NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F085457

Metagenome Family F085457

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085457
Family Type Metagenome
Number of Sequences 111
Average Sequence Length 44 residues
Representative Sequence MRKVILLIAATALILCSVDVWAGGSRTTTTDDAAVFVISNAL
Number of Associated Samples 59
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 63.96 %
% of genes near scaffold ends (potentially truncated) 27.93 %
% of genes from short scaffolds (< 2000 bps) 81.08 %
Associated GOLD sequencing projects 52
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (55.856 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(63.964 % of family members)
Environment Ontology (ENVO) Unclassified
(63.964 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(66.667 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 57.14%    β-sheet: 0.00%    Coil/Unstructured: 42.86%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF13202EF-hand_5 20.72
PF13924Lipocalin_5 4.50
PF14659Phage_int_SAM_3 0.90
PF13405EF-hand_6 0.90
PF02810SEC-C 0.90
PF00589Phage_integrase 0.90
PF00072Response_reg 0.90
PF04392ABC_sub_bind 0.90
PF02371Transposase_20 0.90
PF13384HTH_23 0.90
PF03734YkuD 0.90
PF01740STAS 0.90
PF00916Sulfate_transp 0.90
PF01799Fer2_2 0.90
PF14279HNH_5 0.90
PF09361Phasin_2 0.90
PF03781FGE-sulfatase 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG0659Sulfate permease or related transporter, MFS superfamilyInorganic ion transport and metabolism [P] 0.90
COG1262Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domainPosttranslational modification, protein turnover, chaperones [O] 0.90
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.90
COG2233Xanthine/uracil permeaseNucleotide transport and metabolism [F] 0.90
COG2252Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) familyNucleotide transport and metabolism [F] 0.90
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.90
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.90
COG3547TransposaseMobilome: prophages, transposons [X] 0.90

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms55.86 %
UnclassifiedrootN/A44.14 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002914|JGI25617J43924_10324845Not Available532Open in IMG/M
3300005172|Ga0066683_10336913All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3937Open in IMG/M
3300005172|Ga0066683_10748810All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium574Open in IMG/M
3300005179|Ga0066684_10039121All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2648Open in IMG/M
3300005179|Ga0066684_10491561All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium824Open in IMG/M
3300005187|Ga0066675_10461162Not Available946Open in IMG/M
3300005454|Ga0066687_10327736Not Available873Open in IMG/M
3300005536|Ga0070697_102056028All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium511Open in IMG/M
3300005540|Ga0066697_10609451Not Available605Open in IMG/M
3300005559|Ga0066700_10438521Not Available918Open in IMG/M
3300005560|Ga0066670_10623124Not Available656Open in IMG/M
3300005561|Ga0066699_10858552Not Available636Open in IMG/M
3300005598|Ga0066706_10470676Not Available1001Open in IMG/M
3300006028|Ga0070717_10665874Not Available945Open in IMG/M
3300006034|Ga0066656_10468401All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium821Open in IMG/M
3300006046|Ga0066652_100724375All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium948Open in IMG/M
3300006794|Ga0066658_10890940Not Available511Open in IMG/M
3300006796|Ga0066665_10185512All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1604Open in IMG/M
3300006796|Ga0066665_10399946Not Available1133Open in IMG/M
3300006800|Ga0066660_10593592All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium926Open in IMG/M
3300006800|Ga0066660_10670980Not Available857Open in IMG/M
3300009012|Ga0066710_101961332All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1872Open in IMG/M
3300009012|Ga0066710_102182523All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium809Open in IMG/M
3300009012|Ga0066710_103380009Not Available607Open in IMG/M
3300009012|Ga0066710_104207278Not Available538Open in IMG/M
3300009038|Ga0099829_10042687All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium3313Open in IMG/M
3300009038|Ga0099829_10289397All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1342Open in IMG/M
3300009038|Ga0099829_10498846Not Available1010Open in IMG/M
3300009038|Ga0099829_10505942Not Available1003Open in IMG/M
3300009038|Ga0099829_11667925All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium525Open in IMG/M
3300009088|Ga0099830_10115277All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2027Open in IMG/M
3300009088|Ga0099830_10439905All Organisms → cellular organisms → Bacteria1058Open in IMG/M
3300009088|Ga0099830_10857124Not Available750Open in IMG/M
3300009089|Ga0099828_10036002All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium4026Open in IMG/M
3300009089|Ga0099828_10804898Not Available842Open in IMG/M
3300009089|Ga0099828_10888537All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium796Open in IMG/M
3300009089|Ga0099828_10922448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium780Open in IMG/M
3300009090|Ga0099827_10098642All Organisms → cellular organisms → Bacteria2319Open in IMG/M
3300009090|Ga0099827_10115139All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2157Open in IMG/M
3300009090|Ga0099827_10207255Not Available1633Open in IMG/M
3300009137|Ga0066709_100661169All Organisms → cellular organisms → Bacteria1497Open in IMG/M
3300009137|Ga0066709_100751849Not Available1407Open in IMG/M
3300009137|Ga0066709_100867915All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1313Open in IMG/M
3300009137|Ga0066709_101708664Not Available892Open in IMG/M
3300009143|Ga0099792_10876374All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium593Open in IMG/M
3300010303|Ga0134082_10567940Not Available501Open in IMG/M
3300010361|Ga0126378_12408692Not Available601Open in IMG/M
3300010366|Ga0126379_10447421All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1352Open in IMG/M
3300011271|Ga0137393_10825024Not Available792Open in IMG/M
3300012096|Ga0137389_10392591All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1184Open in IMG/M
3300012096|Ga0137389_11497030Not Available571Open in IMG/M
3300012189|Ga0137388_10136894All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense2152Open in IMG/M
3300012189|Ga0137388_10859658Not Available839Open in IMG/M
3300012198|Ga0137364_10013946All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4719Open in IMG/M
3300012198|Ga0137364_10120881All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1866Open in IMG/M
3300012198|Ga0137364_10178794All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1547Open in IMG/M
3300012198|Ga0137364_10393482All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1037Open in IMG/M
3300012199|Ga0137383_10132851All Organisms → cellular organisms → Bacteria → Proteobacteria1818Open in IMG/M
3300012199|Ga0137383_10288968All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1201Open in IMG/M
3300012199|Ga0137383_10569908Not Available828Open in IMG/M
3300012199|Ga0137383_10683543Not Available750Open in IMG/M
3300012200|Ga0137382_10217107All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.31318Open in IMG/M
3300012200|Ga0137382_11094715Not Available569Open in IMG/M
3300012201|Ga0137365_10908300All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300012206|Ga0137380_10745730All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria848Open in IMG/M
3300012206|Ga0137380_11554690Not Available546Open in IMG/M
3300012207|Ga0137381_10728110All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria861Open in IMG/M
3300012207|Ga0137381_10898459All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium766Open in IMG/M
3300012207|Ga0137381_11275744Not Available627Open in IMG/M
3300012208|Ga0137376_10101013All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2443Open in IMG/M
3300012209|Ga0137379_10060355All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3652Open in IMG/M
3300012209|Ga0137379_10204650All Organisms → cellular organisms → Bacteria1887Open in IMG/M
3300012209|Ga0137379_10493252All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1133Open in IMG/M
3300012209|Ga0137379_10771615Not Available866Open in IMG/M
3300012210|Ga0137378_10068673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3214Open in IMG/M
3300012210|Ga0137378_10757782Not Available883Open in IMG/M
3300012210|Ga0137378_11332393Not Available633Open in IMG/M
3300012210|Ga0137378_11425154Not Available605Open in IMG/M
3300012285|Ga0137370_10215396Not Available1130Open in IMG/M
3300012350|Ga0137372_10975644Not Available593Open in IMG/M
3300012351|Ga0137386_10020653All Organisms → cellular organisms → Bacteria4453Open in IMG/M
3300012351|Ga0137386_10891195Not Available638Open in IMG/M
3300012354|Ga0137366_10134762All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1862Open in IMG/M
3300012356|Ga0137371_10317049Not Available1213Open in IMG/M
3300012357|Ga0137384_10115479All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2242Open in IMG/M
3300012357|Ga0137384_10256713All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1457Open in IMG/M
3300012357|Ga0137384_10680470Not Available836Open in IMG/M
3300012359|Ga0137385_10147064All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.32073Open in IMG/M
3300012359|Ga0137385_10569476Not Available954Open in IMG/M
3300012359|Ga0137385_11263350All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria601Open in IMG/M
3300012363|Ga0137390_10103284All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → Acidocella facilis2818Open in IMG/M
3300012469|Ga0150984_121401337All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium570Open in IMG/M
3300018433|Ga0066667_11870937Not Available546Open in IMG/M
3300018468|Ga0066662_10326653All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1305Open in IMG/M
3300018468|Ga0066662_12393160Not Available556Open in IMG/M
3300018482|Ga0066669_12061698Not Available536Open in IMG/M
3300026547|Ga0209156_10494891Not Available505Open in IMG/M
3300026548|Ga0209161_10305810Not Available762Open in IMG/M
3300027846|Ga0209180_10015250All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4019Open in IMG/M
3300027846|Ga0209180_10015894All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae3941Open in IMG/M
3300027846|Ga0209180_10016383All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3884Open in IMG/M
3300027846|Ga0209180_10023285All Organisms → cellular organisms → Bacteria → Proteobacteria3292Open in IMG/M
3300027846|Ga0209180_10032383All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2822Open in IMG/M
3300027846|Ga0209180_10351748Not Available840Open in IMG/M
3300027862|Ga0209701_10037416All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3141Open in IMG/M
3300027862|Ga0209701_10309731All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium904Open in IMG/M
3300027875|Ga0209283_10975998All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium507Open in IMG/M
3300027882|Ga0209590_10116147All Organisms → cellular organisms → Bacteria1620Open in IMG/M
3300027882|Ga0209590_10339855All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium967Open in IMG/M
3300027903|Ga0209488_10676285Not Available742Open in IMG/M
3300032261|Ga0306920_100821500Not Available1363Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil63.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil18.02%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil11.71%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.90%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25617J43924_1032484513300002914Grasslands SoilMRKTVLLIAAIALILGSVEVWAGGSRNGTSDDAAVFVISNAL*
Ga0066683_1033691323300005172SoilMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISNAL*
Ga0066683_1074881023300005172SoilMRKIVLLIAATALILCSIEVWAGGSRIATTDDAAVFVLSNAL*
Ga0066684_1003912123300005179SoilMLRMIALIVATALFVFSVDVWAGGSGTADTDNAPVFVLSNAL*
Ga0066684_1049156113300005179SoilGFMRKIVLLIAATTLILGSVEVWAAGSRSTASDDAPVFIISNAL*
Ga0066675_1046116223300005187SoilMRGIVLLIAATALFLCSVEVWAGGSWTTVADDAPVFVISNAL*
Ga0066687_1032773633300005454SoilMRKIALLIVAAALFLGIVRGWAGGSWTDASDDAPVFVLSNAL*
Ga0070697_10205602823300005536Corn, Switchgrass And Miscanthus RhizosphereMRNMIILIVATGLLLCSVDVWAGGSWTTATDDAPVFVISNAV*
Ga0066697_1060945113300005540SoilMRLEGIMRNLVLLIAATALFLCSVDVWAGSWTDAAEHPPTFIVSNAI*
Ga0066700_1043852133300005559SoilMSPEPSRLSYYSDMEGIMRKVILLIAATALILCSVDVWAGGSRTTTTDDAAVFVISNAL*
Ga0066670_1062312413300005560SoilMRGIVLLIAATALFLCSVEVWAGGSWTVASDDAPVFVISNAL*
Ga0066699_1085855223300005561SoilMEGFMRKIVLLIAATTLILGSVEVWPGGSRTTATDDAPVFIISNAL*
Ga0066706_1047067623300005598SoilMRKIVLLIAAAALILCSVEVWAGGSWTAATDEAAVFVISNAL*
Ga0070717_1066587423300006028Corn, Switchgrass And Miscanthus RhizosphereVSDVEGTMRKILLLIVATALILCSVDVWAGGTWTTTSDEAAVFVISNAL*
Ga0066656_1046840113300006034SoilPQRMWRGPMPKFVLLIAATALFLCSVEVWAGGSWTSAADDAPVFVVSNAL*
Ga0066652_10072437523300006046SoilMRNIIILIVATGLLLCSVDVWAGGSRTDTTDNAAVFVICNAL*
Ga0066658_1089094023300006794SoilRGFVLLIAATLFLCSVEVWAGGPWTTAPDDAPVFVISNAL*
Ga0066665_1018551213300006796SoilMRKIVLLIVATALILCSVEVWAGGSRIATTDDAPVFVLSNAL*
Ga0066665_1039994623300006796SoilMEGIMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISNAL*
Ga0066660_1059359213300006800SoilMPKFVLLIAATALFLCSVEVWAGGSWTSAADDAPVFVVSNAL*
Ga0066660_1067098033300006800SoilISAAALFLWSVDVWASASWSDTIDDAAVFILSNAL*
Ga0066710_10196133223300009012Grasslands SoilMRKIVLLIVATALILCSVDVWAGGSWTTASDDDAAVFVISNAL
Ga0066710_10218252323300009012Grasslands SoilIAATALFLCSVEVWAGGSWTSAADDAPVFVVSNAL
Ga0066710_10338000913300009012Grasslands SoilMSPEPSRLSYYSDIEGIMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISNAL
Ga0066710_10420727823300009012Grasslands SoilMEGFMRKIVLLIAATTLILGSVEVWAGGSRTTATDDAPVFIISNAL
Ga0099829_1004268763300009038Vadose Zone SoilVEGIMRKVILLIAATALILCSVDVWAGGSRTDTTDNAAVFIISNAL*
Ga0099829_1028939743300009038Vadose Zone SoilVASDVEDTMRKIVLLIAATALILCSIEVWAGGSRIATTDDAAVFVLSNAL*
Ga0099829_1049884613300009038Vadose Zone SoilMDLEGTMRKIALLIAATALCLGIVEVWTGGSRTDTNENAAVFVISNAL*
Ga0099829_1050594213300009038Vadose Zone SoilMRKIVLLIAAAALILCSVDVWAGGSWTTTTDDAAVFIISNAL*
Ga0099829_1166792513300009038Vadose Zone SoilLMVSDEEGTMRKIVLLIAATALFLCSVDVWAGGSRTGTTDDAAVFVICNAL*
Ga0099830_1011527733300009088Vadose Zone SoilMRKIILLIAATALILCSIEVWAGGSRIATTDDAAVFVLSNAL*
Ga0099830_1043990523300009088Vadose Zone SoilMVSDEEGTMRKIVLLIAATALFLCSVDVWAGGSRTGTTDDAAVFVICNAL*
Ga0099830_1085712413300009088Vadose Zone SoilMRKVILLIAATALIVCSVEVWAGGSRTATTDDAPVF
Ga0099828_1003600213300009089Vadose Zone SoilRAPMRNIIILIVATGLLLCSVDVWAGGSWTDTADNAAVFVICNAL*
Ga0099828_1080489813300009089Vadose Zone SoilDVEGTMRKIVLLIAAAALILCSVDVWAGGSWTTTTDDAAVFIISNAL*
Ga0099828_1088853733300009089Vadose Zone SoilILIVATGLLLCSVDVWAGGSRTDTTDNAAVFVICNAL*
Ga0099828_1092244823300009089Vadose Zone SoilMRKIILLIAATALILCSVEVWAGGSRIATTDDAAVFVISNAL*
Ga0099827_1009864243300009090Vadose Zone SoilMVSDEEALMRKMLLLIAAAALILCSVDVWAGGSRTDTTDDAAVFVISNAL*
Ga0099827_1011513943300009090Vadose Zone SoilMRKIILLIAATALILCSVEVWAGGSRIATTDDAAVFVLSNAL*
Ga0099827_1020725523300009090Vadose Zone SoilMRKIILLIAATALILCNVDVWAGGSRTDTTDNAAVFIISNAL*
Ga0066709_10066116913300009137Grasslands SoilVASDVEDTMRKIVLLIAATALILCSIEVWAGGSRIATTDDAPVFVLSNAL*
Ga0066709_10075184923300009137Grasslands SoilMEGIMRKVILLIAATALILCSVDVWAGGSRTTTTDDAAVFVISNAL*
Ga0066709_10086791543300009137Grasslands SoilVASDVEDTMPKIILLIAATALILCSVEVWAGGSRIAATDDAAVFVLSNAL*
Ga0066709_10170866413300009137Grasslands SoilMRKIVLLIVATALILCSVDVWAGGSWTTASDDDAAVFVISNAL*
Ga0099792_1087637423300009143Vadose Zone SoilMRKIILLIAATALILCSVEVWAGGSRIATTDDAPVFVLSNAL*
Ga0134082_1056794013300010303Grasslands SoilKVVLVIAAAALFLCSVNVWAGGSRIDATDHAPTFIISNAL*
Ga0126378_1240869223300010361Tropical Forest SoilMRKLILLIAATALFLCSISVWAGGSRTETTDDAAVFVISN
Ga0126379_1044742123300010366Tropical Forest SoilMRKLILLIAATALFLCSISVWAGGSRTETTDDAAVFVISNAL*
Ga0137393_1082502433300011271Vadose Zone SoilMEGIMRKVILLIAATALILCSVDVWAGGSRTDTTDN
Ga0137389_1039259113300012096Vadose Zone SoilMRKLVLAIIATALFLCSLDVWAGGSRATATDDAPVFVISNAL*
Ga0137389_1149703013300012096Vadose Zone SoilMRKIILLIAATALILCNVDVWAGGSRTDTTDNAAVFIISNAL
Ga0137388_1013689423300012189Vadose Zone SoilMEGIMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISNAR*
Ga0137388_1085965823300012189Vadose Zone SoilMRKVILLIAATALILCSVDVWAGGSRTDTTDNAAVFIISNAL*
Ga0137364_1001394653300012198Vadose Zone SoilMPKIILLIAATALILCSVEVWAGGSRIAATDDAAVFVLSNAL*
Ga0137364_1012088143300012198Vadose Zone SoilMEAAMRKIVLLIAATALILCSVDVWAGGSWTADTDDAAVFVICNAL*
Ga0137364_1017879433300012198Vadose Zone SoilMRKILLLIVATALILCSVDVWAGGPWTGTTDEAAVFVISNAL*
Ga0137364_1039348213300012198Vadose Zone SoilMRNIIILIVATGLLLCSVDVWAGGSRTDTADNAAVFVICNAL*
Ga0137383_1013285133300012199Vadose Zone SoilMEGAMRKIILLIAATALFLCSVEVWAGGSWTAATDEAAVFVISNAL*
Ga0137383_1028896813300012199Vadose Zone SoilMRKIVLLITSTALFLCSVEVWAGGAWSTATPDSAVFVI
Ga0137383_1056990813300012199Vadose Zone SoilMRKIVLLIAATALIVCSVEVWAGGSRSTTADDAAVFIISNAL*
Ga0137383_1068354313300012199Vadose Zone SoilMRNIVLLIAAAALILSSVEVWAGGSWTAATDEAAVFVISNAL*
Ga0137382_1021710713300012200Vadose Zone SoilMEGIMRKVILLIAAAALILCSGEVWAGGSWTADTDEAAVFVISKAL*
Ga0137382_1109471513300012200Vadose Zone SoilMRKIVLLIAATTLFLCSVEVWAGGSWTADTDDAAVFVISN
Ga0137365_1090830013300012201Vadose Zone SoilMRNIVLLIAATALILCSVEVWAGGSRTTTTDDAAVFIISNAL*
Ga0137380_1074573013300012206Vadose Zone SoilMRKIVLLIAATALIVCSVEVWAGGSRTTTADDAAVFIISNAL*
Ga0137380_1155469013300012206Vadose Zone SoilMRKIVLLIAATALILCSVDVWAGGSWTADTDDAAVFVICNAL*
Ga0137381_1072811023300012207Vadose Zone SoilMEGIMRKVILLIAATALILCSVDVWAGGSRITTTDDAAVFVISNAL*
Ga0137381_1089845933300012207Vadose Zone SoilGTMRNIVILIAATALLLCSVDVWAGGSWTGTTDDAAVFVICNAL*
Ga0137381_1127574413300012207Vadose Zone SoilRLSYYSDMEGIMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISNAL*
Ga0137376_1010101353300012208Vadose Zone SoilVASDVEDTMPKIILLIAATALILCSVEVWAGGSRIATTDDAAVFVLSNAL*
Ga0137379_1006035533300012209Vadose Zone SoilMRKIVLLITATALFLCSVEVWAGGAWSTATPDSAVFVICNAL*
Ga0137379_1020465033300012209Vadose Zone SoilMRNIVLLIAATALILCSVEVSAGGSRTTTTDDAAVFIISNAL*
Ga0137379_1049325243300012209Vadose Zone SoilKIILLIAATALILCSVEVWAGGSRIATTDDAAVFVLSNAL*
Ga0137379_1077161523300012209Vadose Zone SoilMRNIVLLIAATALILCSVEVWAGGSRTTTADDAAVFIISNAL*
Ga0137378_1006867333300012210Vadose Zone SoilILLIAATALILCSVDVWAGGSRITTTDDAAVFVISNAL*
Ga0137378_1075778213300012210Vadose Zone SoilMRKIVLLIAATTLFLCSVEVWAGGSWTADTDDAAVFVISNAL*
Ga0137378_1133239313300012210Vadose Zone SoilMDLEGTMRKIALLIAATALCLGIVEVWTGGSRTDTNENAAVFVISN
Ga0137378_1142515413300012210Vadose Zone SoilMRNIVLLIAAAALILSSVEVWAGGSWTAATDEAAV
Ga0137370_1021539623300012285Vadose Zone SoilMRKVILLIAATALILCSVDVWAGGSRTTTTDDAAVFVISNAL*
Ga0137372_1097564413300012350Vadose Zone SoilMEGIMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISDAL*
Ga0137386_1002065313300012351Vadose Zone SoilMRKIVLLIAAAALILCSVEVWAGGSWTAATDEVAVFVISNAL*
Ga0137386_1089119513300012351Vadose Zone SoilNIVLLIAATALILCSVEVWAGGSRTTTTDDAAVFIISNAL*
Ga0137366_1013476243300012354Vadose Zone SoilMRKIVLLITSTALFLCSVEVWAGGAWSTATPDSAVFVICNAL*
Ga0137371_1031704923300012356Vadose Zone SoilMEGIMRKVILLIAATALILCSVDVWAGGSRTTTTDDAAVFVISNAF*
Ga0137384_1011547933300012357Vadose Zone SoilMRKIVLLIAAAALILCSVEVWAGGSWTAATDEAAVFVISKAL*
Ga0137384_1025671323300012357Vadose Zone SoilLLIAATALILCSVDVWAGGSRITTTDDAAVFVISNAL*
Ga0137384_1068047013300012357Vadose Zone SoilYYSDIEGIMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISNAL*
Ga0137385_1014706453300012359Vadose Zone SoilMEGIMRKVILLIAATALILCSVDVWAGGSRITTTDDAAVFVISHAL*
Ga0137385_1056947623300012359Vadose Zone SoilMEAAMRKIVLLIAATALLLCSVDVWAGGSWTADTDDAAVFVICNAL*
Ga0137385_1126335013300012359Vadose Zone SoilMSPEPSRLSYYSDMEGIMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISNAL*
Ga0137390_1010328413300012363Vadose Zone SoilMRNIIILIVATGLLLCSVDVWAGGSWTDTADNAAVFVICDAL
Ga0150984_12140133713300012469Avena Fatua RhizosphereRKIALLIAATALILGSVEVWAGGSWAPATADAGVFVICNAL*
Ga0066667_1187093713300018433Grasslands SoilMSPEPSRLSYYSDIEGIMRKVILLIAATALLLCSVEVWAGGSRTDTTDDAAVFIISNAL
Ga0066662_1032665333300018468Grasslands SoilMRGIVLLIAATALFLCSVEVWAGGSWTTVADDAPVFVISNAL
Ga0066662_1239316013300018468Grasslands SoilMSPEPSRLSYYSDMEGIMRKVILLIAATALILCSVDVWAGGPWTGTTDEAAVFVISNAL
Ga0066669_1206169813300018482Grasslands SoilMRLEGIMRNLVLLIAATALFLCSVDVWAGSWTDAAEHPPTFIVSNAI
Ga0209156_1049489123300026547SoilMRGIVLLIAATALFLCSVEVWAGGSWTVASDDAPVFVISNAL
Ga0209161_1030581023300026548SoilMRKIVLLIAAAALILCSVEVWAGGSWTAATDEAAVFVISNAL
Ga0209180_1001525083300027846Vadose Zone SoilMSPEPSRLSYYSDMEGIMRKVILLIAATALILCSVEVWAGGSRTDTTDDAAVFIISNAL
Ga0209180_1001589423300027846Vadose Zone SoilMRKIVLLIAATALILCSIEVWAGGSRIATTDDAAVFVLSNAL
Ga0209180_1001638343300027846Vadose Zone SoilMRNIIILIVATGLLLCSVDVWAGGSRTDTTDNAAVFVICNAL
Ga0209180_1002328513300027846Vadose Zone SoilMRNIIILIVATGLLLCSVDVWAGGSWTDTADNAAVFVICNAL
Ga0209180_1003238313300027846Vadose Zone SoilMRKVILLIAATALILCSVDVWAGGSRTDTTDNAAVFIISNAL
Ga0209180_1035174813300027846Vadose Zone SoilMRKIVLLIAAAALILCSVDVWAGGSWTTTTDDAAVFIISNAL
Ga0209701_1003741643300027862Vadose Zone SoilMRKIILLIAATALILCSVEVWAGGSRIATTDDAAVFVLSNAL
Ga0209701_1030973123300027862Vadose Zone SoilMRKIVLLIAATALFLCSVDVWAGGSRTGTTDDAAVFVICNAL
Ga0209283_1097599813300027875Vadose Zone SoilVLLIAATALFLCSVDVWAGGSRTGTTDDAAVFVICNAL
Ga0209590_1011614743300027882Vadose Zone SoilMRKILLLIVATALILCSVDVWAGGPWTGTTDEAAVFVISNAL
Ga0209590_1033985513300027882Vadose Zone SoilMRKIILLIAATALILCSVEVWAGGSRIATTDDAPVFVLSNAL
Ga0209488_1067628513300027903Vadose Zone SoilMRKIVLLIAAAALILCSVDVWAGGSWTTTTDDAAVF
Ga0306920_10082150023300032261SoilMRKRILLIAATALFLCSISVWAGGSQTETTDDAAVFVISNAL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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