Metagenome / Metatranscriptome Family F085421

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085421
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	53 residues
Representative Sequence	MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Number of Associated Samples	64
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	4.50 %
% of genes near scaffold ends (potentially truncated)	33.33 %
% of genes from short scaffolds (< 2000 bps)	95.50 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.459 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (29.730 % of family members)
Environment Ontology (ENVO)	Unclassified (54.955 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.865 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.68% β-sheet: 0.00% Coil/Unstructured: 54.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13508	Acetyltransf_7	2.70
PF03401	TctC	1.80
PF04986	Y2_Tnp	1.80
PF01315	Ald_Xan_dh_C	1.80
PF07885	Ion_trans_2	1.80
PF00239	Resolvase	0.90
PF03775	MinC_C	0.90
PF08734	GYD	0.90
PF04392	ABC_sub_bind	0.90
PF13384	HTH_23	0.90
PF13560	HTH_31	0.90
PF03592	Terminase_2	0.90
PF00583	Acetyltransf_1	0.90
PF12802	MarR_2	0.90
PF13185	GAF_2	0.90
PF00834	Ribul_P_3_epim	0.90
PF02738	MoCoBD_1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.80
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	0.90
COG0850	Septum site-determining protein MinC	Cell cycle control, cell division, chromosome partitioning [D]	0.90
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.90
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.90
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.90
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.90
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
All Organisms	root	All Organisms	40.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
cellular organisms	root	All Organisms → cellular organisms	40.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.62 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.60 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.80 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.80 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.80 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.80 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.80 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1088402	Not Available	544	Open in IMG/M
3300000956\|JGI10216J12902_113147894	Not Available	775	Open in IMG/M
3300002906\|JGI25614J43888_10185175	Not Available	563	Open in IMG/M
3300004268\|Ga0066398_10093876	Not Available	686	Open in IMG/M
3300005332\|Ga0066388_100106432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3286	Open in IMG/M
3300005332\|Ga0066388_100810665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1527	Open in IMG/M
3300005332\|Ga0066388_101310573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	1249	Open in IMG/M
3300005332\|Ga0066388_101568764	All Organisms → cellular organisms → Bacteria → Proteobacteria	1156	Open in IMG/M
3300005332\|Ga0066388_102634536	Not Available	916	Open in IMG/M
3300005332\|Ga0066388_103030673	Not Available	858	Open in IMG/M
3300005332\|Ga0066388_103284055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	826	Open in IMG/M
3300005332\|Ga0066388_104874267	Not Available	682	Open in IMG/M
3300005332\|Ga0066388_106949961	Not Available	569	Open in IMG/M
3300005332\|Ga0066388_106997976	Not Available	567	Open in IMG/M
3300005332\|Ga0066388_107073199	Not Available	564	Open in IMG/M
3300005332\|Ga0066388_107601486	Not Available	543	Open in IMG/M
3300005363\|Ga0008090_15782671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300005467\|Ga0070706_100238132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1699	Open in IMG/M
3300005467\|Ga0070706_101171714	Not Available	706	Open in IMG/M
3300005471\|Ga0070698_101279038	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005518\|Ga0070699_100712291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	917	Open in IMG/M
3300005713\|Ga0066905_100555858	Not Available	964	Open in IMG/M
3300005713\|Ga0066905_101702085	Not Available	579	Open in IMG/M
3300005764\|Ga0066903_100469588	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300005764\|Ga0066903_100776105	Not Available	1708	Open in IMG/M
3300005764\|Ga0066903_100865204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1629	Open in IMG/M
3300005764\|Ga0066903_101210169	Not Available	1403	Open in IMG/M
3300005764\|Ga0066903_101652156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1217	Open in IMG/M
3300005764\|Ga0066903_101980109	Not Available	1118	Open in IMG/M
3300005764\|Ga0066903_102437066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1012	Open in IMG/M
3300005764\|Ga0066903_102922870	Not Available	926	Open in IMG/M
3300005764\|Ga0066903_104960037	Not Available	706	Open in IMG/M
3300005764\|Ga0066903_105273731	Not Available	683	Open in IMG/M
3300005764\|Ga0066903_105346074	Not Available	678	Open in IMG/M
3300005764\|Ga0066903_105785608	Not Available	649	Open in IMG/M
3300005764\|Ga0066903_106395400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300005764\|Ga0066903_108023126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300005764\|Ga0066903_108205815	Not Available	534	Open in IMG/M
3300005764\|Ga0066903_108720597	Not Available	515	Open in IMG/M
3300005764\|Ga0066903_108884220	Not Available	510	Open in IMG/M
3300006797\|Ga0066659_10477325	Not Available	996	Open in IMG/M
3300009088\|Ga0099830_11551012	Not Available	552	Open in IMG/M
3300009792\|Ga0126374_10386989	Not Available	972	Open in IMG/M
3300010043\|Ga0126380_10498673	Not Available	934	Open in IMG/M
3300010043\|Ga0126380_11433401	Not Available	608	Open in IMG/M
3300010043\|Ga0126380_12268444	Not Available	503	Open in IMG/M
3300010046\|Ga0126384_10132812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1892	Open in IMG/M
3300010358\|Ga0126370_10883949	Not Available	805	Open in IMG/M
3300010358\|Ga0126370_10894074	Not Available	801	Open in IMG/M
3300010359\|Ga0126376_10790567	Not Available	925	Open in IMG/M
3300010359\|Ga0126376_10989991	Not Available	840	Open in IMG/M
3300010359\|Ga0126376_11797624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300010359\|Ga0126376_12075904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300010359\|Ga0126376_12654479	Not Available	550	Open in IMG/M
3300010360\|Ga0126372_10676109	Not Available	1004	Open in IMG/M
3300010360\|Ga0126372_11687305	Not Available	674	Open in IMG/M
3300010361\|Ga0126378_10266648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1810	Open in IMG/M
3300010361\|Ga0126378_12536008	Not Available	586	Open in IMG/M
3300010362\|Ga0126377_13254313	Not Available	525	Open in IMG/M
3300010362\|Ga0126377_13594764	Not Available	501	Open in IMG/M
3300010366\|Ga0126379_10220096	All Organisms → cellular organisms → Bacteria → Proteobacteria	1843	Open in IMG/M
3300010366\|Ga0126379_10435530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1368	Open in IMG/M
3300010366\|Ga0126379_12173620	Not Available	656	Open in IMG/M
3300010366\|Ga0126379_12812869	Not Available	582	Open in IMG/M
3300010398\|Ga0126383_12092522	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300010863\|Ga0124850_1080390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300012189\|Ga0137388_11890613	Not Available	527	Open in IMG/M
3300012210\|Ga0137378_11074716	Not Available	719	Open in IMG/M
3300012361\|Ga0137360_10375742	Not Available	1194	Open in IMG/M
3300012362\|Ga0137361_11609055	Not Available	570	Open in IMG/M
3300012923\|Ga0137359_11605596	Not Available	538	Open in IMG/M
3300012971\|Ga0126369_10346405	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300016294\|Ga0182041_11014530	Not Available	751	Open in IMG/M
3300016319\|Ga0182033_11395145	Not Available	631	Open in IMG/M
3300016404\|Ga0182037_10732341	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300016445\|Ga0182038_11137978	Not Available	694	Open in IMG/M
3300021560\|Ga0126371_10712482	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300021560\|Ga0126371_11215145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	890	Open in IMG/M
3300026319\|Ga0209647_1078024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1647	Open in IMG/M
3300031543\|Ga0318516_10144864	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300031543\|Ga0318516_10415409	Not Available	774	Open in IMG/M
3300031544\|Ga0318534_10458245	Not Available	730	Open in IMG/M
3300031544\|Ga0318534_10818290	Not Available	523	Open in IMG/M
3300031545\|Ga0318541_10796982	Not Available	527	Open in IMG/M
3300031561\|Ga0318528_10331148	Not Available	817	Open in IMG/M
3300031573\|Ga0310915_10003795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8216	Open in IMG/M
3300031573\|Ga0310915_10047868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2749	Open in IMG/M
3300031640\|Ga0318555_10255082	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300031668\|Ga0318542_10437694	Not Available	677	Open in IMG/M
3300031680\|Ga0318574_10751491	Not Available	571	Open in IMG/M
3300031681\|Ga0318572_10218541	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300031723\|Ga0318493_10811284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300031736\|Ga0318501_10089438	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300031744\|Ga0306918_10249427	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300031751\|Ga0318494_10543510	Not Available	678	Open in IMG/M
3300031763\|Ga0318537_10040997	All Organisms → cellular organisms → Bacteria → Proteobacteria	1666	Open in IMG/M
3300031771\|Ga0318546_10487615	Not Available	864	Open in IMG/M
3300031781\|Ga0318547_10994027	Not Available	524	Open in IMG/M
3300031792\|Ga0318529_10293171	Not Available	757	Open in IMG/M
3300031796\|Ga0318576_10097049	All Organisms → cellular organisms → Bacteria	1341	Open in IMG/M
3300031805\|Ga0318497_10665004	Not Available	584	Open in IMG/M
3300031805\|Ga0318497_10750450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300031819\|Ga0318568_10788097	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031832\|Ga0318499_10367510	Not Available	552	Open in IMG/M
3300031845\|Ga0318511_10053349	All Organisms → cellular organisms → Bacteria → Proteobacteria	1627	Open in IMG/M
3300031879\|Ga0306919_10504745	Not Available	932	Open in IMG/M
3300031890\|Ga0306925_11873200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300031947\|Ga0310909_10109003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2235	Open in IMG/M
3300031959\|Ga0318530_10349354	Not Available	612	Open in IMG/M
3300032043\|Ga0318556_10311130	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300032091\|Ga0318577_10151811	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Loam	Environmental → Terrestrial → Soil → Loam	33.33%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	29.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.90%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	29.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	23.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10884022	3300000655	Forest Soil	LEMAQTFRDRQARGALSYMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKS*
JGI10216J12902_1131478941	3300000956	Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
JGI25614J43888_101851751	3300002906	Grasslands Soil	MARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066398_100938762	3300004268	Tropical Forest Soil	MAHTFRDRQARGALSYMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKF*
Ga0066388_1001064323	3300005332	Tropical Forest Soil	MAQTFRDRDARGSLCYMAEVWLRLADNAKKVRPAMQQQQQIQPKDGSKKD*
Ga0066388_1008106653	3300005332	Tropical Forest Soil	MARTFGDRDARGMLSHMAQVWLRLADNCRDAKKARPAMQQQQQIQSKDDSKKD*
Ga0066388_1013105733	3300005332	Tropical Forest Soil	MAHTFGDRNARASLCYMAEVWLRLADNCQDAKKVRPAMQRQQQIQPKDNSRRD*
Ga0066388_1015687642	3300005332	Tropical Forest Soil	MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0066388_1026345363	3300005332	Tropical Forest Soil	MAQTFGDRDARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0066388_1030306731	3300005332	Tropical Forest Soil	MARTFGDRGARVVLSHMAQAWLRLADNCQDAKNVRPAMQQQQQIQPKDDSKKD*
Ga0066388_1032840553	3300005332	Tropical Forest Soil	MAAAFRDPEARSSLSYMAEVWLRLADNCQVRPAMQQQQQIQPKDDG
Ga0066388_1048742672	3300005332	Tropical Forest Soil	RRAQQCLEMAGTFRDREARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDDGRKD*
Ga0066388_1069499612	3300005332	Tropical Forest Soil	MARAFGDRDARVTLAHMAQAWLRLADNYQGARKVQLAVQQQHQIQAKDDDRE*
Ga0066388_1069979761	3300005332	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVPPAMQQQQQIQPKDDSKKD*
Ga0066388_1070731992	3300005332	Tropical Forest Soil	MAAAFRDPEARSSLSYMAEVWLRLADNCQVRPAMQQQQQIQPKDDGKKD*
Ga0066388_1076014861	3300005332	Tropical Forest Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQ
Ga0008090_157826711	3300005363	Tropical Rainforest Soil	MARAFGDRDARVTLAHMAQAWLRWAHNSQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0070706_1002381322	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MARTFGDNGARATLAHMAQAWLRVADNCQDAKGAAVQQQQQIQPNDDKE*
Ga0070706_1011717141	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAGTFREREARVSLSYMAEVWLRLADNSQDAKGAAVQQQRQIQPNDDQE*
Ga0070698_1012790382	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VLRDGAHVWRPRRAGHLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0070699_1007122911	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MVGTFRDGDARAALSHMAQVWLRLADKEVQPAVQQQQQIQPKKE*
Ga0066905_1005558582	3300005713	Tropical Forest Soil	MARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRAAIRQQQQIQPKDDSKKD*
Ga0066905_1017020851	3300005713	Tropical Forest Soil	MAHTFRDRQASGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066903_1004695882	3300005764	Tropical Forest Soil	MARAFGDRDARVTLAHMAQTWLRLADNFQDAKKVRPAVQQQQQMQPKDGERE*
Ga0066903_1007761053	3300005764	Tropical Forest Soil	MAAAFRDREARISPSYMAQVWLRLADNCQGVKEIRPAMQQQPQIQPSDNGKKD*
Ga0066903_1008652043	3300005764	Tropical Forest Soil	MARTFGDRDARGSLCYMAEVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066903_1012101692	3300005764	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCPDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0066903_1016521563	3300005764	Tropical Forest Soil	MAQTFGDRNGRGSLCYMAEVWLRLADNYQDAKKVRPVMQQQQQIQPKDDGKKD*
Ga0066903_1019801092	3300005764	Tropical Forest Soil	MAQTFADRDARGSLCYMAEVWPKLADRYQDADEVRPAMQQQQQIQPKDDGKKD*
Ga0066903_1024370661	3300005764	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDD
Ga0066903_1029228701	3300005764	Tropical Forest Soil	MARTFGDRDARVVLSHMAQAWLRLADNCKDAKKVRPAMQQQQQIQPKDDDRQ*
Ga0066903_1049600371	3300005764	Tropical Forest Soil	MARTFGDHGVRVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQRIQPKDDSKKD*
Ga0066903_1052737311	3300005764	Tropical Forest Soil	MARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKK
Ga0066903_1053460742	3300005764	Tropical Forest Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPNDDGKKD*
Ga0066903_1057856081	3300005764	Tropical Forest Soil	MAQAFGDRNGRGSLCYMADVWLKLADRYQDAKTVRPTMQQQQQIQPKDDSKKD*
Ga0066903_1063954001	3300005764	Tropical Forest Soil	MAQTFGDRDVRGSLCYMAEVWLKLADRYQDADEVRPAMQRQQQIQPKDDSKKD*
Ga0066903_1080231261	3300005764	Tropical Forest Soil	MARTFGDRDSRVTLAHMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDNSRKD*
Ga0066903_1082058151	3300005764	Tropical Forest Soil	MARTFGDRNARVILSHMAQAWLRLADNCQDARKVRPAMRQQQQIQPKDDDKKK*
Ga0066903_1087205971	3300005764	Tropical Forest Soil	MAHTFGDRDARGSLCYMAEVWLRVADNCQDAKKVRPAMQQQQQIQPKDDNKKD*
Ga0066903_1088842201	3300005764	Tropical Forest Soil	MARAFGNRDARVTLAHMAQAWLRLADKCQDAKKVRPAMQQQQQIQPK
Ga0066659_104773251	3300006797	Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDSAKKD*
Ga0099830_115510121	3300009088	Vadose Zone Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126374_103869892	3300009792	Tropical Forest Soil	MARTFGDRDARVILSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKD*
Ga0126380_104986731	3300010043	Tropical Forest Soil	RRRAQQCLEMARTFGDQRAQVTLAHMAQAWLRVANNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126380_114334011	3300010043	Tropical Forest Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126380_122684441	3300010043	Tropical Forest Soil	MARTFGDHGGRVTLADMAQAWLRVADNCKDAKKVRPAMQQQEQIQPKDDSKKN*
Ga0126384_101328122	3300010046	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0126370_108839492	3300010358	Tropical Forest Soil	LSNALKFGHNGARVTLAHMAQAWLRLADNCQDAKKVRPAMQPQRQIQPKDDSKKD*
Ga0126370_108940741	3300010358	Tropical Forest Soil	MARTFGDQGARVTLAHMAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126376_107905671	3300010359	Tropical Forest Soil	MARTFGDHGARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDDGNKD*
Ga0126376_109899911	3300010359	Tropical Forest Soil	MARAFGDRDARITLAHMAQAWLRLADNYQGARKVQPAVQQQQQIQPKDDDGG*
Ga0126376_117976241	3300010359	Tropical Forest Soil	RAHQCLEMARTFGDRGARGSLCYMAEVWLRLADNCQDARKSRPAMQQQQQIQPKDDGKKD
Ga0126376_120759041	3300010359	Tropical Forest Soil	DRDARVILSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKD*
Ga0126376_126544792	3300010359	Tropical Forest Soil	MAQTFGDRDARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPK
Ga0126372_106761091	3300010360	Tropical Forest Soil	MARTFGDHGARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0126372_116873051	3300010360	Tropical Forest Soil	MAQTFADRDARGSLCYMAEVWPKLADRYQDADEVRPAMQQQQQIQPKDDSKKD*
Ga0126378_102666484	3300010361	Tropical Forest Soil	MAHTFGDRDARGSLCYMVEVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126378_125360081	3300010361	Tropical Forest Soil	MARAFGDRDARITLAHMAQAWLRLADNYQGARKVQPAVQQQQQIQPKDDD
Ga0126377_132543132	3300010362	Tropical Forest Soil	FGDHGGRVTLADMAQAWLRVADNCKDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126377_135947641	3300010362	Tropical Forest Soil	RTFGDRDARGMLSHMAQVWLRLADNCRDAKKARPAMQQQQQIQPKDDGKKD*
Ga0126379_102200963	3300010366	Tropical Forest Soil	MARAFGDRDPRVTLAHMAQAWLRWAHNCQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0126379_104355302	3300010366	Tropical Forest Soil	MARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126379_121736201	3300010366	Tropical Forest Soil	MARTFGDQGARVTLAHMAQVWLRVADNYRDAKKVRPAMQQQQQIQPKDNSRKD*
Ga0126379_128128692	3300010366	Tropical Forest Soil	MARAFGDPDARVTLAHMAQAWLRLADKCQDAKKVRPAMQQQQQIQAKDGDRE*
Ga0126383_120925221	3300010398	Tropical Forest Soil	TFGDHGARVTLAHMAQAWLRVADNCQDAKKVRLAMQQQQQIQPKDDSKKD*
Ga0124850_10803901	3300010863	Tropical Forest Soil	LSNALKFGHNGARVTQAWLRLADNCQDAKKVRPAMQPQRQIQPKDDSKKD*
Ga0137388_118906131	3300012189	Vadose Zone Soil	RAQQCLEMARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0137378_110747161	3300012210	Vadose Zone Soil	MARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0137360_103757422	3300012361	Vadose Zone Soil	MARAFGDRDARITLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0137361_116090551	3300012362	Vadose Zone Soil	NGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0137359_116055961	3300012923	Vadose Zone Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKD
Ga0126369_103464052	3300012971	Tropical Forest Soil	MARAFGDRDARVTLAHMAQAWLRWAHNCQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0182041_110145301	3300016294	Soil	MARAFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQMQPKDGDGE
Ga0182033_113951451	3300016319	Soil	MAHTFKDRDARGSLCYMAEVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0182037_107323412	3300016404	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKD
Ga0182038_111379781	3300016445	Soil	FFHCRSQRVGPTRTFRDRQARCALSYMAQLWLRLADNCQAAKKVRPAMQQQQQIQPKDDGKKD
Ga0126371_107124823	3300021560	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0126371_112151451	3300021560	Tropical Forest Soil	MARTFGDQGARVTLAHMAQAWLRVADNYQDAKKVRPAMQQQQQIQPKDDGKE
Ga0209647_10780243	3300026319	Grasslands Soil	MARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318516_101448641	3300031543	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0318516_104154092	3300031543	Soil	GFKMFSDGHLEMARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318534_104582452	3300031544	Soil	MARRFGDRDARVTLAHMAQDWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKG
Ga0318534_108182901	3300031544	Soil	MARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKN
Ga0318541_107969821	3300031545	Soil	MARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318528_103311481	3300031561	Soil	MARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0310915_100037955	3300031573	Soil	MAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0310915_100478683	3300031573	Soil	MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0318555_102550821	3300031640	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQRIQPKDDGKKD
Ga0318542_104376941	3300031668	Soil	MARTFGDQGARVTLAHMAQVWLRVADNYRDAKKVRPAIQQQQQI
Ga0318574_107514911	3300031680	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKK
Ga0318572_102185412	3300031681	Soil	MARTFGDHGARMTLAHMAQAWLRVADDCQDAKKVRPVMQQQQQIQPKDDSKKD
Ga0318493_108112841	3300031723	Soil	AQQCLEMAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0318501_100894381	3300031736	Soil	MAHTFRDRQARGALSYMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0306918_102494272	3300031744	Soil	MVRTFGDHGARMTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318494_105435102	3300031751	Soil	MARTFGDRDARVILSHMAQAWLRLADNCQRAQEVRPAMQQQQQIQPKDDSKND
Ga0318537_100409972	3300031763	Soil	MARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKD
Ga0318546_104876151	3300031771	Soil	QCLEMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318547_109940271	3300031781	Soil	CLEMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318529_102931711	3300031792	Soil	MFSDGHLEMARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKK
Ga0318576_100970492	3300031796	Soil	AQQCLEMARTFGDHGARMTLARMAQAWLRVADNCQDAKKVRPVMQQQQQIQPKDDSKKD
Ga0318497_106650041	3300031805	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQ
Ga0318497_107504501	3300031805	Soil	YRRRAQQCLEMAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0318568_107880972	3300031819	Soil	LEMVRTFGDHGARMTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318499_103675101	3300031832	Soil	MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQ
Ga0318511_100533492	3300031845	Soil	MARTFGDRDVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0306919_105047451	3300031879	Soil	MARAFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQMRPRTATESKP
Ga0306925_118732001	3300031890	Soil	MARRFGDRDARVTLSHMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0310909_101090036	3300031947	Soil	MAQTFRDRDARGSLCYMAEVWLRLADNYQHAKKGRPTMQQQQQIQPKDDSKKD
Ga0318530_103493541	3300031959	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPK
Ga0318556_103111302	3300032043	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQRIQ
Ga0318577_101518112	3300032091	Soil	ADEYRRRAQQCLEMARTFGDHGARMTLAHMAQAWLRVADDCQDAKKVRPVMQQQQQIQPKDDSKKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085421

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences