Metagenome Family F085910

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085910
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	86 residues
Representative Sequence	MSLFRTADRIDYSIRRYIHATDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVQQLETKK
Number of Associated Samples	72
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.45 %
% of genes near scaffold ends (potentially truncated)	34.23 %
% of genes from short scaffolds (< 2000 bps)	86.49 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.369 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (19.820 % of family members)
Environment Ontology (ENVO)	Unclassified (30.631 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.955 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.49% β-sheet: 0.00% Coil/Unstructured: 53.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01243	Putative_PNPOx	4.50
PF00496	SBP_bac_5	1.80
PF04392	ABC_sub_bind	1.80
PF03401	TctC	0.90
PF14659	Phage_int_SAM_3	0.90
PF13356	Arm-DNA-bind_3	0.90
PF08281	Sigma70_r4_2	0.90
PF12681	Glyoxalase_2	0.90
PF07536	HWE_HK	0.90
PF04542	Sigma70_r2	0.90
PF02518	HATPase_c	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.80
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.90
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.90
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.90
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.90
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.90
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.90
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.37 %
Unclassified	root	N/A	30.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.37 %
Unclassified	root	N/A	30.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.37 %
Unclassified	root	N/A	30.63 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	67.57 %
Unclassified	root	N/A	30.63 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.86 %
Unclassified	root	N/A	30.63 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	56.76 %
Unclassified	root	N/A	30.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	56.76 %
Unclassified	root	N/A	30.63 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0609757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300003911\|JGI25405J52794_10049121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300004268\|Ga0066398_10173345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300005332\|Ga0066388_100173186	All Organisms → cellular organisms → Bacteria	2760	Open in IMG/M
3300005332\|Ga0066388_100546572	Not Available	1788	Open in IMG/M
3300005332\|Ga0066388_108521780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300005713\|Ga0066905_100027999	All Organisms → cellular organisms → Bacteria	3144	Open in IMG/M
3300005713\|Ga0066905_100039609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2777	Open in IMG/M
3300005713\|Ga0066905_100299316	Not Available	1262	Open in IMG/M
3300005713\|Ga0066905_100892296	Not Available	777	Open in IMG/M
3300005713\|Ga0066905_101422351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300005713\|Ga0066905_101568054	Not Available	602	Open in IMG/M
3300005713\|Ga0066905_102134461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300005764\|Ga0066903_100910300	Not Available	1593	Open in IMG/M
3300005764\|Ga0066903_102804445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	945	Open in IMG/M
3300005764\|Ga0066903_104466686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	746	Open in IMG/M
3300005764\|Ga0066903_108806225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300005937\|Ga0081455_10019310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6453	Open in IMG/M
3300005937\|Ga0081455_10099021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2346	Open in IMG/M
3300005937\|Ga0081455_10543870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	770	Open in IMG/M
3300005937\|Ga0081455_10896964	Not Available	552	Open in IMG/M
3300006038\|Ga0075365_10089570	All Organisms → cellular organisms → Bacteria → Proteobacteria	2094	Open in IMG/M
3300006038\|Ga0075365_10245963	Not Available	1256	Open in IMG/M
3300006038\|Ga0075365_10307740	Not Available	1115	Open in IMG/M
3300006038\|Ga0075365_10436318	Not Available	925	Open in IMG/M
3300006038\|Ga0075365_10716335	Not Available	707	Open in IMG/M
3300006048\|Ga0075363_100830544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300006049\|Ga0075417_10722271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300006051\|Ga0075364_10170405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1471	Open in IMG/M
3300006051\|Ga0075364_10300949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1092	Open in IMG/M
3300006177\|Ga0075362_10605454	Not Available	566	Open in IMG/M
3300006196\|Ga0075422_10299989	Not Available	688	Open in IMG/M
3300006844\|Ga0075428_100293538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1748	Open in IMG/M
3300006845\|Ga0075421_100097360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3705	Open in IMG/M
3300006845\|Ga0075421_100749747	Not Available	1129	Open in IMG/M
3300006845\|Ga0075421_101588382	Not Available	712	Open in IMG/M
3300006845\|Ga0075421_101607627	Not Available	706	Open in IMG/M
3300006846\|Ga0075430_100445610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1068	Open in IMG/M
3300006846\|Ga0075430_101078622	Not Available	661	Open in IMG/M
3300009094\|Ga0111539_10741721	Not Available	1143	Open in IMG/M
3300009094\|Ga0111539_11219578	Not Available	874	Open in IMG/M
3300009100\|Ga0075418_11694617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300009100\|Ga0075418_11744138	Not Available	677	Open in IMG/M
3300009147\|Ga0114129_10097279	Not Available	4075	Open in IMG/M
3300009147\|Ga0114129_11558337	Not Available	810	Open in IMG/M
3300009147\|Ga0114129_12080488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300009147\|Ga0114129_12201408	Not Available	663	Open in IMG/M
3300009156\|Ga0111538_12853146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300009162\|Ga0075423_11412998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	745	Open in IMG/M
3300009792\|Ga0126374_10877645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300010043\|Ga0126380_11236585	Not Available	646	Open in IMG/M
3300010046\|Ga0126384_10128985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1916	Open in IMG/M
3300010046\|Ga0126384_10530864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1019	Open in IMG/M
3300010046\|Ga0126384_11979795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300010047\|Ga0126382_10888905	Not Available	769	Open in IMG/M
3300010047\|Ga0126382_10952455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	748	Open in IMG/M
3300010048\|Ga0126373_10489724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1270	Open in IMG/M
3300010358\|Ga0126370_11252104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300010359\|Ga0126376_12092041	Not Available	609	Open in IMG/M
3300010361\|Ga0126378_10408549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1470	Open in IMG/M
3300010362\|Ga0126377_10682647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1078	Open in IMG/M
3300010366\|Ga0126379_11471031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	787	Open in IMG/M
3300012199\|Ga0137383_10084275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2300	Open in IMG/M
3300012202\|Ga0137363_10952759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300012204\|Ga0137374_10130363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2290	Open in IMG/M
3300012206\|Ga0137380_10369308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1278	Open in IMG/M
3300012207\|Ga0137381_10355905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1276	Open in IMG/M
3300012209\|Ga0137379_11279209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	640	Open in IMG/M
3300012209\|Ga0137379_11792362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300012210\|Ga0137378_10392166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1288	Open in IMG/M
3300012351\|Ga0137386_10631736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	770	Open in IMG/M
3300012353\|Ga0137367_10138283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1782	Open in IMG/M
3300012354\|Ga0137366_10139505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1827	Open in IMG/M
3300012355\|Ga0137369_10276316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1257	Open in IMG/M
3300012357\|Ga0137384_10824570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300012359\|Ga0137385_10732649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	824	Open in IMG/M
3300012360\|Ga0137375_11444298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300012469\|Ga0150984_122568359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	858	Open in IMG/M
3300012532\|Ga0137373_10225865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1525	Open in IMG/M
3300012948\|Ga0126375_10669551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	803	Open in IMG/M
3300015371\|Ga0132258_10504480	Not Available	3026	Open in IMG/M
3300015371\|Ga0132258_11904730	All Organisms → cellular organisms → Bacteria → Proteobacteria	1497	Open in IMG/M
3300015371\|Ga0132258_13051050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1159	Open in IMG/M
3300015372\|Ga0132256_103706968	Not Available	514	Open in IMG/M
3300015373\|Ga0132257_101261623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	937	Open in IMG/M
3300015374\|Ga0132255_100228727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2647	Open in IMG/M
3300015374\|Ga0132255_100878748	Not Available	1339	Open in IMG/M
3300015374\|Ga0132255_103803008	Not Available	641	Open in IMG/M
3300016371\|Ga0182034_10985848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	727	Open in IMG/M
3300016387\|Ga0182040_10057426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2456	Open in IMG/M
3300018468\|Ga0066662_12218233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300027873\|Ga0209814_10360183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300027909\|Ga0209382_11364626	Not Available	714	Open in IMG/M
3300027909\|Ga0209382_11381941	Not Available	708	Open in IMG/M
3300031543\|Ga0318516_10074392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1888	Open in IMG/M
3300031545\|Ga0318541_10041561	All Organisms → cellular organisms → Bacteria → Proteobacteria	2328	Open in IMG/M
3300031564\|Ga0318573_10170946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1145	Open in IMG/M
3300031720\|Ga0307469_11013848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300031740\|Ga0307468_100556311	Not Available	925	Open in IMG/M
3300031740\|Ga0307468_102118573	Not Available	542	Open in IMG/M
3300031778\|Ga0318498_10441531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300031782\|Ga0318552_10724478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300031820\|Ga0307473_10380750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	918	Open in IMG/M
3300031845\|Ga0318511_10563476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300031890\|Ga0306925_10359775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1562	Open in IMG/M
3300031954\|Ga0306926_10798729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1137	Open in IMG/M
3300032008\|Ga0318562_10369246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	834	Open in IMG/M
3300032025\|Ga0318507_10364504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300032035\|Ga0310911_10277357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	962	Open in IMG/M
3300032059\|Ga0318533_10190747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1464	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.46%
Host-Associated	Host-Associated	40.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.46%
Plants	Host-Associated → Plants	40.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.81%
Roots	Host-Associated → Plants → Roots	8.11%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.82%
Loam	Environmental → Terrestrial → Soil → Loam	14.41%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.22%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.41%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	19.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.01%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	8.11%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.31%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_06097571	2228664021	Soil	MSLFQTADRIDYSIRRYIHATDHLWSPPQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALSAPVPLHITALVEQLETKK
JGI25405J52794_100491211	3300003911	Tabebuia Heterophylla Rhizosphere	RIDYLICRYMHVTDHLWSPPHAIRRPRATDARQGKLIPAPDKSVWLSIGHYLRVQYDALSAPIPPHITALVEQLETKK*
Ga0066398_101733451	3300004268	Tropical Forest Soil	GGARMSVAQTADRIDYWIRRHIHVTDFSPIDLWSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK*
Ga0066388_1001731863	3300005332	Tropical Forest Soil	MSLFQIADRIDYSIRRSIHAGDHLWSPPQAVRRSRASGASQRKLLPAPDRSVWLSIGDYLRVQYDALSAPVPPHITALVAQLEMK*
Ga0066388_1005465723	3300005332	Tropical Forest Soil	MCLLRTADQIDDSIRRYARASDHLRSPPQALRRSGANRAPQSGLISAPGRSAWQSIGYALRVQYDALSAPVPPRIAALVAQLEMKK*
Ga0066388_1009833863	3300005332	Tropical Forest Soil	MSVIGQPPGQLAAVVRTADRIDCWIRRHVHATDFIPGDLWSAPQASRGSRVNGAAQRKLLPARDRRIGLLAIGQCLKDQYDAFAAPIPPHLAALVEQLETQR*
Ga0066388_1085217801	3300005332	Tropical Forest Soil	SKGSTRMSLFQTADRIDYSIRRYIHATDHLWSPPQALRRSRANGAPQSKLISATDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLDEELATRSDAVRHLYA*
Ga0066905_1000279992	3300005713	Tropical Forest Soil	MSLFQTADRIDYSIRRYIHATDHLWSPPQALRRSRANGAPQSKLISATDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLEMRN*
Ga0066905_1000396091	3300005713	Tropical Forest Soil	MSVARTADRIDYWIRRCVHATDFSPADLCPAPHSNRRPRANGARQGKLIPAPDRSVWLSIGHYLGVQYDALAPPVPPYIAALVEQLETQK*
Ga0066905_1002993161	3300005713	Tropical Forest Soil	MSLFRTADRIDYWARRCIHATDHRWFTPAIRPSRANGAPQSKLIPAPDRSVWLSIGHHLRLQYDSLAAPVPPHITVLVERLARK*
Ga0066905_1008922962	3300005713	Tropical Forest Soil	MSLFGTADRIDYLIRRYIHVTDHLWSPPHAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALSVPV
Ga0066905_1014223511	3300005713	Tropical Forest Soil	MSVARTADRIDYWIRRRVHATDFSLADLRSAPHATRRSRANGARQSKLNPAPDRSVWLSIGHYLRVQYDALAPPVPPHIAALVEQLETQKYRPAAKRSDTSVRMSLKFEEQGGVSCMHKSGIGSITIR*
Ga0066905_1015680541	3300005713	Tropical Forest Soil	MSLFQTADRIDYCVRRYIHATDHLWSPPQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRLQYDALSAPVPPHITALVEQLERK*
Ga0066905_1021344612	3300005713	Tropical Forest Soil	MPVARTADRIDYWIRRHIHVTDFSPIDLWSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPH
Ga0066903_1009103001	3300005764	Tropical Forest Soil	MSLFQIADRIDYSIRRSIHAGDHLWSPPQAVRRSRASGASQRKLLPAPDRSVWLSIGDYLRVQYDALSAPVPPHIT
Ga0066903_1028044451	3300005764	Tropical Forest Soil	MSLFQTADRIDYSIRRYIHATDHLWSPPQALRRSRANGTPQSKLISAPDRSVWLSIGHYLRVQYDALSAPVPPHIT
Ga0066903_1044666862	3300005764	Tropical Forest Soil	SKGSTRMSLFQTADRIDYSIRRYIHATDHLWSPPQALRRSGANGAPQSKLISAPDRSVWLSIGHYLRVQYDALSTPLPPHITALVQQLEMKK*
Ga0066903_1088062251	3300005764	Tropical Forest Soil	MSVARTADRIDYWIRRCVHTTDFSLADLRSAPHATRRSRANGARQSKSNPAPDRSVWLSIGHYLRVQYDALAPPVPPHIAALVEQLETQKYRPAAKRSDTSVRMSLKFEE
Ga0081455_100193106	3300005937	Tabebuia Heterophylla Rhizosphere	MSLFGTADRIDYLIRRYMHVTDHLWSPPHAIRRPRATDARQGKLIPAPDKSVWLSIGHYLRVQYDALSAPIPPHITALVEQLETKK*
Ga0081455_100990213	3300005937	Tabebuia Heterophylla Rhizosphere	MSLFGTADRIDYLIRRYIHVTDHLWSPPHAIRRSRANGARQSKLIPAPDRSVWLSIGHYLRVQYDALSVPVPPQITALVEQLERK*
Ga0081455_105438701	3300005937	Tabebuia Heterophylla Rhizosphere	MSLFGTADRIDYCIRRYMHATDHLWSPPHAIRRPRATDARQSKLIPAPDRSVWLSIGHYLRDQYDALSVPVPPQITALVEQLERR*
Ga0081455_108969642	3300005937	Tabebuia Heterophylla Rhizosphere	MSLFGTADRIDYLIRRYMHVTDHRWSPPHAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALSVPVPPHITALVEQLERK*
Ga0075365_100895701	3300006038	Populus Endosphere	MSLFRTADRIDYSIRRYIHATDHLWSTTRRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDVLAAPVPPHITALVQQLETKK*
Ga0075365_102459634	3300006038	Populus Endosphere	MSLFRTADRIDYSIRRYIHATDHLWSTPHAIRRSRANDAPQSKLIPAPDRSVWLAIGHYLRVQYDVLAAPVPPHITALVQQLETKK*
Ga0075365_103077402	3300006038	Populus Endosphere	MSLFQTADRIDYCVRRYIHATDHLWSPPQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALSA
Ga0075365_104363181	3300006038	Populus Endosphere	MLFRTADRIDYLIRRYIYATDHPWSTPHAIRRSRANGAPQRKLIPAPDRSVWLSIGHYLRAQYDALSAPVPPHITALVQQLETKK*
Ga0075365_107163351	3300006038	Populus Endosphere	MSLFRTADRIDYSIRRHIHATDHLWPAPHAIRRSRANGARQSKLIPAPDRSVLLSIGRNLKAQYDAFLAPLPPHITALVEQLETKK*
Ga0075363_1008305441	3300006048	Populus Endosphere	ARMSLFRTADRIDYSIRRYIHATDHLWSTPHAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVEQLERK*
Ga0075417_107222711	3300006049	Populus Rhizosphere	TRREGARMSLFRTADRIDYSIRRYIHATDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVAQLEMTK*
Ga0075364_101704053	3300006051	Populus Endosphere	MSLFQTADRIDYCVRRYIHATDHLWSPPQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLERK*
Ga0075364_103009491	3300006051	Populus Endosphere	MSLFRTADRIDYSIRRYIHATDHLWSPPHAVRRSRANGAAPDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLEMKK*
Ga0075362_106054541	3300006177	Populus Endosphere	MSLFRTADRIDYSIRRYIHATDHLWSTTRRRSRAHGAPQSKLIPAPDKSVWLSIGHYLRVQYDVLAAPVPPHITALVQQLETKK*
Ga0075422_102999891	3300006196	Populus Rhizosphere	MSLFRTADRIDYSIRRYIHATDHLWSTTRRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLEMKK*
Ga0075428_1002935382	3300006844	Populus Rhizosphere	MSLFRTADRIDYSIRRYIHATDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVAQLEMTK*
Ga0075421_1000973607	3300006845	Populus Rhizosphere	VIGLSGAALNSKGGARMSLFRTADRIDYSIRRYIHATDHLWSPPHAVRRSRANGAAPDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLEMKK*
Ga0075421_1007497472	3300006845	Populus Rhizosphere	MSLFRTADWIDYSIRRYIHATDHLWSPPHAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVAQLEMTK*
Ga0075421_1015883821	3300006845	Populus Rhizosphere	MLFRTADRIDYLIRRYIYATDHPWSTPHAIRRSRANGAPQRKLIPAPDRSVWLSIGHYLR
Ga0075421_1016076271	3300006845	Populus Rhizosphere	MSLLRTADRIDYSIRRYIHATDHLWSPPQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAA
Ga0075430_1004456101	3300006846	Populus Rhizosphere	RTADRIDFSIRRYIHATDHLWSPPHAVRRSRANGAAPDRSVWLSIGHYLRVQYDAISAPVPPHITALVEQLEMKK*
Ga0075430_1010786221	3300006846	Populus Rhizosphere	MSLLRTADRIDYSIRRYIHATDHLWSPPQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYD
Ga0111539_107417211	3300009094	Populus Rhizosphere	MSLFRTADRIDYSIRRYIHATDHLWSPPHAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDVLAAPVPPHITALVQQLETKK*
Ga0111539_112195781	3300009094	Populus Rhizosphere	MLFRTADRIDYLIRRYIHATDHPWSTPHAIRRSRANGAPQRKLIPAPDRSVWLSIGHYLRAQYDALSAPVPPHITALVQQ
Ga0075418_116946172	3300009100	Populus Rhizosphere	MLFRTADRIDYLIPATDHPWSTPHAIRRSRANGAPQRKLIPAPDRSVWLSIGHYLRAQYDALSAPVPPHITALVQQLETK*
Ga0075418_117441381	3300009100	Populus Rhizosphere	MSLLRTADRIDYSIRRYIHATDHLWSPPQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRV
Ga0114129_100972795	3300009147	Populus Rhizosphere	MSLLRTADRIDYSIRRYIHATDHLWSPPQAIRRSRANRAQSKLVPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVAQLEMTK*
Ga0114129_115583371	3300009147	Populus Rhizosphere	MSLFRTADRIDYSIRRYIHATDHLWSPPHAVRRSRANGAAPDRSVWLSIGHYLRVQYDAISAPVPPHITALVEQLEMKK*
Ga0114129_120804881	3300009147	Populus Rhizosphere	MSLFRTADWIDYSIRRYIHATDHLWSPPHAIRRSRANGAPQSKLILAPDRSVWLSIGHYLRVQYDALSAPVPLHITALVEQLETKK*
Ga0114129_122014082	3300009147	Populus Rhizosphere	IDYSIRRYIHATDHLWSPPHAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDVLAAPVPPHITALVQQLETKK*
Ga0111538_128531461	3300009156	Populus Rhizosphere	MLFRTADRIDYLIPATDHPWSTPHAIRRSRANGAPQRKLIPAPDRSVWLSIGHYLRAQYDALSAPVPPHITALVQQLETKK*
Ga0075423_114129982	3300009162	Populus Rhizosphere	MSLFRTADRLDYSIRRYIHATDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVAQLEMTK*
Ga0126374_108776451	3300009792	Tropical Forest Soil	MSVAQTADRIDYWIRRHIHVTDFSPIDLWSTPHATRRSRANGAPQNTLIPAPDRSAWLSIGRYLRVQYDALAPPLPPHIAGLVEQLETQK*
Ga0126380_112365852	3300010043	Tropical Forest Soil	MSLFRTADRIDYSIRRYIHATDHLRSPPQALRRPKANGASQSKLIPALDRSVWLSIGHHLRVQYDALSAPVPPHITALVAQLEMKK*
Ga0126384_101289851	3300010046	Tropical Forest Soil	MSVARTADRIDYWIRRRVHATDFSPADLRSTPRAIRRSRANGAPQSKLIPAPDRGAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK*
Ga0126384_105308642	3300010046	Tropical Forest Soil	MSLFQTADRIDYSIRRYIHATDHLWSPPQALRRSRANGAPQSKLISAPDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLEMRK*
Ga0126384_119797951	3300010046	Tropical Forest Soil	MSVARTADRIDSWIRRRVHATDFSPADLRCARHATRRSRANGAPQSKSIPAPDRGAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK*
Ga0126382_108889051	3300010047	Tropical Forest Soil	MSLFQTADRIDYSIRRYIHATDHLWSPPQALRRSRANGAPQSKLISATDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLEMRK*
Ga0126382_109524552	3300010047	Tropical Forest Soil	MSVAQTADRIDYWIRRHIHVTDFSPIDLWSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK*
Ga0126373_104897242	3300010048	Tropical Forest Soil	MPVARTADRIDYWIRRHIHVTDFSPIDLWSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK*
Ga0126370_112521041	3300010358	Tropical Forest Soil	MSVARTADRIDYWIRRRVHATDFSPADLRCAPHATRRSRANGAPQSKSIPAPDRGAWLSIGHYLRVQYDALTPPVPPHIAALAEQLETQK*
Ga0126376_120920411	3300010359	Tropical Forest Soil	MSLFQTADRIDYSIRRYIHATDHLWSPPQALRRSGANGAPQSKLISAPDRSVWLSIGHYLRVQYDA
Ga0126378_104085492	3300010361	Tropical Forest Soil	MSVARTADRIDYWIRRRVHATDFSPADLRSTPRAIRRSRANGAPQSKLIPAPDRGAWLSIGHYLRVQYDALAPPVPPHIAALVEQLETQK*
Ga0126377_106826473	3300010362	Tropical Forest Soil	MSLFGTADRIDYLSRRYMHVTDHRWSPPHAIRRSRATGAPQSKLIPGPDKSVWLSIGHYLRVQYDALSVPVPPQITALVEQLERK*
Ga0126379_114710312	3300010366	Tropical Forest Soil	MSVARTADRIDSWIRWRVHATDFSPADLRCAPHATRRSRANGAPQSKSIPAPDRGAWLSIGHYLRVQYDALTPPVPPHIAALAEQLETQK*
Ga0137383_100842753	3300012199	Vadose Zone Soil	MSVVRTADRIDYWIRRCVHATDFSPADLWSAPHATRRSRANGAPQSKLIPAPDRSVGLSIGHYLRVQYDALAAPVPPHIAALVEQLQRQK*
Ga0137363_109527591	3300012202	Vadose Zone Soil	MSVARTADRVDYWIRRCVHATDFSPAELCPAPHANRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAPPVPPHIAALVEQLQTQK*
Ga0137374_101303633	3300012204	Vadose Zone Soil	MSVARTADRIDYWIRRCVHATDFSPADLCPAPHANRRSRANGAPQGKLIPAPDRSGWLSIGHYLRVQYDALAPPVPPHIAALVEQLQTQK*
Ga0137380_103693082	3300012206	Vadose Zone Soil	MSVARTADRIDYWIRRCVHATDFSPAELCPAPHANRRSRANGAPQGKLIPAPDRSVGLSIGHYLRVQYDALAPPVPPHIATLVAQLETQK*
Ga0137381_103559051	3300012207	Vadose Zone Soil	MSVVRTADRIDYWIRRCVHATDFSPADLWSAPHATRRSRANGAPQSKLIPGPDRSVGLSIGHYLRVQYDALAPPVPPHIATLVEQLETQK*
Ga0137379_112792091	3300012209	Vadose Zone Soil	MSVVRTADRIDYWIRRCVHATDFSPAELCPAPPCQSPIEGQWCSSGKLIPAPDRSVGLSIGHYLRVQYDALAPPVPPHIATLVEQLETQK*
Ga0137379_117923621	3300012209	Vadose Zone Soil	MSVARTADRIDYWIRRCVHATDFSPAELCPAPHANRRSRANGAPQGKLIPAPDRSVGLSIGHYLR
Ga0137378_103921662	3300012210	Vadose Zone Soil	MSVVRTADRIDYWIRRCVHATDFSPADLWSAPHATRRSRANGAPQSKLIPAPDRSVGLSIGHYLRVQYDALAPPVPPHIATLVEQLETQK*
Ga0137386_106317362	3300012351	Vadose Zone Soil	MSVAQTADRIDYWIRRCVHASDFSPAGLWSAPDFSPADLWSAPHATRRSRANGAPQSKLIPAPDRSVGLSIGHYLRVQYDALAPPVPPHIATLVEQLETQK*
Ga0137367_101382831	3300012353	Vadose Zone Soil	MSVAQTADRIDYWIRRCVHATDFSPADLCPAPHANRRSRANGAPQGKLIPAPDRSVGLSIGHYLRVQYDALAPPVPPHIATLVAQLETQK*
Ga0137366_101395052	3300012354	Vadose Zone Soil	MSVAQTADRIDYWIRRCVHASDFSPAGLWSAPDFSPADLWSAPHATRRSRANGAPQGKLIPAPDRSVGLSIGHYLRVQYDALAPPVPPHIATLVEQLETQK*
Ga0137369_102763161	3300012355	Vadose Zone Soil	MSVAQTADRIDYWIRRCVHASDFSPAGLWSAPDFSPADLWSAPHATRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAPPVPPHIATLVEHLETQK*
Ga0137384_108245701	3300012357	Vadose Zone Soil	MSVAQTADRIDYWIRRCVHASDFSPAGLWSAPDFSPADLWSAPHATRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAPPVPPHIATLVEQLETQK*
Ga0137385_107326492	3300012359	Vadose Zone Soil	MSVARTADRIDYWIRRCVHATDFSPADLWSAPHATRRSRANGAPQSKLIPAPDRSVWLSIGQYLRVQYDALAPPVPPHIATLVAQLETQK*
Ga0137375_114442981	3300012360	Vadose Zone Soil	MSVARTADRVDYWIRRCVHATDFSPAELCPAPHATRRSRANGAPQSKLIPAPDRSIGLSIGHYLRVQYDALAPPVPPHIATLVEQLETQK*
Ga0150984_1225683593	3300012469	Avena Fatua Rhizosphere	MSLFRTADRIDYSIRRYIYAGDHLWSPPQAVRRSRANSAAQSKLIPVPDRSVWLSIGHGLRAQYDALSAPVPPHITALVEQVEMK*
Ga0137373_102258653	3300012532	Vadose Zone Soil	MSVARTADRIDYWIRRCVHATDFSPAELCPAPHANRRSRANGAPQGKLIPAPDRSGWLSIGHYLRVQYDALAPPVPPHIAALVEQLQTQK*
Ga0126375_106695511	3300012948	Tropical Forest Soil	MSLFQTADRIDYCVRRYIHATDHLWSPSQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLMVQYDALSAPVPPHITALVEQLEMGK*
Ga0132258_105044804	3300015371	Arabidopsis Rhizosphere	MSLFQTADRIDYSIRRYIHATDHLWSPPLRRSRANGAPQSKLISAPDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLEMRK*
Ga0132258_119047301	3300015371	Arabidopsis Rhizosphere	MSLFGTADRIDYLIRRYMHVTDHRWSPPHAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALA
Ga0132258_130510502	3300015371	Arabidopsis Rhizosphere	MSLFRTADRIDYSIRRYIHAPDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIG
Ga0132256_1037069681	3300015372	Arabidopsis Rhizosphere	MSLLRTADRIDYSIRRYIHATDHLWSPPQAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALSAP
Ga0132257_1012616231	3300015373	Arabidopsis Rhizosphere	RIDYSIRRYIHATDHLWSPPQALRRSGANGAPQSKLISAPDRSVWLSIGHYLRVQYDALSTPLPPHITALVQQLEMKK*
Ga0132255_1002287272	3300015374	Arabidopsis Rhizosphere	MSLFQTADRIDYSIRRYIHATDHLWSPPQALRRSGANGAPQSKLISAPDRSVWLSIGHYLRVQYDALSTPLPPHITALVQQLEMKK*
Ga0132255_1008787482	3300015374	Arabidopsis Rhizosphere	MSLFGTADRIDYLIRRYMHVTDHRWSPPPIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALSAPVPPHITALVEQLERK*
Ga0132255_1038030081	3300015374	Arabidopsis Rhizosphere	MSLFRTADRIDYSIRRYIHATDHLWSPPHAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQ
Ga0182034_109858481	3300016371	Soil	MSVARTADRIDYWIRRCVHATDFSPADLCSVPHATRRSRANGARQSKLIPAPDRSVWLSIGHYLGV
Ga0182040_100574263	3300016387	Soil	MSVSRTADRIDYWIRRCVHATDFSPADLCSVPHATRRSRANGARQSKLIPAPDRSVWLSIGHYLGVQYDALAPPVPPHITALVEQLETQK
Ga0066662_122182331	3300018468	Grasslands Soil	MSVARTADRVDYWIRRCVHATDFSPAELCPAPHANRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAPPVPPHIAALVEQLQTQK
Ga0209814_103601833	3300027873	Populus Rhizosphere	MSLFRTADRLDYSIRRYIHATDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVEQLERK
Ga0209382_113646261	3300027909	Populus Rhizosphere	MSLLRTADRIDYSIRRYIHATDHLWSPPQAIRRSRANRAQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVEQLQTTK
Ga0209382_113819411	3300027909	Populus Rhizosphere	MSLFRTADRIDYSIRRYIHATDHLWSTPHAIRRSRANDAPQSKLIPAPDRSVWLAIGHYLRVQYDVLAAPVPPHITALVQQLETKK
Ga0318516_100743923	3300031543	Soil	MSVARTADRIDYWIRRCVHATDFSPADLCSVPHATRRSRANGARQSKLIPAPDRSVWLSIGHYLGVQYDALAPPVPPHITALVEQLETQK
Ga0318541_100415614	3300031545	Soil	MSVAQTADRIDYWIRRHIHVTDFSPIDLWSTPHAARRSSANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK
Ga0318573_101709462	3300031564	Soil	MSVARTADRIDYWIRRCVHATDFSPADLCSGPHATRRSRANGARQSKLIPAPDRSVWLSIGHYLRIQYDALAPPVPPHIAALVEQLETQKYRPAAMRSDTSVRMSLKFEEQGGVSCMHKSGIGSITIR
Ga0307469_110138482	3300031720	Hardwood Forest Soil	MSLFRTADRIDYSIRRYIHATDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVQQLETKK
Ga0307468_1005563111	3300031740	Hardwood Forest Soil	MSLFRTADRIDYSIRRYIHATDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQ
Ga0307468_1021185732	3300031740	Hardwood Forest Soil	MSLFRTADRIDYSIRRYIHATDHPWSTPHAIRRSRANGAPQRKLIPAPDRSVWLSIGHYLRAQYDALSAPV
Ga0318498_104415311	3300031778	Soil	MSVARTADRIDYWIRRCVHATDFSPADLCSVPHATRRSRANGARQSKLIPAPDRSVWLSIGHYLGVQYDALAPPVPPHI
Ga0318552_107244782	3300031782	Soil	SKGGARMSVAQTADRIDYWIRRHIHVTDFSPIDLSSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK
Ga0307473_103807501	3300031820	Hardwood Forest Soil	MSLFRTADRLDYSIRRYIHATDHLWSTPRAIRRSRANGAPQSKLIPAPDRSVWLSIGHYLRVQYDALAAPVPPHITALVEQLETTK
Ga0318511_105634762	3300031845	Soil	SGAALNSKGGARMSVAQTADRIDYWIRRHIHVTDFSPIDLSSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK
Ga0306925_103597755	3300031890	Soil	VIGLSGAALNSKGGARMSVAQTADRIDYWIRRHIHVTDFSPIDLSSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYD
Ga0306926_107987291	3300031954	Soil	SVIGLSGAALNSKGGRPMSVARTADRIDYWIRRCVHATDFSPADLCSVPHATRRSRANGARQSKLIPAPDRSVWLSIGHYLGVQYDALAPPVPPHITALVEQLETQK
Ga0318562_103692462	3300032008	Soil	MSVAQTADRIDYWIRRHIHVTDFSPIDLSSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK
Ga0318507_103645041	3300032025	Soil	GLSGAALNSKGGARMSVAQTADRIDYWIRRHIHVTDFSPIDLWSTPHAARRSSANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK
Ga0310911_102773573	3300032035	Soil	GLSGAALNSKGGARMSVAQTADRIDYWIRRHIHVTDFSPIDLSSTPHAARRSRANGAPQNTLIPAPDRSAWLSIGHYLRVQYDALAPPVPPHIAALAEQLETQK
Ga0318533_101907472	3300032059	Soil	MSVARTADRIDYWIRRRVHATDFSLADLRSAPHATRRSRANGARQSKLNPAPDRSVWLSIGHYLRVQYDALAPPVPPHIAALVEQLETQKYRPAAKRSDTSVRMSLKFEEQGGVSCMHKSGIGSITIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085910

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences