tropical Forest Soil	FTSRNICFCTKGTDMREHVLLFCLLGLVLTATIILVIAPGAVTWALALFE*
Ga0066905_1016573802	3300005713	Tropical Forest Soil	IRFTSLNFRFCTKGTDMREHVLLFCLLGLVLAATIILVAAPGAVTWALALIE*
Ga0066903_1028598171	3300005764	Tropical Forest Soil	TSLNFCFCTKGTAMHERLLLFCLLGLVLAATIILVIDPGAVTWALALIE*
Ga0066903_1063023533	3300005764	Tropical Forest Soil	TALSFCLCTKSTDMHERVLLFCLLGLVLTATIILVIAPGALTWALAFIE*
Ga0066903_1074372761	3300005764	Tropical Forest Soil	APSASLISVLTFRFCTEGTDVRERVLLFCLLGLVLTATILLVIAPGAVTWALALIE*
Ga0066903_1076039021	3300005764	Tropical Forest Soil	FTVLNFCFCTKGTDMREHVLLFCLLGLVLTATIILAIAPVAVTWALSLID*
Ga0066903_1081533572	3300005764	Tropical Forest Soil	RTAIWLSRVCHRFTTPNFCFCTRGTDMREHVFLFCLLGLVLTAAIILMTAPGAVTWALALIE*
Ga0066903_1086371242	3300005764	Tropical Forest Soil	ARQFIRFTSLNFCFCTEGTDMREHVLLFCLLGLVLIATIMLVTAPGAVTWALALIE*
Ga0075425_1004915572	3300006854	Populus Rhizosphere	FIRFTSLNFCFCTEATDMREHVLLFCLLGLVLTATIMLVAAPGAVTWALALIE*
Ga0066709_1028623251	3300009137	Grasslands Soil	QSRQFIRSTSLNFCFCTKGTDMREHVLLFCLLGLVVIATTILVIAPGAVTWALALIE*
Ga0126374_106460853	3300009792	Tropical Forest Soil	WHHRRFTSLNFCFCTRGTDVREHALLFCLLGLVLTATIILVAAPGAVTWALALIE*
Ga0126380_102107903	3300010043	Tropical Forest Soil	MWLRRARQRFTTPNFCFCTKGTDMREQVLLFCLLGLVLTAAIMLAVAPGAVTWALALIEP
Ga0126380_102655781	3300010043	Tropical Forest Soil	LNFCFCTEGTDMREHVLLFCLLALVLTATIILAIAPGAVTWALSLID*
Ga0126380_104534313	3300010043	Tropical Forest Soil	RFTSLNFCFCTEGTDMREHVLLFCLLGLVLIATIILVTAPGAVIWALALIE*
Ga0126384_106086981	3300010046	Tropical Forest Soil	PNFCFCTKGTDMREHVLLFCLLGLVLAATIILVVAPGAVTWALALIE*
Ga0126384_112823441	3300010046	Tropical Forest Soil	WLRRASQFIQFTSLSFCFCTKGTDMRERVLLFCLLGLVLTATMILVAAPGAVTWALALIER*
Ga0126382_111333161	3300010047	Tropical Forest Soil	QSIRFTSLNFRFCTKGTDMREYVLLFCLLGLVLTTTIILVIAPGAVTWALALIE*
Ga0126382_115682052	3300010047	Tropical Forest Soil	MWLRRARQRFTTPNFCFCTKGTDMREQVLLFCLLGLVLTAAIMLAVAPGAVTWALALIE*
Ga0126373_119701931	3300010048	Tropical Forest Soil	SFCFCTKGVNMHEHVLLSCLLSLVLTATIILVTAPGAVTWALALIE*
Ga0126370_103510465	3300010358	Tropical Forest Soil	HHRRFTSLNFCFCTRGTDVREHALLFCLLGLVLTATIILVAAPGAVTWALALIE*
Ga0126378_111087493	3300010361	Tropical Forest Soil	TSLNFCFCTEGTDMREHVLLFCLLGLVLIATIILVTAPGAVIWALALIE*
Ga0126378_125447651	3300010361	Tropical Forest Soil	PWRRPRRARHRFSVLNFCFCTKGTDVREHVLLFCLLGLVLTATIILVIAPGAVTWALALIE*
Ga0126379_112984251	3300010366	Tropical Forest Soil	LNFRFCTKDTDMREHVLLLCLLGLVLAATVMLVTAPGAVTWALALIE*
Ga0126379_137684021	3300010366	Tropical Forest Soil	TALSFCSCTESTDMRERMLLFCLLGLVLTATIILVTAPGAVTWALALIE*
Ga0126381_1015132661	3300010376	Tropical Forest Soil	RFTSLSFCLCTKGTDMREHVLLFCLLGLVLTATIILVTAPGAVTWALALIE*
Ga0126381_1020470111	3300010376	Tropical Forest Soil	SLNFCFCTEGTDMREHVLLFCLLGLVLIATIILVTAPGAVIWALALIE*
Ga0126383_104723584	3300010398	Tropical Forest Soil	WLSRPCHRFTALSFCFCFKGTEMREHVLLFCLLGLVLAATIILMTAPGAVTWALALIE*
Ga0126383_120796511	3300010398	Tropical Forest Soil	SRVCHRFTTPNFCFCTKGTDMREHVLLFCLLGLVLTATIVLAIAPGAVTWALSFID*
Ga0126383_126252541	3300010398	Tropical Forest Soil	MWLRRARQRFTTPNFCFCTKGTDMRERVLLFCLLGLMLAAVMMLAVAPGAVTWALALIE*
Ga0137362_113293221	3300012205	Vadose Zone Soil	WTAIWLLRARHRFTTPNFCFCTKGVNMREHVLLFCLLGLVLTATIILVAAPGAVTWALALIE*
Ga0126375_111423142	3300012948	Tropical Forest Soil	RARHTRSTSLNFCLRTKGTDMREHVLLFCLLGLVLTAAIMLVSAPGAVTWALSLIE*
Ga0126375_113211712	3300012948	Tropical Forest Soil	TTLSFCFCTKGTDMRERVLLFCLLGLVFTATIILVTAPGAMTWTLALIE*
Ga0126369_126825752	3300012971	Tropical Forest Soil	GRWLSRARQFIRSTSLNFRFCTKRMREHVLLFCLLGLVLTATIILVTAPEAVTWVLSLIPDNPAQAPKLALRPP*
Ga0163162_101460131	3300013306	Switchgrass Rhizosphere	ALSFCFCTKGADMREHVLLFCLLGLVLTATIILVTAPGAVTWALALIE*
Ga0182036_103303902	3300016270	Soil	RSRPARSASFSTSFTANGTDLREHVLLFCLLGLVLTATIVLVTAPGAVTWAPSLIE
Ga0182041_102577191	3300016294	Soil	TSLNFRFCTKGTDMRERVLLCCLLGLVLTATIILVTEPGAVTWAVALE
Ga0182033_106880131	3300016319	Soil	PIWLRRARHRFTILNFCFCTKGTDVREHVLLFCLLGLALTATIILVIAPGAVTWALALIE
Ga0182033_111807802	3300016319	Soil	TAIWLSRACHRFTTPNFCFCTKGTDVREHVLLFCLLGLVLAGTIILVIAPGAVTWALG
Ga0182035_105056022	3300016341	Soil	RQLIRFTSLNFRFRTKGTDMRERVLLFCLLGLVLTATILLVTAPGAVTWALALIE
Ga0182032_110063782	3300016357	Soil	TTPNFCFCTKGTDVREHVLLFCLLGLVLAGTIILVIAPGAVTWALALIE
Ga0182040_102100791	3300016387	Soil	VLWLRQARFTRFTSLNFCFCTKGTAMRERVLLFCLLGLVLTATIILVTAPAAVTSALALI
Ga0182037_100829081	3300016404	Soil	FIRFTSLNFRFCTKGTDMREHVLLFCLLGLVLTATIILVTAPGAVTWALAHIE
Ga0182039_103345231	3300016422	Soil	IWLRRLRRPNRSTSPNFCFCTKGTDMREHMLLFCLLGLVLTAAIILAIAPGAVTWALSLI
Ga0182039_106752793	3300016422	Soil	SRARQFIRFTSLNFRFCTKGTDMRERVLLFCLLGLVLTATIILVTAPGAVTWAMALIE
Ga0182038_120398531	3300016445	Soil	RSTSPNFCFCTKGTDMREHVLLFCLLGLVLTAAIMLAIAPGAVTWALSLFD
Ga0207693_100644984	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	CRGGGWLNRVCRRCTVLSFSFSTKSTDMRERMLLFCLLGLVLAATIILVTAPGAVTWALALIE
Ga0207646_112320902	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	QFIRSTSLNFCFCTKGTDMREHVLLFCLLGLVVIATTILVIAPGAVTWALALIE
Ga0207665_103453982	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	PNRSTSLNIGFCTKGTDMREHVLLFCLLALLLTATIILVTAPGAVTWALSLIE
Ga0209326_10059402	3300026899	Forest Soil	MRSTSLNFCFCTKGTDMREQVLLFCLLGLVLTATIMLVAAPGAVTWALALIE
Ga0318516_100889921	3300031543	Soil	RGRWLRRASQFIRSTSLNICFCTRGTDMRERVLLFCLLGLVLTVTMILVIAPGAVTWALALIE
Ga0318516_101627573	3300031543	Soil	FCFCTKGHDMREHVLIFCLLGLVLIAAIMLLIAPGEVTWALSLIEGPY
Ga0318541_104438962	3300031545	Soil	SRSTSPNFCFCTKGADMRERVLLFCLLGLVLTAAIMLAIAPGAVTWALSLFD
Ga0318541_106959123	3300031545	Soil	FTALSFCFCTKGTDMRELLLFCLLGLVLTATIILVTAPGAVTWALAHIE
Ga0318541_107951302	3300031545	Soil	FIRFTSLNFCFCTEGTDMREHVLLFCLLGLVLTATIILAIAPGAVTWALSLID
Ga0318538_102442201	3300031546	Soil	NFCFCTKGPDMRERVLLFCLLGLVLTATILLVTAPGAVTWALALIE
Ga0310915_110789431	3300031573	Soil	WLSRARQFIRFTSLSFCLCTKGTDMREHVLLFCLLGLVLTATIILVMAPGAVTWALSLID
Ga0318555_102887183	3300031640	Soil	FTVLTFRFCTEGTDMRERVLLFCLLGLVLIATILLVTAPAAVTWALALIE
Ga0318561_106235221	3300031679	Soil	LSRQFIRFISLNFRFCTKRTDMREHVLRFCLLGLVPTAAIIMVIAPGAVTWALSLIE
Ga0318560_102886983	3300031682	Soil	RSTSPNFCFCTKGADMRERVLLFCLLGLVLTAAIMLAIAPEAVTWALSLFD
Ga0318493_101242581	3300031723	Soil	WLSRARQCIRSTSLTFRFCTRGTDMRERVLLFCLLGLVLTVTMILVIAPGAVTWALALID
Ga0318501_104280061	3300031736	Soil	FTVLTFRFCTEGTDMRERVLLFCLLGLVLTATILLVIAPGAVTWALALIE
Ga0306918_101252854	3300031744	Soil	GLWLRQARQLIRFTSLNFRFRTKGTDMRERVLLFCLLGLVLTATILLVTAPGAVTWALALIE
Ga0306918_113282732	3300031744	Soil	GRWLSRQFIRFTSLNFRFCTKGTGMRERVLLFCLLGLVLTATLILVTAPGAVTWALSLIE
Ga0318502_109581112	3300031747	Soil	IYPVYGLNFCFCTKGTDMRERMLLFCLLGLVLTATIILVIAPEAVTWALSLIE
Ga0318537_103829402	3300031763	Soil	PNFCFCTKGTDVREHVLLFCLLGLVLAGTIILVIAPGAVTWALALIE
Ga0318547_105830921	3300031781	Soil	RQFIRFTGLNFCFCTKGTDMRERMLLFCLLGLVLTATIILVIAPEAVTWALSLIE
Ga0318529_105801992	3300031792	Soil	FTTPNFCFCTKGTDVRDHVLLFCLLGLVLTAVIMLAVAPGAVTWALALIE
Ga0318548_100985161	3300031793	Soil	PNFCFCTKGTDMREHVLLFCLLGLVLTAAIMLAIAPGAVTWALSLFD
Ga0318548_101747571	3300031793	Soil	TVLTFRFCTEGTDMRERVLLFCLLGLVLTATILLVIAPGAVTWALALIE
Ga0318503_100243113	3300031794	Soil	SLNICFCTRGTDMRERVLLFCLLGLVLTVTMILVIAPGAVTWALALID
Ga0318557_101434203	3300031795	Soil	WLSRQFIRFISLNFRFCTKRTDMREHVLRFCLLGLVPTAAIIMVIAPGAVTWALSLIE
Ga0318568_101140084	3300031819	Soil	TVLTFRFCTEGTDMRERVLLFCLLGLVLIATILLVTAPAAVTWALALIE
Ga0318568_102236134	3300031819	Soil	APNFCFCTKGTDMREHLLPFCLLGLVLTATIILVIAPGAVTWALALIE
Ga0318499_100604641	3300031832	Soil	SRACHRFTTPNFCFCTKGTDVREHVLLFCLLGLVLAGTIILVIAPGAVTWALALIE
Ga0318511_102673923	3300031845	Soil	RRPNRSTSPNFCFCTKGTDMREHMLLFCLLGLVLTAAIILAIAPGAVTWALSLID
Ga0318527_102990921	3300031859	Soil	FIRSTSLNICFCTRGTDMRERVLLFCLLGLVLTVTMILVIAPGAVTWALALID
Ga0306919_100417437	3300031879	Soil	GRWLRRASQFIRSTSLNICFCTRGTDMRERVLLFCLLGLVLTVTMILVIAPGAVTWALALIE
Ga0306925_118923681	3300031890	Soil	HRFTAPNFCFCTKGTDMREHLLPFCLLGLVLTATIILVIAPGAVTWALALIE
Ga0318522_100562084	3300031894	Soil	SPNFCFCTKGTDMREHMLLFCLLGLVLTAAIILAIAPGAVTWALSLID
Ga0310912_105385973	3300031941	Soil	SLNFCFCTEGTDMREHVLLFCLLGLVLIATIILVTAPGTVIWALALIE
Ga0310913_105424631	3300031945	Soil	FTSLNFCFCTEGTDMREHVLLFCLLGLVLIATIILVTAPGTVIWALALIE
Ga0310910_100885881	3300031946	Soil	IWLRPLRRPNRSTSPNFCFCTKGTDMREHVLLFCLLGLVLTAAIILAIAPGAVTWALSLI
Ga0310910_105000082	3300031946	Soil	SLNFCFCTKGTAKRERVLLFCLLGLVLTATILLVTAPGAVTWALALIE
Ga0310910_115873111	3300031946	Soil	LNFRFCTERHARAVLLFCLLGLVLTATIILVIAPGAVTWALALIE
Ga0310909_102091894	3300031947	Soil	RARRLRPARQFIRFTGLNFCFCTKGTDMRERMLLFCLLGLVLTATIILVVAPEAVTWALSLIE
Ga0318531_101187181	3300031981	Soil	SRSTSPNFCFCTKGADMRERVLLFCLLGLVLTAAIMLAIAPEAVTWALSLFD
Ga0318531_103253212	3300031981	Soil	IWLRRLRRPNRSTSPNFCFCTKGTDMREHVLLFCLLGLVLTAAIMLAIAPGAVTWALSLF
Ga0306922_105657011	3300032001	Soil	SLNFCFCTKGTDMREHVLLFCLLGLVLTATILLATAPGAVTWALSLIE
Ga0318569_102168533	3300032010	Soil	TSPNFCFCTKGADMRERVLLFCLLGLVLTAAIMLAIAPEAVTWALSLFD
Ga0318549_103744321	3300032041	Soil	VLWLRQARFTRFTSLNFCFCTKGTAMRERVLLFCLLGLVLTATILLVTEPGAVTWALALI
Ga0318545_102003093	3300032042	Soil	PNFCFCTKGTDMREHMLLFCLLGLVLTAAIILAIAPGAVTWALSLID
Ga0318506_100097996	3300032052	Soil	TSLNFCFCTEGTDMREHVLLFCLLGLVLIATIMLVTAPGAVTWALALIE
Ga0318533_101765311	3300032059	Soil	PSRSTSPNFCFCTKGADMRERVLLFCLLGLVLTAAIMLAIAPGAVTWALSLFD
Ga0318533_103167133	3300032059	Soil	RARQFIRFTSLNFRFCTKGTDMRERVLLFCLLGLVLTATIILVTAPGAVTWAVALE
Ga0318505_105563232	3300032060	Soil	ARFTRFTSLNFCFCTKGTAMRERVLLFCLLGLVLTATIILVTAPAAVTSALALIE
Ga0318510_104168232	3300032064	Soil	RARQFIRFTSLNFRFCTKGTDMREHVLLFCLLGLVLTATIILVTAPGAVTWALALIE
Ga0318513_100209016	3300032065	Soil	FCFCTKGTDVREHVLLFCLLGLVLAGTIILVIAPGAVTWALALIE
Ga0307471_1010125161	3300032180	Hardwood Forest Soil	RVLTSLNYCFCTEATDMGEHMLLFCLLGLVLTATIILVAAPGAVTWALAFIG
Ga0306920_1003434551	3300032261	Soil	RQARQLIRFTSLNFRFRTKGTDMRERVLLFCLLGLVLTATILLVTAPGAVTWALALIE
Ga0306920_1037191581	3300032261	Soil	TRFTSLNFCFCTKGTAMRERVLLFCLLGLVLTATILLVTAPGAVTWALALIE
Ga0310914_107438413	3300033289	Soil	IRFTSLNFCFCTEGTDMREHVLLFCLLGLVLIATIILVTAPGTVIWALALIE
Ga0310914_113666031	3300033289	Soil	HIRSTSLNFRFCTKDTDMREHVLLFCLLGLVLTTTIILVTAPGAVTWALALIE
Ga0318519_107104042	3300033290	Soil	LWLRQARFTRFTSLNFCFCTKGTAKRERVLLFCLLGLVLTATILLVTAPGAVTWALALIE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085275

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences