Metagenome Family F085519

Basic Information
Family ID	F085519
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	46 residues
Representative Sequence	MINRRFMIVPPALPSGGHAEPLEQTSKDFLCLLLEMANMRV
Number of Associated Samples	100
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	69.37 %
% of genes from short scaffolds (< 2000 bps)	86.49 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Most Common Taxonomy
Group	Bacteria (83.784 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (27.027 % of family members)
Environment Ontology (ENVO)	Unclassified (20.721 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.946 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.43% β-sheet: 0.00% Coil/Unstructured: 69.57%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02371	Transposase_20	45.05
PF13358	DDE_3	10.81
PF13565	HTH_32	9.01
PF13546	DDE_5	3.60
PF13551	HTH_29	1.80
PF13683	rve_3	1.80
PF13408	Zn_ribbon_recom	0.90
PF13362	Toprim_3	0.90
PF14294	DUF4372	0.90
PF00581	Rhodanese	0.90
PF13610	DDE_Tnp_IS240	0.90
PF02028	BCCT	0.90
PF13586	DDE_Tnp_1_2	0.90
PF00589	Phage_integrase	0.90
PF00144	Beta-lactamase	0.90
PF13560	HTH_31	0.90
PF01726	LexA_DNA_bind	0.90
PF03453	MoeA_N	0.90
PF01548	DEDD_Tnp_IS110	0.90
PF13366	PDDEXK_3	0.90
PF12833	HTH_18	0.90
PF02515	CoA_transf_3	0.90
PF04020	Phage_holin_4_2	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	45.95
COG0303	Molybdopterin Mo-transferase (molybdopterin biosynthesis)	Coenzyme transport and metabolism [H]	0.90
COG1292	Choline-glycine betaine transporter	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.90
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.90
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.90
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.68 %
Unclassified	root	N/A	15.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.68 %
Unclassified	root	N/A	15.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.78 %
Unclassified	root	N/A	15.32 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.47 %
Unclassified	root	N/A	15.32 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	62.16 %
Unclassified	root	N/A	15.32 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	9.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.91 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.90 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	9.91 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.80 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.90 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia	9.91 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	1.80 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Hoeflea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea	0.90 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.90 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
unclassified Hoeflea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.90 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Sinorhizobium fredii group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.90 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.90 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.90 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.90 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.90 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Caryophyllales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales	0.90 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Amaranthaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae	0.90 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.32 %
Dankookia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	9.91 %
Bosea	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae → Bosea	0.90 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.90 %
Hoeflea sp. IMCC20628	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	0.90 %
Ruegeria arenilitoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	0.90 %
Ensifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Alphaproteobacteria bacterium MarineAlpha4_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000043\|ARcpr5yngRDRAFT_c010834	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300003505\|JGIcombinedJ51221_10053193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1543	Open in IMG/M
3300003992\|Ga0055470_10007336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1661	Open in IMG/M
3300004635\|Ga0062388_102977439	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005331\|Ga0070670_100576769	Not Available	1005	Open in IMG/M
3300005364\|Ga0070673_100832290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300005434\|Ga0070709_11342782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	577	Open in IMG/M
3300005436\|Ga0070713_100588156	Not Available	1056	Open in IMG/M
3300006028\|Ga0070717_10342910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1334	Open in IMG/M
3300006047\|Ga0075024_100051018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1729	Open in IMG/M
3300006057\|Ga0075026_100136489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	1249	Open in IMG/M
3300006162\|Ga0075030_100989015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	663	Open in IMG/M
3300006755\|Ga0079222_11044269	Not Available	709	Open in IMG/M
3300006844\|Ga0075428_101057806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300009700\|Ga0116217_10609485	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300010036\|Ga0126305_10515958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	798	Open in IMG/M
3300010038\|Ga0126315_10325182	All Organisms → cellular organisms → Bacteria → Proteobacteria	953	Open in IMG/M
3300010041\|Ga0126312_10390364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Ensifer	989	Open in IMG/M
3300010042\|Ga0126314_11227938	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300010373\|Ga0134128_12913297	Not Available	527	Open in IMG/M
3300010392\|Ga0118731_112541911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria arenilitoris	1509	Open in IMG/M
3300010396\|Ga0134126_10462063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1467	Open in IMG/M
3300012484\|Ga0157333_1030623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	534	Open in IMG/M
3300012499\|Ga0157350_1020690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	657	Open in IMG/M
3300013250\|Ga0171462_1021	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae → Bosea	141297	Open in IMG/M
3300014311\|Ga0075322_1082808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300015089\|Ga0167643_1002089	All Organisms → cellular organisms → Bacteria	2548	Open in IMG/M
3300015371\|Ga0132258_11916003	Not Available	1492	Open in IMG/M
3300017965\|Ga0190266_10033078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1666	Open in IMG/M
3300018043\|Ga0187887_10160242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1345	Open in IMG/M
3300018469\|Ga0190270_12509506	Not Available	578	Open in IMG/M
3300018920\|Ga0190273_10042965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2230	Open in IMG/M
3300019889\|Ga0193743_1236349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	545	Open in IMG/M
3300021170\|Ga0210400_10210259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1583	Open in IMG/M
3300021171\|Ga0210405_10152183	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300021171\|Ga0210405_10202038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1575	Open in IMG/M
3300021180\|Ga0210396_10107079	All Organisms → cellular organisms → Bacteria → Proteobacteria	2526	Open in IMG/M
3300021403\|Ga0210397_10253387	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300021406\|Ga0210386_10214446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1634	Open in IMG/M
3300021406\|Ga0210386_10477827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	1077	Open in IMG/M
3300021433\|Ga0210391_10557326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	900	Open in IMG/M
3300021441\|Ga0213871_10033261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1355	Open in IMG/M
3300021474\|Ga0210390_10173695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1819	Open in IMG/M
3300021478\|Ga0210402_10646965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	978	Open in IMG/M
3300021478\|Ga0210402_11112488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300021479\|Ga0210410_10254010	Not Available	1576	Open in IMG/M
3300021479\|Ga0210410_10283214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1487	Open in IMG/M
3300022209\|Ga0224497_10299423	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300022226\|Ga0224512_10105065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. IMCC20628	1549	Open in IMG/M
3300025679\|Ga0207933_1011937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4087	Open in IMG/M
3300025679\|Ga0207933_1106512	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300025780\|Ga0210100_1001025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2726	Open in IMG/M
3300027087\|Ga0208605_102081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	561	Open in IMG/M
3300027303\|Ga0208999_1047578	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300027480\|Ga0208993_1036428	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300027609\|Ga0209221_1062591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	979	Open in IMG/M
3300027879\|Ga0209169_10032572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2760	Open in IMG/M
3300028047\|Ga0209526_10097163	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300028597\|Ga0247820_10061866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2205	Open in IMG/M
3300028597\|Ga0247820_10171498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	1367	Open in IMG/M
3300028600\|Ga0265303_10484347	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M
3300028746\|Ga0302233_10058417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1569	Open in IMG/M
3300028746\|Ga0302233_10251462	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300028747\|Ga0302219_10194727	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300028759\|Ga0302224_10052197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1530	Open in IMG/M
3300028773\|Ga0302234_10180363	Not Available	915	Open in IMG/M
3300028776\|Ga0302303_10063182	All Organisms → cellular organisms → Bacteria → Proteobacteria	1415	Open in IMG/M
3300028781\|Ga0302223_10052746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1381	Open in IMG/M
3300028789\|Ga0302232_10030808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2938	Open in IMG/M
3300028801\|Ga0302226_10072606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1575	Open in IMG/M
3300028871\|Ga0302230_10065937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1497	Open in IMG/M
3300028877\|Ga0302235_10074599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1576	Open in IMG/M
3300029882\|Ga0311368_10236104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1422	Open in IMG/M
3300029943\|Ga0311340_10394577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1274	Open in IMG/M
3300029944\|Ga0311352_10179461	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300029999\|Ga0311339_10899426	Not Available	840	Open in IMG/M
3300030043\|Ga0302306_10055002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1568	Open in IMG/M
3300030054\|Ga0302182_10072375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1537	Open in IMG/M
3300030056\|Ga0302181_10103056	Not Available	1413	Open in IMG/M
3300030057\|Ga0302176_10179515	Not Available	842	Open in IMG/M
3300030399\|Ga0311353_10237650	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300030399\|Ga0311353_10667432	Not Available	901	Open in IMG/M
3300030509\|Ga0302183_10011776	All Organisms → cellular organisms → Bacteria → Proteobacteria	3716	Open in IMG/M
3300030509\|Ga0302183_10048498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1691	Open in IMG/M
3300030520\|Ga0311372_11514576	Not Available	825	Open in IMG/M
3300030677\|Ga0302317_10096748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1416	Open in IMG/M
3300030687\|Ga0302309_10164848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1154	Open in IMG/M
3300030906\|Ga0302314_10710231	Not Available	1024	Open in IMG/M
3300031128\|Ga0170823_11838542	Not Available	1594	Open in IMG/M
3300031234\|Ga0302325_12022827	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300031236\|Ga0302324_101881886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300031448\|Ga0272438_1041688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3212	Open in IMG/M
3300031449\|Ga0272429_1054458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2998	Open in IMG/M
3300031449\|Ga0272429_1108838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1548	Open in IMG/M
3300031470\|Ga0272432_1053608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2369	Open in IMG/M
3300031471\|Ga0272439_1255798	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031525\|Ga0302326_11240704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1022	Open in IMG/M
3300031708\|Ga0310686_106357352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1558	Open in IMG/M
3300031708\|Ga0310686_118488154	All Organisms → cellular organisms → Bacteria	1782	Open in IMG/M
3300031718\|Ga0307474_10221303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1444	Open in IMG/M
3300031769\|Ga0318526_10131486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	1013	Open in IMG/M
3300031880\|Ga0318544_10056290	Not Available	1429	Open in IMG/M
3300032009\|Ga0318563_10366392	Not Available	780	Open in IMG/M
3300032075\|Ga0310890_10125002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha4_Bin1	1660	Open in IMG/M
3300032160\|Ga0311301_10793368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	1303	Open in IMG/M
3300032174\|Ga0307470_10384397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	986	Open in IMG/M
3300032770\|Ga0335085_10658421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	1170	Open in IMG/M
3300033168\|Ga0272423_1044479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3123	Open in IMG/M
3300034003\|Ga0334922_010996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Dankookia → Dankookia rubra	1014	Open in IMG/M
3300034818\|Ga0373950_0091497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300034819\|Ga0373958_0008139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.89%
Host-Associated	Host-Associated	8.11%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.98%
Aquatic	Environmental → Aquatic	9.91%
Plants	Host-Associated → Plants	8.11%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.55%
Peat	Environmental → Terrestrial → Peat	27.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.31%
Marine	Environmental → Aquatic → Marine	5.41%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	5.41%
Sediment	Environmental → Aquatic → Sediment	2.70%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	27.03%
Loam	Environmental → Terrestrial → Soil → Loam	9.01%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	5.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.80%
Sediment	Environmental → Aquatic → Marine → Sediment	1.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%
Coastal	Environmental → Aquatic → Marine → Coastal	0.90%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	0.90%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	27.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.31%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	5.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.90%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	0.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	27.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.41%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	5.41%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.70%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.80%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.80%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.80%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.90%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	0.90%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.90%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.90%
Rizhosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rizhosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012484	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510	Environmental	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300013250	Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05	Host-Associated	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022209	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_13	Environmental	Open in IMG/M
3300022226	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_13	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025780	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300027087	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF017 (SPAdes)	Environmental	Open in IMG/M
3300027303	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028600	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031448	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord	Environmental	Open in IMG/M
3300031449	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud	Environmental	Open in IMG/M
3300031470	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord	Environmental	Open in IMG/M
3300031471	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033168	Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud	Environmental	Open in IMG/M
3300034003	Biocrust microbial communities from Mojave Desert, California, United States - 18HMC	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085519

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5yngRDRAFT_0108341	3300000043	Arabidopsis Rhizosphere	MINRRFMIVPPALPSGGHAEPLEQTSKDFLCLLLEMANMRV
JGIcombinedJ51221_100531932	3300003505	Forest Soil	MINRRFMIVPPALPRGGHAELLDAQAMELSCLLLEVANMEYIDSMK
Ga0055470_100073362	3300003992	Natural And Restored Wetlands	MINRRFMIVPPALLSDGHAEQLEQISKDFLRLLLEMANMRVP*
Ga0062388_1029774391	3300004635	Bog Forest Soil	QSMINRRFMIVPPALPSGGHAEQLEQTSKDFLRLLLETANMRVP*
Ga0070670_1005767691	3300005331	Switchgrass Rhizosphere	SMINRRLMIVPPAMPSSGRTEQLDEREKKFLRLLLEMANMRVP*
Ga0070673_1008322901	3300005364	Switchgrass Rhizosphere	MINRRLMIVPPAMPSSGRTEQLDEREKKFLRLLLEMANMRVDQI*
Ga0070709_113427822	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	NQPAYQSMINRRFMIVPPALPSGGHAEQLEQTSKDFSCLLLETANMRVP*
Ga0070713_1005881562	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RRFMIVPPASPMAAALNGLEDSKEYTCLQLEMANMRVSCPANID*
Ga0070717_103429102	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MINRRFMIVPPALPSGGRTEQLGGTSKEYTCLQLEMANMRVDKT*
Ga0075024_1000510181	3300006047	Watersheds	MINRRFMIVPPALPSGGHAEQLEQTSKDFPCLLLEMANMRVS*
Ga0075026_1001364892	3300006057	Watersheds	MINRRFMIVPPALSSGGQTEKARLASQEFLCLQLEMANMRVD*
Ga0075030_1009890152	3300006162	Watersheds	MINRRFMIMPPALLSSGHAEQLEQTSKDFPCLLLEMANMRV
Ga0079222_110442691	3300006755	Agricultural Soil	MIIRRFMIVPPALPSGGHAEQLGRQAKEFSRLLLEAANMRALSLS
Ga0075428_1010578062	3300006844	Populus Rhizosphere	MINRRLMIVPPAMPSSGRTEQLDEREKKFLRLLLEMANMRVDRL*
Ga0116217_106094852	3300009700	Peatlands Soil	MINRRFMIVPPALPSGGHAEQLEQTSKEFLCLLLETANMRVP*
Ga0126305_105159581	3300010036	Serpentine Soil	MINRRLMIVPPAMPSSGRTEQLDQREKKFLRLLLEMANMREWRGGGDRS*
Ga0126315_103251821	3300010038	Serpentine Soil	NRRFMIVPPAMPSSGRTEQLDERAKKFLRLLLEMANMRVDRW*
Ga0126312_103903642	3300010041	Serpentine Soil	MINRRFMIVPPAMPSSGRTEQLDERAKKFLRLLLEMANMRVDQI*
Ga0126314_112279382	3300010042	Serpentine Soil	MINRRFMIVPPAMPSSGRTEQLDERAKKFLRLLLESKRRLDRTFLVGV*
Ga0134128_129132972	3300010373	Terrestrial Soil	MINRRFMIVPPALPSGGNAEQLEQTGKGFLRLLLKRRT*
Ga0118731_1125419111	3300010392	Marine	MINRRCMTAPPALPGCSHVETLAAQAIEDSRLLLEMANMRV*
Ga0134126_104620632	3300010396	Terrestrial Soil	MINRRFLIVLPALPSSGHAEQLEQTSKDFLCLLLEMANMRVHRFHGTDQLC*
Ga0157333_10306232	3300012484	Soil	MINRRFMIVPPALPSGGHAEPLEQTSKDFLCLLLEMANM
Ga0157350_10206903	3300012499	Unplanted Soil	MINRRFMIVPPALPSGGHAEPLEQTSKDFLCLLLEMANMRVDETRRLNPT*
Ga0171462_1021105	3300013250	Rizhosphere	MINRRFMIVPPALSSGGQTEKARQTSPEFLCLQLETANMRVERI*
Ga0075322_10828082	3300014311	Natural And Restored Wetlands	MINRRFMIVPPALLSDGHAEQLEQISKDFLRLLLEMANMRAPGRADT*
Ga0167643_10020893	3300015089	Glacier Forefield Soil	MINRRFMIVPPALPRGGYAEQLKESEEFLCLQLEVANMRVS*
Ga0132258_119160033	3300015371	Arabidopsis Rhizosphere	MIVPPALPSGGHAEPLEQTSKDFLCLLLEMANMRVR*
Ga0190266_100330782	3300017965	Soil	MINRRLMIVPPAMPSSGRTEQLDEREKKFLRLLLEMANMRVDQI
Ga0187887_101602422	3300018043	Peatland	MINRRFMVVPPVLPSCDHAEQLDESGKEFLCLLLEL
Ga0190270_125095062	3300018469	Soil	AHQSMINRRLMIVPPAMPSIGRTEQLDERGKKFLRLLLKMANMRVDRW
Ga0190273_100429651	3300018920	Soil	MINRRLMIVPPALSSGGHAEQLVKTSQGSLRLLLETADMRVDEI
Ga0193743_12363491	3300019889	Soil	MINRRFMIVPPALPRGGYAEQLKESEEFLCLQLEVANMRVPLHGGFDRLSVARIEVWQLGTV
Ga0210400_102102591	3300021170	Soil	MINRRFMIVPPALPRGGHAELLDAQAMELSCLLLEVANMRVPHHRGFD
Ga0210405_101521832	3300021171	Soil	HQSMINRRFMIVPPALPSGGYAEQLEQTSGDFSRLLLETANMRIPTIAGA
Ga0210405_102020381	3300021171	Soil	MINRRFMIVPPALLSGGHAEQLEQTSKDFPCLLLEMANMRALQ
Ga0210396_101070793	3300021180	Soil	MINRRFMIVPPALPSGGHAEQLEQTSEGFSRLLLETANMRVPPVIDLAVQF
Ga0210397_102533872	3300021403	Soil	MINRRFMIVPPALLSGGHAEQLEQTSKDFPCLLLEMANMRALQS
Ga0210386_102144461	3300021406	Soil	MINRRFMIVPPALLSGGHAEQLEQTSKDFPCLLLEMANMRVRRF
Ga0210386_104778272	3300021406	Soil	MINRRFMIVPPALPSGGYAEQLEQTSGDFSRLLLETANMRIPTIAGA
Ga0210391_105573262	3300021433	Soil	MINRRFMIVPPALPSGGYAEQLEQTSGDFLRLLLETANMRVPRVIHITRYNL
Ga0213871_100332611	3300021441	Rhizosphere	MIIRRFMIVPPALPSGGHAEQLGRQAKEFSRLLLEAANMRVLLRFLQ
Ga0210390_101736951	3300021474	Soil	MINRRFMIVPPALPRGGHAELLDAQAMELSCLLLEVANMRVHRFHEGYPCWR
Ga0210402_106469651	3300021478	Soil	MINRRFMIVPPALPSGGHAEPLEQTSKDFLCLLLEMANMRVP
Ga0210402_111124882	3300021478	Soil	MINRRFMIVPPALPSGGHAEQLEQTSKDFPCLLLETANMRVLRCQL
Ga0210410_102540102	3300021479	Soil	SMINRRFMIVPPALLSGGHAEQLEQTSKDFPCLLLEMANMRALQS
Ga0210410_102832141	3300021479	Soil	MINRRFMIVPPALLSGGHAEQLEQTSKDFPCLLLEMANMRVPRHSDFDS
Ga0224497_102994232	3300022209	Sediment	MINRRFMIVPPALPVCSHVETLAQKATDHVCLLLEMANMRASGFDD
Ga0224512_101050651	3300022226	Sediment	MINRRFMIVPPALPVCSHVETLAQKATDHVCLLLEMANMRVSAPE
Ga0207933_10119371	3300025679	Arctic Peat Soil	MINRRFMIVPPALLSEGHAEQLRKAGKGFPCLLLETANMRVLRISDQRNTA
Ga0207933_11065121	3300025679	Arctic Peat Soil	INRRFMIVPPALLSEGHAEPLRKAGKGFPCLLLETANMRVLGSWS
Ga0210100_10010252	3300025780	Natural And Restored Wetlands	MINRRFMIVPPALLSDGHAEQLEQISKDFLRLLLEMANMRVP
Ga0208605_1020811	3300027087	Forest Soil	MINRRFMIVPPALLSGGHAEQLEQTSKDFPCLLLEMANMRVPRHSDFDSLAVSG
Ga0208999_10475781	3300027303	Forest Soil	MINRRFMIVPPALPRGGYAEKLKTRAMEFPYLLLEVANMRAH
Ga0208993_10364282	3300027480	Forest Soil	MINRRFMIVPPALPRGGYAEKLKTRAMEFPYLLLEVANMRVHRFR
Ga0209221_10625912	3300027609	Forest Soil	MINRRFMIVPPALPSGGHPESLAKTSQEFLCLHLEVANMR
Ga0209169_100325725	3300027879	Soil	MINRRFMIVPPALPRGGHAEQLDAQAMELSCLLLEV
Ga0209526_100971632	3300028047	Forest Soil	MINRRFMIVPPALLSGGHAEQLEQTSKDFPCLLLEMANMRVP
Ga0247820_100618662	3300028597	Soil	MINRRLMIVLPALSSGGHTEQLETASKGSSRLLLETADIRVDGI
Ga0247820_101714982	3300028597	Soil	MINRRLMIVPPAMPSSGRTEQLDEREKKFLRLLLEMANMRVDRL
Ga0265303_104843472	3300028600	Sediment	MINRRCMTAPPALPVCSHVETLAAQAIEDSRLLLEMANMRVH
Ga0302233_100584172	3300028746	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDFDWLNAR
Ga0302233_102514621	3300028746	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVSG
Ga0302219_101947272	3300028747	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVLG
Ga0302224_100521972	3300028759	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDY
Ga0302234_101803632	3300028773	Palsa	ALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVSG
Ga0302303_100631823	3300028776	Palsa	NRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVSG
Ga0302223_100527462	3300028781	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVP
Ga0302232_100308083	3300028789	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDFDRLTVARLQVG
Ga0302226_100726062	3300028801	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLH
Ga0302230_100659372	3300028871	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDF
Ga0302235_100745991	3300028877	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSNSD
Ga0311368_102361042	3300029882	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDFD
Ga0311340_103945772	3300029943	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRV
Ga0311352_101794613	3300029944	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSYSDRSCMP
Ga0311339_108994261	3300029999	Palsa	LPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVSG
Ga0302306_100550022	3300030043	Palsa	MIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHS
Ga0302182_100723751	3300030054	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDFDR
Ga0302181_101030561	3300030056	Palsa	THHRSGGNQPAYQSMINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDFDRLTVARLQVG
Ga0302176_101795151	3300030057	Palsa	RRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVSG
Ga0311353_102376501	3300030399	Palsa	FMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVSG
Ga0311353_106674321	3300030399	Palsa	NRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLLPLHRF
Ga0302183_100117761	3300030509	Palsa	LPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVLG
Ga0302183_100484983	3300030509	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSYSDR
Ga0311372_115145761	3300030520	Palsa	PPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLAVSG
Ga0302317_100967481	3300030677	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLPS
Ga0302309_101648482	3300030687	Palsa	MINRRFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDYDSLA
Ga0302314_107102311	3300030906	Palsa	ALPSGGHTESLAKTSQEFLCLHLEVANMRVPLHSDFDRLTVARLQVG
Ga0170823_118385421	3300031128	Forest Soil	GGNQPAYQSMINRRFMIVPPALPSSGHVEQLEQTSKDFPCLLLEVANMRVSGQ
Ga0302325_120228272	3300031234	Palsa	MINRRFMIVPPALSRQGHAEQLGEPSEEFSRLQLETANMRVPRIVSP
Ga0302324_1018818861	3300031236	Palsa	RFMIVPPALPSGGHTESLAKTSQEFLCLHLEVANMRVPLRH
Ga0272438_10416882	3300031448	Rock	MINRRFMTVPPALPNGGHAELLERRTSDEILCLQLEVANMRVVRI
Ga0272429_10544581	3300031449	Rock	MINRRFMIVPPAVPSGGYNESARRTGQDFLRLQLEVANMRVDEI
Ga0272429_11088382	3300031449	Rock	MINRRFMIVPPAVPSGGYNESARRTGQDFLRLQLEVANMRV
Ga0272432_10536083	3300031470	Rock	MINRRFMTVPPALPRGGCAELLGKHTSKEFLCPQLEVANMRVEALIS
Ga0272439_12557981	3300031471	Rock	PPALPSGGHAETIRQADHDFLRLQLEVANMRVVRI
Ga0302326_112407041	3300031525	Palsa	SMIKRRFTIVLPALPSGGRTKKLAKGSTEFTRLQLEMANMRVS
Ga0310686_1063573521	3300031708	Soil	SIINRRFMIVPPALPSGGHAEQLEQTSEDFSRLLLETANMRVSRCPS
Ga0310686_1184881544	3300031708	Soil	SIINRRFMIVPPALPSGGHAEQLEQTSEDFSRLLLETANMRVPRITDLRNAA
Ga0307474_102213032	3300031718	Hardwood Forest Soil	MINRRFMIVPPALPRGGHAELLDAQAMELSCLLLEVANMRVPHHRGFDSLVVRG
Ga0318526_101314862	3300031769	Soil	MINRRFMIVPPALPSGGHAEQLEQTSKDIPCLLLETANMRVPRRSDYDRLTVARLQIG
Ga0318544_100562901	3300031880	Soil	HQSMINRRFMILPPALPSSGHAEQLEGRAKKLRLQLETANMRVPGIRVE
Ga0318563_103663922	3300032009	Soil	THHRSGGNQPAHQSMINRRFMILPPALPSSGHAEQLEGRAKKLRLQLETANMRVPGIRVE
Ga0310890_101250021	3300032075	Soil	MINRRFMIVPPALPNSGHAEQLEDSKMLLRLLLDMANMRVPRITEQRNTV
Ga0311301_107933681	3300032160	Peatlands Soil	MINRRFMIVPPALPSGGHAEQLEQTSKEFLCLLLETANMRVPISG
Ga0307470_103843971	3300032174	Hardwood Forest Soil	MINRRFMIVPPALLSGGHAEQLEQTSKDFPCLLLEMANMRV
Ga0335085_106584211	3300032770	Soil	MINRRFMILPPALPNTGHAEQLKARAKKFLCLQLETANMRVHRFQESDRLRGI
Ga0272423_10444795	3300033168	Rock	MINRRFMTVPPALPRGGCAELLGKHTSKEFLCPQLEVANMRV
Ga0334922_010996_840_968	3300034003	Hypolithic Biocrust	MIKRRLMIVPPALSNGGHAGQLVKTSKGSLRLLLETADMRVS
Ga0373950_0091497_536_646	3300034818	Rhizosphere Soil	MINRRFMIVPPALPSGGHAEPLEQTSKDFLCLLLEMA
Ga0373958_0008139_1502_1639	3300034819	Rhizosphere Soil	MINRRFMIVPPALPSGGHAEPLEQTSKDFLCLLLEMANMRVLRSR

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign