NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F085289

Metagenome / Metatranscriptome Family F085289

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F085289
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 53 residues
Representative Sequence MSAPEWVAALGDRDPSVAIALAAITRAAGPNDVAGFGDLVMSYREAHLAC
Number of Associated Samples 95
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 85.59 %
% of genes near scaffold ends (potentially truncated) 98.20 %
% of genes from short scaffolds (< 2000 bps) 98.20 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (97.297 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.820 % of family members)
Environment Ontology (ENVO) Unclassified
(29.730 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(36.036 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.44%    β-sheet: 0.00%    Coil/Unstructured: 52.56%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF06835LptC 2.70
PF01180DHO_dh 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG0042tRNA-dihydrouridine synthaseTranslation, ribosomal structure and biogenesis [J] 0.90
COG0069Glutamate synthase domain 2Amino acid transport and metabolism [E] 0.90
COG0167Dihydroorotate dehydrogenaseNucleotide transport and metabolism [F] 0.90
COG1304FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomeraseEnergy production and conversion [C] 0.90
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 0.90

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.30 %
UnclassifiedrootN/A2.70 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000891|JGI10214J12806_10406578All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1580Open in IMG/M
3300002568|C688J35102_119168174All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes648Open in IMG/M
3300003990|Ga0055455_10146210All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes721Open in IMG/M
3300004156|Ga0062589_101051566All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes765Open in IMG/M
3300005093|Ga0062594_100746476All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes893Open in IMG/M
3300005334|Ga0068869_101661834All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes569Open in IMG/M
3300005444|Ga0070694_100823260All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes762Open in IMG/M
3300005444|Ga0070694_101644283All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes545Open in IMG/M
3300005468|Ga0070707_101531790All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes634Open in IMG/M
3300005471|Ga0070698_100528684All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1118Open in IMG/M
3300005536|Ga0070697_100867286All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes800Open in IMG/M
3300005536|Ga0070697_101425179All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium619Open in IMG/M
3300005547|Ga0070693_100912083All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes659Open in IMG/M
3300005547|Ga0070693_101561193All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes517Open in IMG/M
3300005558|Ga0066698_10977002All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium539Open in IMG/M
3300005562|Ga0058697_10616975All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium568Open in IMG/M
3300005577|Ga0068857_100583075All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1056Open in IMG/M
3300005577|Ga0068857_101539384All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes648Open in IMG/M
3300005618|Ga0068864_100861382All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes893Open in IMG/M
3300005718|Ga0068866_11408180All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes510Open in IMG/M
3300005844|Ga0068862_101410137All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium700Open in IMG/M
3300005879|Ga0075295_1026833All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes703Open in IMG/M
3300006847|Ga0075431_101013241All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes797Open in IMG/M
3300006852|Ga0075433_11316138All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes626Open in IMG/M
3300006854|Ga0075425_100870038All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1031Open in IMG/M
3300006871|Ga0075434_100407488All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1381Open in IMG/M
3300006876|Ga0079217_10307202All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes883Open in IMG/M
3300006918|Ga0079216_11523685All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes561Open in IMG/M
3300007004|Ga0079218_10977671All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes844Open in IMG/M
3300009094|Ga0111539_11224315All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes872Open in IMG/M
3300009100|Ga0075418_10303859All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1701Open in IMG/M
3300009100|Ga0075418_12540980All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes559Open in IMG/M
3300009148|Ga0105243_10542109All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1110Open in IMG/M
3300009157|Ga0105092_10922274Not Available516Open in IMG/M
3300009162|Ga0075423_10648913All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1113Open in IMG/M
3300009168|Ga0105104_10411872All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes753Open in IMG/M
3300009174|Ga0105241_11570955All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes635Open in IMG/M
3300009822|Ga0105066_1095018All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes655Open in IMG/M
3300010038|Ga0126315_10808211All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes618Open in IMG/M
3300010045|Ga0126311_11784947All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes521Open in IMG/M
3300010166|Ga0126306_11635458All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes537Open in IMG/M
3300010371|Ga0134125_12640383All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes546Open in IMG/M
3300010396|Ga0134126_10215441All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium2289Open in IMG/M
3300010396|Ga0134126_12864259All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium522Open in IMG/M
3300010403|Ga0134123_11735198All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes676Open in IMG/M
3300012205|Ga0137362_11019264All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium705Open in IMG/M
3300012684|Ga0136614_10603268All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes782Open in IMG/M
3300012684|Ga0136614_10709303All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes708Open in IMG/M
3300012911|Ga0157301_10283832All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes597Open in IMG/M
3300012917|Ga0137395_10264436All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1211Open in IMG/M
3300012929|Ga0137404_10667739All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes938Open in IMG/M
3300012929|Ga0137404_10850616All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes830Open in IMG/M
3300012955|Ga0164298_10213785All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1137Open in IMG/M
3300012957|Ga0164303_10671740All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes694Open in IMG/M
3300012985|Ga0164308_12271732Not Available505Open in IMG/M
3300012986|Ga0164304_10395302All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes980Open in IMG/M
3300012989|Ga0164305_10468986All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes983Open in IMG/M
3300015372|Ga0132256_100653364All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1167Open in IMG/M
3300015372|Ga0132256_102810362All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes585Open in IMG/M
3300015374|Ga0132255_102827022All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes742Open in IMG/M
3300017997|Ga0184610_1165495All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes730Open in IMG/M
3300018061|Ga0184619_10178015All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes975Open in IMG/M
3300018071|Ga0184618_10300643All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes683Open in IMG/M
3300018079|Ga0184627_10326856All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes803Open in IMG/M
3300018422|Ga0190265_12125247All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes665Open in IMG/M
3300019259|Ga0184646_1087878All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes601Open in IMG/M
3300019269|Ga0184644_1700456All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes783Open in IMG/M
3300020202|Ga0196964_10684166All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes508Open in IMG/M
3300021445|Ga0182009_10237119All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes901Open in IMG/M
3300025922|Ga0207646_11035711All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes724Open in IMG/M
3300025925|Ga0207650_11070619All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium686Open in IMG/M
3300025933|Ga0207706_10232533All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1612Open in IMG/M
3300025941|Ga0207711_10841399All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes854Open in IMG/M
3300025945|Ga0207679_11471445All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes625Open in IMG/M
3300025988|Ga0208141_1024440All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes570Open in IMG/M
3300025998|Ga0208651_1008932All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes780Open in IMG/M
3300026004|Ga0208416_1002596All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1351Open in IMG/M
3300026905|Ga0207516_1015040All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium621Open in IMG/M
3300027364|Ga0209967_1042130All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi694Open in IMG/M
3300027787|Ga0209074_10443671Not Available553Open in IMG/M
3300027907|Ga0207428_11198656All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium528Open in IMG/M
3300028711|Ga0307293_10069637All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1105Open in IMG/M
3300028713|Ga0307303_10048369All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes895Open in IMG/M
3300028719|Ga0307301_10046425All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1331Open in IMG/M
3300028755|Ga0307316_10383823All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes519Open in IMG/M
3300028803|Ga0307281_10177817All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes757Open in IMG/M
3300028811|Ga0307292_10161234All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes910Open in IMG/M
3300028814|Ga0307302_10144091All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1152Open in IMG/M
3300028814|Ga0307302_10620023All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes538Open in IMG/M
3300028819|Ga0307296_10563727All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes623Open in IMG/M
3300028824|Ga0307310_10073904All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1471Open in IMG/M
3300028824|Ga0307310_10304443All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes776Open in IMG/M
3300028881|Ga0307277_10224421All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes827Open in IMG/M
3300031152|Ga0307501_10040478All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1002Open in IMG/M
3300031548|Ga0307408_100161183All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1782Open in IMG/M
3300031548|Ga0307408_100785145All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes863Open in IMG/M
3300031716|Ga0310813_10965392All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium775Open in IMG/M
3300031731|Ga0307405_11015844All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes708Open in IMG/M
3300031852|Ga0307410_10207221All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1500Open in IMG/M
3300031852|Ga0307410_10954862All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes737Open in IMG/M
3300031901|Ga0307406_11924537All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes527Open in IMG/M
3300031903|Ga0307407_11130068All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes610Open in IMG/M
3300031995|Ga0307409_100008045All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis6361Open in IMG/M
3300031995|Ga0307409_100155105All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium1994Open in IMG/M
3300031995|Ga0307409_100226601All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1691Open in IMG/M
3300031995|Ga0307409_101467285All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes709Open in IMG/M
3300032004|Ga0307414_10827664All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes845Open in IMG/M
3300032159|Ga0268251_10610446All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes503Open in IMG/M
3300032179|Ga0310889_10124506All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1127Open in IMG/M
3300032211|Ga0310896_10540144All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium644Open in IMG/M
3300032421|Ga0310812_10338821All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes672Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil19.82%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere10.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere8.11%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.11%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.60%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.60%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.60%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.60%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil3.60%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil2.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.70%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.80%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.80%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.80%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.80%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave1.80%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.90%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.90%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.90%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil0.90%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.90%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.90%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.90%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003990Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005879Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009822Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300019259Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019269Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020202Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10EnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025988Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101 (SPAdes)EnvironmentalOpen in IMG/M
3300025998Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204 (SPAdes)EnvironmentalOpen in IMG/M
3300026004Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302 (SPAdes)EnvironmentalOpen in IMG/M
3300026905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027364Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028713Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300031152Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_SEnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032159Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)Host-AssociatedOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10214J12806_1040657813300000891SoilVSTHEWVAALGDRDPSVAIALAAITRAAGPSDTVAFTELVMSYREAHLACYQAIGNTKEQEITGDEIRAHLARSV
C688J35102_11916817413300002568SoilMTAPEWVSALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREAYLACYQ
Ga0055455_1014621023300003990Natural And Restored WetlandsMSAPEWIAALGDRDPSVAIALAAITRAAGPTDTVPLGDLVMSYREAHLACYQAIGNAKEQEITGDEIRDHLGRSVLPRL
Ga0062589_10105156613300004156SoilMSPAEWIRALGDRDPSVAIALAAIARAAEASDLVMFGDLVMAYREAHIAVYRALP
Ga0062594_10074647623300005093SoilMSAPEWIATLGDRDPSVPIALAAITRAAGASDTVDFGDLVMSYREAHIACHR
Ga0068869_10166183413300005334Miscanthus RhizosphereMSPAEWIRALGDRDPSVPIALAAIARAAGLSDLVEFSDLVMGYREAHIAVYRA
Ga0070694_10082326023300005444Corn, Switchgrass And Miscanthus RhizosphereMTAPEWVSALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREAYLACYQQ
Ga0070694_10164428313300005444Corn, Switchgrass And Miscanthus RhizosphereVSAPEWVAALGDRDPSVAIALAAITRAAGLNDMAPFADLVMSYREAHLACYQGIGNAQEQEITGDEVRDHLRNSV
Ga0070707_10153179023300005468Corn, Switchgrass And Miscanthus RhizosphereMSAHEWIAALGDRDPSVAIALAAITRAAGPSDTVSFADLVMSYRE
Ga0070698_10052868423300005471Corn, Switchgrass And Miscanthus RhizosphereMSTFEWIGALGDRDPSVAIALAAITRAAGPSDTVSFADLVMS
Ga0070697_10086728613300005536Corn, Switchgrass And Miscanthus RhizosphereMTAPAAPEWVAALGDRDPSVPIALAAIVRAAGPSDSIAFSDLVLGYREA
Ga0070697_10142517913300005536Corn, Switchgrass And Miscanthus RhizosphereVSAPEWVAALGDRDPSVAISLAAITRAAGPGDTAPFGELVMSYREAHLACYQAIGNAQEQEITGDEVRDHL
Ga0070693_10091208313300005547Corn, Switchgrass And Miscanthus RhizosphereMTAPEWISSLGDRDPSVAIALAAITKAAGPGDVCAFADLVMSYREAHLACYHGIGIVHEPEITG
Ga0070693_10156119313300005547Corn, Switchgrass And Miscanthus RhizosphereVTAPEWIAALGDRDPSVAIALAAITRSAGPSDVVPFGDLLMAYREAHLACYQAIGN
Ga0066698_1097700213300005558SoilVSAPEWVAALGDRDPSVAISLAAITRAAGPGDTAPFGELVMSYREAHLACYQAIGNTQ
Ga0058697_1061697513300005562AgaveMSPAEWIRALGDRDPSVPIALAAIARAAAASDLVAFGDLVMAYREAHIAVY
Ga0068857_10058307523300005577Corn RhizosphereMSPAEWIRALGDRDPSVPIALAAIARAAGLSDLVEFSDLVMGYREAHIAVYRALPGHRPLPGPGQSEITG
Ga0068857_10153938413300005577Corn RhizosphereVSPAEWISALGDRDPSVPIALAAITRAAGAADTVDFADLVMTYREAHIAC
Ga0068864_10086138223300005618Switchgrass RhizosphereMSPAEWIRALGDRDPSVPIALAAIARAAGSSDLVEFSDLV
Ga0068866_1140818023300005718Miscanthus RhizosphereMSAPEWIATLGDRDPSVPIALAAITRAAGASDTVEFGDLVMSYREAHIACHRPLNGPAQ
Ga0068862_10141013713300005844Switchgrass RhizosphereMSPAEWIRALGDRDPSVPIALAAIARAAGLSDLVEFSDLVMGY
Ga0075295_102683313300005879Rice Paddy SoilMSTPDWIVTLGDRDPSVAIALAAITHAAGAEPKVSFGDLLMSYREAHLACYQGLGQN
Ga0075431_10101324113300006847Populus RhizosphereVTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVH
Ga0075433_1131613823300006852Populus RhizosphereMTAPEWISSLGDRDPSVAIALAAITRAAGPGDVCAFADLVMTYREAHLACYQGIGNALEQ
Ga0075425_10087003823300006854Populus RhizosphereMSPAEWIRALGDRDPSVAIALAAIARAAEASDLVMFGDLVMAYREAHIAVYRALPGPGQT
Ga0075434_10040748813300006871Populus RhizosphereMTAPEWISALSDRDPSVGVALAAITRAAGPGDVCAFADLVMTYREAHLACYQ
Ga0079217_1030720223300006876Agricultural SoilMSAPEWIATLGDRDPSVPIALAAITRAAGASDLVDFADLVMSYREAHIACDRAL
Ga0079216_1152368513300006918Agricultural SoilMTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDL
Ga0079218_1097767113300007004Agricultural SoilMIAAPEWVAALGDRDPSVPIGLAAIVRAAGPTETIAFSDLVHS
Ga0111539_1122431513300009094Populus RhizosphereMTAPEWVSALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYRE
Ga0075418_1030385933300009100Populus RhizosphereMSAPEWIATLGDRDPSVPIALAAITRAAGASDTVDFGDLVMSYREAHIACHRPLNGPAQVEITGD
Ga0075418_1254098013300009100Populus RhizosphereMSAPEWIAPLGDRDPSVPIALAAITRAAAATDTVDFGDLVMSYREAHIA
Ga0105243_1054210923300009148Miscanthus RhizosphereMTAPEWVSALGDRDPSVPIGLAAIVRAAGPTDSIAFADLVHSYREAY
Ga0105092_1092227423300009157Freshwater SedimentMSAPEWIAPLGDRDPSVPIALAAITRAAGATDTVDFGDLVMSYREAHIAGHRPRNGPAQV
Ga0075423_1064891313300009162Populus RhizosphereMTAPEWISSLGDRDPSVAIALAAITKAAGPCDMCAFDDLVMTYREAHLACYQGIGVAQEPEITGD
Ga0105104_1041187223300009168Freshwater SedimentMSAPEWIATLGDRDPSVPIALAAITRAAGASDTVDFGDLVMSYREAHIACHRPLNGPAQ
Ga0105241_1157095523300009174Corn RhizosphereMTAPEWVSALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREA
Ga0105066_109501823300009822Groundwater SandMSAPEWITTLGDRDPSVPIALAAITRAAGASDLVDFGDLVMSYREAHIACDR
Ga0126315_1080821113300010038Serpentine SoilVSTHEWVAALGDRDPSVAIALAAITRAAGPSDTVAFTELVMSYREAH
Ga0126311_1178494713300010045Serpentine SoilMSHEWIAALGDRDPSVAIALAAITRVAGPSDTVSFADLVMSYREAHLACYQAIGNAKEQ
Ga0126306_1163545823300010166Serpentine SoilMSAPEWVASLGDRDPSVAIALAAITRTAGPNDVASFSDLIMGYREAHLACYQALGAPKEQEITGDEIR
Ga0134125_1264038313300010371Terrestrial SoilMSAPEWVAALGDRDPSVPIALAAVTRAAGPGDVAAFADLLMSYREAHLACYQAIGNAK
Ga0134126_1021544113300010396Terrestrial SoilVTAPEWIAALGDRDPSVAIALAAITRSAGPSDVVPFGDLLMAYREAHL
Ga0134126_1286425913300010396Terrestrial SoilMSPAEWIRALGDRDPSVPIALAAIARAAGLSDLVEFSDLVMGYREAHIAVYRALPGHRPL
Ga0134123_1173519823300010403Terrestrial SoilMTAPEWVSALGDRDPSVPIGLAAIVRAAGPTDSIAFSDL
Ga0137362_1101926423300012205Vadose Zone SoilVSAPEWVAALGDRDPSVAISLAALTRAAGPADTAPFGELVMSYREAHLACY
Ga0136614_1060326823300012684Polar Desert SandMTAAPEWVAALVDRDPSVPIGLAAIVRAAGPTETIAFSDLVHSYREAYL
Ga0136614_1070930323300012684Polar Desert SandVSAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREAYLA
Ga0157301_1028383213300012911SoilMSAPEWIATLGDRDPSVPIARAAITRAAGASDTVDFGELVMSYREAHIACHRPLNGPAQV
Ga0137395_1026443623300012917Vadose Zone SoilVSAPEWVAALGDRDPSVAISLAAITRAAGPEDTAPFGELVMSY
Ga0137404_1066773913300012929Vadose Zone SoilMSQPEWIAGLGDRDPSVPIALAAITRAAGPTDTVGFSDLVMSYREAHLACYADLVGLGDQEI
Ga0137404_1085061613300012929Vadose Zone SoilVSAPEWVAALGDRDPSVAISLAAITRAAGPADTAPFGELVMSYREAHLACYQ
Ga0164298_1021378513300012955SoilMTAPEWISSLGDRDPSVAIALAAITKAAGPGDVCGFADLVMSYREAHLACYQGIGVAQEP
Ga0164303_1067174023300012957SoilMTAPEWISSLGDRDPSVAIALAAITRAAGPGDVSAFADLVMTYREAHLACYQGIGNALEQ
Ga0164308_1227173223300012985SoilMTAPEWISSLGDRDPSVAIALAAITKAAGPGDVCGFADLVMSYREAHLACYQGIGVAQEPEITGDEVRDHLRGS
Ga0164304_1039530213300012986SoilMTAPEWISSLGDRDPSVAIALAAITRAAGPGDVCAFADLVMTYREAH
Ga0164305_1046898623300012989SoilMSAPEWVAALGDRDPSVAIALAAITRAAGPNDVAGFGDLVMSYREAHLAC
Ga0132256_10065336413300015372Arabidopsis RhizosphereMSPAEWIRALGDRDPSVAIALAAIARAAEASDLVMFGDLVMAYREAHIAVYRALPGPGQTEITGDI
Ga0132256_10281036223300015372Arabidopsis RhizosphereMSAPEWIATLGDRDPSVPIALAAITRAAGASDTVDFGDLVMS
Ga0132255_10282702213300015374Arabidopsis RhizosphereMTAPEWISALGDRDPSVGVALAAITRAAGPGDVCAFADLVMTYREAHLACYQGLPSAQQEITGDEV
Ga0184610_116549523300017997Groundwater SedimentMTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREAYLACYQPTGDADQEVSGD
Ga0184619_1017801513300018061Groundwater SedimentVTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDL
Ga0184618_1030064313300018071Groundwater SedimentVTAPAAPEWVAALGDRDPSVPIALAAIVRAAGPSDSIAFSDLV
Ga0184627_1032685623300018079Groundwater SedimentMMTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREAYLACYQPTGDADQEVSGD
Ga0190265_1212524713300018422SoilMTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIPFSDLVHSYREAYLACYQPTGDA
Ga0184646_108787823300019259Groundwater SedimentMTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREAYLACYQ
Ga0184644_170045623300019269Groundwater SedimentMTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREAYLACYQPTGDADQEVGATSEIASSIVP
Ga0196964_1068416613300020202SoilMTAPEWVAALGDRDPSVPLGLAAIVRAAGPGDSIAFSD
Ga0182009_1023711913300021445SoilMTAPEWVSSLGDRDPSVAIALAAITKAAGPGDVCAFSDLVMTYREAHLACYHGIGITQ
Ga0207646_1103571123300025922Corn, Switchgrass And Miscanthus RhizosphereMSAHEWIAALGDRDPSVAIALAAITRAAGPSDTVSFADLVMSYREAHLACYQAIGNAKEQEIT
Ga0207650_1107061913300025925Switchgrass RhizosphereMSPAEWIRALGDRDPSVPIALAAIARAAGSSDLVEFSDLVMGYREAHIAVYRALPGHRPLGPRAERDHR
Ga0207706_1023253333300025933Corn RhizosphereMTAPEWVSALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYR
Ga0207711_1084139923300025941Switchgrass RhizosphereVSSRDWIAALGERDPSVPIALAAIVRAAGPSDVAA
Ga0207679_1147144513300025945Corn RhizosphereMTAPEWISSLGDRDPSVAIALAAITRAAGPGDVCAFADLVMTYREAHLACYQGIGNA
Ga0208141_102444013300025988Rice Paddy SoilMSTPDWIVTLGDRDPSVAIALAAITHAAGAEPKVSFGDLLMSYREAHLACYQ
Ga0208651_100893213300025998Rice Paddy SoilMSTPDWIVTLGDRDPSVAIALAAITHAAGAEPKVSFGDLLMSYREAHLACYQGLGQNDQ
Ga0208416_100259613300026004Rice Paddy SoilMSTPDWIVTLGDRDPSVAIALAAITHAAGAEPKVSFGDLLMSYREAHLACYQGLGQNDQEIS
Ga0207516_101504013300026905SoilMSPAEWIRALGDRDPSVPIALAAIARAAGSSDLVEFSDLVMGYREAHIAVY
Ga0209967_104213013300027364Arabidopsis Thaliana RhizosphereMSPAEWIRALGDRDPSVPIALAAIARAAGSSDLVEFSDLVMGYREAHIAVYRALP
Ga0209074_1044367123300027787Agricultural SoilMTAPEWVSSLGDRDPSVAIALAAITKAAGPGDVCAFSDLVMTYREAHLACYHGIGITQEPEISGDEVRD
Ga0207428_1119865613300027907Populus RhizosphereMSPAEWIRALGDRDPSVPIALAAIARAAGLSDLVEFSDLVMGYREAHIAVY
Ga0307293_1006963713300028711SoilMTAPAAPEWVAALGDRDPSVPIALAAIVRAAGPSDSIAFSDLVL
Ga0307303_1004836913300028713SoilVTAPAAPEWVAALGDRDPSVPIALAAIVRAAGPSDSIAFSDLVLGYREA
Ga0307301_1004642523300028719SoilMSTFEWIGALGDRDPSVAIALAAITRAAGPSDTVSFADLIM
Ga0307316_1038382323300028755SoilMSTFEWIGALGDRDPSVAIALAAITRAAGPSDTVSFADLVMSYREAHLACYQAIGNAKEQEITGDEIRDHLGRSVLPR
Ga0307281_1017781723300028803SoilMSAPEWIGGLGDRDPSVAIALAAITRAAGPSDTVSFADLVMSYREAHLACYQAIGNAKEQEITGDEI
Ga0307292_1016123413300028811SoilMSQPEWIAGLGDRDPSVPIALAAITRAAGPADTIAF
Ga0307302_1014409123300028814SoilVTAPAAPEWVAALGDRDPSVPIALAAIVRAAGPSDS
Ga0307302_1062002313300028814SoilMTAPAAPEWVAALGDRDPSVPIALAAIVRAAGPSDSIAF
Ga0307296_1056372723300028819SoilMTAPEWVAALGDRDPSVPIGLAAIVRAAGPTDSIAFSDLVHSYREAYLACYQPTGDADQE
Ga0307310_1007390423300028824SoilMSTAKPMSTPEWVAALGDRDPSVPIGLAAIVRAAGPSE
Ga0307310_1030444323300028824SoilMTATAPEWVAALGDRDPSVPISLAAIVRAAGPSESIAFSDLVLGYR
Ga0307277_1022442123300028881SoilMSTFEWIGALGDRDPSVAIALAAITRAAGPSDTVSFADLIMSYREAHLACYQAIGNAKEQEITGDEIRDHLGRSVL
Ga0307501_1004047823300031152SoilMSTFEWIGALGDRDPSVAIALAAITRAAGPSDTVSFADLVMSYREAHLACYEAIGNAKEQ
Ga0307408_10016118313300031548RhizosphereMSAHEWIAALGDRDPSVAIALAAITRVAGPSDTVSF
Ga0307408_10078514523300031548RhizosphereMTAAPEWVAALGDRDPSVPIGLAAIVRAAGPSDSIAFADLVHSYR
Ga0310813_1096539213300031716SoilMSPAEWIRALGDRDPSVPIALAAIARAAGSSDLVEFSDLVMGYREAHIAVYRALPGHRPLPGPGQSEIT
Ga0307405_1101584423300031731RhizosphereMTAPEWVAALGDRDPSVPIGLAAIVRAAGPGDSIAFSDLVHSYRAAYLAC
Ga0307410_1020722123300031852RhizosphereMTAPEWVAALGDRDPSVPIGLAAIVRAAGPGDSIAFSDLVHSYRA
Ga0307410_1095486213300031852RhizosphereVSTHEWVAALGDRDPSVAIALAAITRAAGPSDTVAFTE
Ga0307406_1192453723300031901RhizosphereVSTHEWVAALGDRDPSVAIALAAVTRAAGPSDTVAFTELVMSYREAHLACYQAIGNTKEQEITGDEIRAHLARSVL
Ga0307407_1113006823300031903RhizosphereVSTHEWVAALGDRDPSVAIALAAITRAAGPSDTVAF
Ga0307409_10000804583300031995RhizosphereMSAPEWIATLGDRDPSVPIALAAITRAAGASDTVDFGDLVMSYREAHIACHRPLDGPVQVEI
Ga0307409_10015510533300031995RhizosphereVNTAEWIHALGDRDPSVPIALAAVTRAAGQSDAVDFDDLVMTYR
Ga0307409_10022660133300031995RhizosphereMSAPEWVAVLGDRDPSVPIGLAAIVRAAGPSDSIAFSDLVHSYREAYLACYQQLGEA
Ga0307409_10146728513300031995RhizosphereVTATAPEWVSALGDRDPSVPIALAAIVRAAGPSDSIAFSDLVLGYREAY
Ga0307414_1082766423300032004RhizosphereVTGPEWIGALGDRDPSVAIGLAAITRAAGPNDTAAFDDLVMTYREAHLACYHAIGHTKE
Ga0268251_1061044613300032159AgaveMSPAEWIRALGDRDPSVAIALAAIARAAGTSDLVEFGDLVM
Ga0310889_1012450623300032179SoilMTAPEWVSALGDRDPSVPIGLAAIVRAAGPTDSIAF
Ga0310896_1054014413300032211SoilMSPAEWIRALGDRDPSVPIALAAIARAAGLSDLVEFSDLVMGYREAHIAVYRALPGHRPLPGPGQSEITGDEVRS
Ga0310812_1033882113300032421SoilMTAAPEWVAALGDRDPSVPIALAAIVRAAGPSDSI

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.