Metagenome Family F085953

Basic Information
Family ID	F085953
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	81 residues
Representative Sequence	MSKTPIKLTEPERTTIVNALTVAARQYEIDAERASELALHGMTVFEPARDLAKQFQELANDARQLRDKITFLWEHIQL
Number of Associated Samples	83
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.08 %
% of genes near scaffold ends (potentially truncated)	28.83 %
% of genes from short scaffolds (< 2000 bps)	84.68 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Most Common Taxonomy
Group	Unclassified (67.568 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.126 % of family members)
Environment Ontology (ENVO)	Unclassified (26.126 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.676 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.49% β-sheet: 0.00% Coil/Unstructured: 41.51%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
c.49.2.0: automated matches	d5ik2g_	5ik2	0.87977
f.13.1.0: automated matches	d7crja_	7crj	0.87294
f.13.1.0: automated matches	d3ddla_	3ddl	0.86091
a.238.1.2: Arfaptin, Rac-binding fragment	d1i4ta_	1i4t	0.84725
a.25.1.2: Ribonucleotide reductase-like	d6vk6a_	6vk6	0.83864

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01068	DNA_ligase_A_M	7.21
PF07045	DUF1330	1.80
PF02628	COX15-CtaA	1.80
PF00072	Response_reg	0.90
PF00186	DHFR_1	0.90
PF00891	Methyltransf_2	0.90
PF07690	MFS_1	0.90
PF04392	ABC_sub_bind	0.90
PF00408	PGM_PMM_IV	0.90
PF00380	Ribosomal_S9	0.90
PF14279	HNH_5	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	7.21
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	7.21
COG1612	Heme A synthase	Coenzyme transport and metabolism [H]	1.80
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.80
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.90
COG0103	Ribosomal protein S9	Translation, ribosomal structure and biogenesis [J]	0.90
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.90
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.90
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
All Organisms	root	All Organisms	32.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
cellular organisms	root	All Organisms → cellular organisms	32.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.11 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.11 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.70 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	7.21 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.80 %
unclassified Methyloceanibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → unclassified Methyloceanibacter	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.57 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	7.21 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.80 %
Methyloceanibacter sp. wino2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → unclassified Methyloceanibacter → Methyloceanibacter sp. wino2	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573002\|GZIGXIF01C2KHO	Not Available	505	Open in IMG/M
3300003505\|JGIcombinedJ51221_10167795	Not Available	888	Open in IMG/M
3300004152\|Ga0062386_100679191	Not Available	844	Open in IMG/M
3300005332\|Ga0066388_103014080	Not Available	861	Open in IMG/M
3300005602\|Ga0070762_10355153	Not Available	935	Open in IMG/M
3300005764\|Ga0066903_102559758	Not Available	989	Open in IMG/M
3300005764\|Ga0066903_104331872	Not Available	758	Open in IMG/M
3300005842\|Ga0068858_102066850	Not Available	563	Open in IMG/M
3300005921\|Ga0070766_10254877	Not Available	1114	Open in IMG/M
3300006028\|Ga0070717_10648657	Not Available	958	Open in IMG/M
3300006047\|Ga0075024_100130565	Not Available	1129	Open in IMG/M
3300006052\|Ga0075029_100053135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2350	Open in IMG/M
3300006059\|Ga0075017_101264978	Not Available	579	Open in IMG/M
3300006176\|Ga0070765_100160012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2017	Open in IMG/M
3300006176\|Ga0070765_100751065	Not Available	922	Open in IMG/M
3300006176\|Ga0070765_100817443	Not Available	881	Open in IMG/M
3300006176\|Ga0070765_102097470	Not Available	528	Open in IMG/M
3300006904\|Ga0075424_101961470	Not Available	618	Open in IMG/M
3300009156\|Ga0111538_13344116	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300009524\|Ga0116225_1344327	Not Available	664	Open in IMG/M
3300009698\|Ga0116216_10455798	Not Available	774	Open in IMG/M
3300010379\|Ga0136449_101391848	Not Available	1084	Open in IMG/M
3300010379\|Ga0136449_104061939	Not Available	545	Open in IMG/M
3300012078\|Ga0153999_1073815	Not Available	625	Open in IMG/M
3300012177\|Ga0153943_1084545	Not Available	670	Open in IMG/M
3300012180\|Ga0153974_1116208	Not Available	614	Open in IMG/M
3300012958\|Ga0164299_11363286	Not Available	546	Open in IMG/M
3300012960\|Ga0164301_10675743	Not Available	773	Open in IMG/M
3300013105\|Ga0157369_12650134	Not Available	506	Open in IMG/M
3300013308\|Ga0157375_13593535	Not Available	516	Open in IMG/M
3300014325\|Ga0163163_13152402	Not Available	514	Open in IMG/M
3300015372\|Ga0132256_100668374	Not Available	1154	Open in IMG/M
3300016294\|Ga0182041_10269077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1397	Open in IMG/M
3300016319\|Ga0182033_10402253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1158	Open in IMG/M
3300016319\|Ga0182033_10920868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	775	Open in IMG/M
3300016341\|Ga0182035_11887260	Not Available	542	Open in IMG/M
3300016341\|Ga0182035_11946613	Not Available	534	Open in IMG/M
3300016357\|Ga0182032_10541974	Not Available	962	Open in IMG/M
3300016357\|Ga0182032_10677242	Not Available	864	Open in IMG/M
3300016371\|Ga0182034_10680952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	873	Open in IMG/M
3300016387\|Ga0182040_11007543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	695	Open in IMG/M
3300016422\|Ga0182039_10653336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	924	Open in IMG/M
3300016422\|Ga0182039_11502763	Not Available	613	Open in IMG/M
3300016445\|Ga0182038_11342288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	640	Open in IMG/M
3300017946\|Ga0187879_10674291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	575	Open in IMG/M
3300017955\|Ga0187817_10110649	Not Available	1733	Open in IMG/M
3300017955\|Ga0187817_10251420	Not Available	1126	Open in IMG/M
3300017955\|Ga0187817_11045856	Not Available	523	Open in IMG/M
3300017970\|Ga0187783_10039581	All Organisms → cellular organisms → Bacteria → Proteobacteria	3493	Open in IMG/M
3300017973\|Ga0187780_11212607	Not Available	553	Open in IMG/M
3300018006\|Ga0187804_10161159	Not Available	948	Open in IMG/M
3300018044\|Ga0187890_10789966	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300020579\|Ga0210407_10196168	Not Available	1568	Open in IMG/M
3300020580\|Ga0210403_10281916	Not Available	1362	Open in IMG/M
3300020582\|Ga0210395_10018909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5067	Open in IMG/M
3300020582\|Ga0210395_10177924	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300020582\|Ga0210395_10749944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	729	Open in IMG/M
3300020583\|Ga0210401_10732803	Not Available	849	Open in IMG/M
3300021088\|Ga0210404_10405903	Not Available	762	Open in IMG/M
3300021171\|Ga0210405_10446446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1017	Open in IMG/M
3300021180\|Ga0210396_10112213	All Organisms → cellular organisms → Bacteria	2462	Open in IMG/M
3300021180\|Ga0210396_10327953	Not Available	1352	Open in IMG/M
3300021181\|Ga0210388_11710879	Not Available	520	Open in IMG/M
3300021401\|Ga0210393_10067557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2818	Open in IMG/M
3300021401\|Ga0210393_10680007	Not Available	840	Open in IMG/M
3300021404\|Ga0210389_10607696	Not Available	859	Open in IMG/M
3300021405\|Ga0210387_10330780	Not Available	1344	Open in IMG/M
3300021405\|Ga0210387_10574623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1002	Open in IMG/M
3300021406\|Ga0210386_10006891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9089	Open in IMG/M
3300021407\|Ga0210383_10040010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3909	Open in IMG/M
3300021407\|Ga0210383_10063182	All Organisms → cellular organisms → Bacteria	3091	Open in IMG/M
3300021407\|Ga0210383_10201156	Not Available	1704	Open in IMG/M
3300021420\|Ga0210394_10818338	Not Available	813	Open in IMG/M
3300021433\|Ga0210391_10406977	Not Available	1068	Open in IMG/M
3300021474\|Ga0210390_10101612	All Organisms → cellular organisms → Bacteria	2400	Open in IMG/M
3300021474\|Ga0210390_10275216	Not Available	1426	Open in IMG/M
3300021474\|Ga0210390_10287697	Not Available	1392	Open in IMG/M
3300025901\|Ga0207688_10751073	Not Available	618	Open in IMG/M
3300026118\|Ga0207675_100503405	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300027676\|Ga0209333_1180909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	561	Open in IMG/M
3300027889\|Ga0209380_10415946	Not Available	788	Open in IMG/M
3300027915\|Ga0209069_10151021	Not Available	1156	Open in IMG/M
3300028906\|Ga0308309_10802611	Not Available	818	Open in IMG/M
3300031231\|Ga0170824_126744966	Not Available	619	Open in IMG/M
3300031708\|Ga0310686_104903897	All Organisms → cellular organisms → Bacteria → Proteobacteria	868	Open in IMG/M
3300031719\|Ga0306917_11300461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	563	Open in IMG/M
3300031890\|Ga0306925_10607031	Not Available	1155	Open in IMG/M
3300031910\|Ga0306923_10668166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1160	Open in IMG/M
3300031912\|Ga0306921_11517820	Not Available	732	Open in IMG/M
3300031945\|Ga0310913_11234352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	520	Open in IMG/M
3300031954\|Ga0306926_11014765	Not Available	987	Open in IMG/M
3300031954\|Ga0306926_11448661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	795	Open in IMG/M
3300031954\|Ga0306926_11941735	Not Available	664	Open in IMG/M
3300031954\|Ga0306926_12503639	Not Available	566	Open in IMG/M
3300032001\|Ga0306922_10869681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	938	Open in IMG/M
3300032001\|Ga0306922_11187140	Not Available	778	Open in IMG/M
3300032001\|Ga0306922_12224135	Not Available	528	Open in IMG/M
3300032076\|Ga0306924_12458010	Not Available	524	Open in IMG/M
3300032160\|Ga0311301_12429983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	590	Open in IMG/M
3300032261\|Ga0306920_101210675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → unclassified Methyloceanibacter → Methyloceanibacter sp. wino2	1091	Open in IMG/M
3300032261\|Ga0306920_101849155	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300032261\|Ga0306920_103839844	Not Available	549	Open in IMG/M
3300032892\|Ga0335081_10378870	All Organisms → cellular organisms → Bacteria → Proteobacteria	1830	Open in IMG/M
3300033289\|Ga0310914_10606769	Not Available	987	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.19%
Host-Associated	Host-Associated	10.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.28%
Aquatic	Environmental → Aquatic	9.91%
Plants	Host-Associated → Plants	8.11%
Fungi	Host-Associated → Fungi	2.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.28%
Freshwater	Environmental → Aquatic → Freshwater	6.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.50%
Sediment	Environmental → Aquatic → Sediment	3.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.70%
Mycelium	Host-Associated → Fungi → Mycelium	2.70%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.06%
Loam	Environmental → Terrestrial → Soil → Loam	13.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.70%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	2.70%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.71%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.70%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.32%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.31%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.70%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	2.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012078	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC083 MetaG	Host-Associated	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE1_06335140	2189573002	Grass Soil	MTMATIKLTESERTTIVNALTVAARQYEIDAEHASELALHGMTFFEPAKALAEQFRQHATEARQLRDKITFLWEHIQL
JGIcombinedJ51221_101677951	3300003505	Forest Soil	MGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL*
Ga0062386_1006791912	3300004152	Bog Forest Soil	MTMATIKLTESERTTIVNALTVAARQYEIDAEHASELALHGMTFFEPAKALAEQFRQHATEARQLRDKITFLWEHIQL*
Ga0066388_1030140802	3300005332	Tropical Forest Soil	MKTAPIKLTEEERTTIVNALTVAARQYEIDAEHASELALHGMTIFEPARDLAKQFKDLAGDARQLRDKITFLWEHIQL*
Ga0070762_103551532	3300005602	Soil	KGNTHMSKTAMKFTDAERTTLVNALTVATRQYELDAERASELALHGMTVFEPAEALAKQFRQHAIDARELRDKLTFFWDYVQP*
Ga0066903_1025597582	3300005764	Tropical Forest Soil	MSKTPIKLTEPERTTIVNALTVAARQYEIDAERASELALHGMTVFEPARDLAKQFQELANDARQLRDKITFLWEHIQL*
Ga0066903_1043318722	3300005764	Tropical Forest Soil	MKTAPIKLTEEERTTIVNALTVAARQYEIDAEHASELALHGMTIFEPARDLAKQFKDLADDARQLRDKITFLWEHIQL*
Ga0068858_1020668501	3300005842	Switchgrass Rhizosphere	MNTSQIKLTEQERTIIVNALTVAARQYEIDGERASELALHGMTIFEPARDLAKQFQEMATDARQLRDKITFLWESIQL*
Ga0070766_102548773	3300005921	Soil	MSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL*
Ga0070717_106486572	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNMTPLKLTEEERITIVNALTVAARQYEIDGESASELALHGMAVFEPARNLAKQFQDLATDARQLRDKITFLWENIQL*
Ga0075024_1001305651	3300006047	Watersheds	IKLTESERTTIVNALTVAARQYEIDAEHASELALHGMTFFEPAKALAEQFRQHATEARQLRDKITFLWEHIQL*
Ga0075029_1000531354	3300006052	Watersheds	MSKTPIKLTERTTIVNALTLAARQYEIDAVHASELALHGMTIFEPAEALARQLRQYSTDARELRDKITFLWEHVQP*
Ga0075017_1012649781	3300006059	Watersheds	MSKTPTKLTEPERTTIVNALTLAARQYEIDAVHASELALHGMTIFEPAEALARQLRQYSTDARELRDKITFLWEHVQP*
Ga0070765_1001600124	3300006176	Soil	MSKTAMKFTDAERTTLVNALTVATRQYELDAERASELALHGMTVFEPAEALAKQFRQHAIDARELRDKLTFFWDYVQP*
Ga0070765_1007510652	3300006176	Soil	MLISYQPRTRGRHMTTKAFKLTDPERTTIVNALTVAMRQYEKDAEHALELALHGMTIREPAEALAALFRQHATDARQLRDKITFLWEHVQV*
Ga0070765_1008174432	3300006176	Soil	MTMATIKLTESERTTIVNALTVAARQYEIDAEHASELALHGMTFFEPAKALAEQFRQYAAEARQLRDKITFLWEHIQL*
Ga0070765_1020974701	3300006176	Soil	AGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFQPARDLAKQFQELATDARQLRDKITFLWENIQL*
Ga0075424_1019614702	3300006904	Populus Rhizosphere	MSTAHMRLTEQERTTIVNALTVAARQYEIDAERASELALHGMATFEPARNLAKQFQELATDARQLRDKITFLWENIQL*
Ga0111538_133441162	3300009156	Populus Rhizosphere	MRLTEQERTTIVNALTVAARQYEIDAERASELALHGMATFEPARNLAKQFQELATDARQLRDKITFLWENIQL*
Ga0116225_13443271	3300009524	Peatlands Soil	MTMATIKLTESERTTIVNALTVAARQYEIDAEHASELALHGMTFFEPAKALAEQFRQHATEARQLRDKITLLWEHIQL*
Ga0116216_104557982	3300009698	Peatlands Soil	MSKTPIKLTEPERTTIVNALTLAARQYEIDAVHASELALHGMTIFEPAEALARQLRQYSTDARELRDKITFLREHVQP*
Ga0136449_1013918481	3300010379	Peatlands Soil	MSKTPIKLTEPERTTIVNALTLAARQYEIDAVHASELALHGMTIFEPAEALARQLRQYSTDARELRDKI
Ga0136449_1040619391	3300010379	Peatlands Soil	ERTIIVNALTLAGRQYERDAEQASELSLHGMTFFEPAKALAEQFQEHSTEARQLRDKITFLWEHIQL*
Ga0153999_10738151	3300012078	Attine Ant Fungus Gardens	MATKAFKLADPERTTIVNAMTVAMRQYEKDAEHALELALHGMTIREPAEALAALFRQHATDARQLRDKITFLWE
Ga0153943_10845451	3300012177	Attine Ant Fungus Gardens	AEMSKTPIKLTDTERTTIVNALAVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELAADSQQLRDKITFLWEHIQP*
Ga0153974_11162081	3300012180	Attine Ant Fungus Gardens	RHMSKTPIKLTEAERTTIVNALTLAGRQYEIDAERASELALHGMTVFEPAEAIAKQFRQHATDARELRDKLTFLWEHI*
Ga0164303_100893364	3300012957	Soil	VKIPTIRSKRIAATPAAGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL*
Ga0164299_113632862	3300012958	Soil	AGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL*
Ga0164301_106757432	3300012960	Soil	MGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFL
Ga0164302_113550202	3300012961	Soil	CSVKIPTIRSKRIAATPAAGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL*
Ga0164308_106272592	3300012985	Soil	VKIPTIRSKRIAATPAAGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQESATDARQLRDVPVR*
Ga0164304_112538343	3300012986	Soil	VKIPTIRSKRIAATPAAGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWEN
Ga0157369_126501341	3300013105	Corn Rhizosphere	MNTSQIKLTEQERTIIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQAMATDARQLRDKITFLWESIQL*
Ga0157375_135935352	3300013308	Miscanthus Rhizosphere	MNTTPLKLTEEERITIVNALTVAARQYEIDGESASELALHGMAVFEPARNLAKQFQDLATDARQLRDKITFLWENIQ
Ga0163163_131524021	3300014325	Switchgrass Rhizosphere	MNTSQIKLTEQERTIIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQEMATDARQLRDKITFLWESIQL*
Ga0132256_1006683741	3300015372	Arabidopsis Rhizosphere	MNTSQIKLTEQERTIIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQELATDARQLRDKITFLWDSIQL*
Ga0182041_102690773	3300016294	Soil	VRFLTVSYCFSVQRTTNEQNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGMTIFEPAEALAKQFRQYATDARELRDKITFLWQHAQL
Ga0182033_104022531	3300016319	Soil	MDTAPIKLTDEERTTIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQELATDARQLRAKIT
Ga0182033_109208682	3300016319	Soil	MSKNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGMTIFEPAEALAKQFRQYVTDARELRDKITFLWQHAQL
Ga0182035_118872601	3300016341	Soil	GQEPEEEGTMSKTPIKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELAADSQQLRDKITFLWEHIQP
Ga0182035_119466132	3300016341	Soil	MDTAPIKLTDEERTTIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQELATDARQLRDKITFLWKYILP
Ga0182032_105419742	3300016357	Soil	MDTTHIKLTDEERTTIVNTLAVAARQYEIDVERASELALHGMTIFEPARDLAKQFQELATDARQLRDKITFLWKHILP
Ga0182032_106772422	3300016357	Soil	MKTAPIKLTEEERTTIVNALTVAARQYEIDAEHASELALHGMTIFEPARDLAKQFKDLAGDARQLRDKITFLWEHLQL
Ga0182034_106809521	3300016371	Soil	FLTVSYCFSVQRTTNEQNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGITIFEPAEALAKQLRQYATDARELRDKITFLWQHAQL
Ga0182040_110075432	3300016387	Soil	MSKTPMKLTETERTTLVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELATDSQQLRDKITFLWEHIQP
Ga0182039_106533361	3300016422	Soil	MSKNAPIKLTEPERTTIVNALTLAARQYEIDAERASELVLHGMTIFEPAEALAKQFRQYATDARELRDKITFLWQHAQL
Ga0182039_115027631	3300016422	Soil	MSKTPIKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELAADSQQLRDKITFLWEHIQP
Ga0182038_113422882	3300016445	Soil	MSKTPMKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELATDSQQLRDKITFLWEHIQP
Ga0187879_106742912	3300017946	Peatland	MTTSFKLTDPERNVIVNALTLAARQYERDAEEAVELARHGITFFAPAEALAKQFRQEATDARELRDKITFLWEHVQL
Ga0187817_101106491	3300017955	Freshwater Sediment	TEPERTTIVNALTLAARQYEIDAEHASELALHGMTIFEPAEALARQFRQYSTDARELRDKITFLWEHVQP
Ga0187817_102514203	3300017955	Freshwater Sediment	MSTATIKLTESERTTIVNALTVAARQYEIDAEHASELALHGMTFFEPAKALAEQFRQHATEARQLRDKITFLWEHIQL
Ga0187817_110458561	3300017955	Freshwater Sediment	MSKTPIKLTERTTIVNALTLAARQYEIDAVHTSELALHGMTIFEPAEALARQFRQYSADARELRDKITFLWEHVQP
Ga0187783_100395813	3300017970	Tropical Peatland	MSKTPIKLTEAERTTIVNALTLTARQYEIDAERASELALHGMTVFEPAKALAKQFQEQAADARQLRDKITFLWENIQP
Ga0187780_112126071	3300017973	Tropical Peatland	MSKNPIKLTEAERTTIVNALTLAARQYETDAESASELALHGMTIFQPAEELAKQFREHATEARQLRDKITFLWEHIQP
Ga0187804_101611592	3300018006	Freshwater Sediment	MTMATIKLTESERTTIVNALAVAARQYEIDAEHASELALHGMTFFEPAKALAEQFRQHATEARQLRDKITFLWEHIQL
Ga0187890_107899662	3300018044	Peatland	LTDPERNVIVNALTLAARQYERDAEEAVELARHGITFFAPAEALAKQFRQEATDARELRDKITFLWEHVQL
Ga0210407_101961682	3300020579	Soil	MSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0210403_102819163	3300020580	Soil	MGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0210395_100189092	3300020582	Soil	MSKTAMKFTDAERTTLVNALTVATRQYELDAERASELALHGMTVFEPAEALAKQFRQHAIDARELRDKLTFFWDYVQP
Ga0210395_101779241	3300020582	Soil	MLISYQPRTRGRHMTTKAFKLTDPERTTIVNALTVAMRQYEKDAEHALELALHGMTIREPAEALAALFRQHATDARQLRDKITFLWEHVQV
Ga0210395_107499442	3300020582	Soil	MSKTPIKLTETERTTIVNALTVAARQYEIDAERASELAMHGMNVFEPAEKLAKQFRELAADSQQLRDKITFLWEHIQP
Ga0210401_107328031	3300020583	Soil	MSKTPIKLTDTERTTIVNALTVAARQYEIDAERASELAMHGMNVFEPAEKLAKQFRELAADSQQLRDKITFLWEHIQP
Ga0210404_104059031	3300021088	Soil	MTTKAFKLTDPERTTIVNALTVAMRQYEKDAEHALELALHGMTIREPAEALAALFRQHATDARQLRDKITFLWE
Ga0210406_106699633	3300021168	Soil	VKIPTIRSKRIAATPAAGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0210405_104464461	3300021171	Soil	RLLGGRLSRRRMTKMSKTPIKFTDPERTTIVNALTLAARQYETDAEQASELALHGMTVFEPARALANQFRQHAIDARELRDKITFLWEHVQL
Ga0210396_101122132	3300021180	Soil	MSKTPIKFTDPERTTIVNALTLAARQYETDAEQASELALHGMTVFEPARALANQFRQHAIDARELRDKITFLWEHVQL
Ga0210396_103279532	3300021180	Soil	MSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFQPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0210388_117108792	3300021181	Soil	LRRKIAPDRAEEEAEMSKTPIKLTDTERTTIVNALTVAARQYEIDAERASELAMHGMNVFEPAEKLAKQFRELATDSRQLRD
Ga0210393_100675571	3300021401	Soil	AMKFTDAERTTLVNALTVATRQYELDAERASELALHGMTVFEPAEALAKQFRQHAIDARELRDKLTFFWDYVQP
Ga0210393_106800072	3300021401	Soil	MPEEEGTMSKTPIKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELAAVSQQLRDKITFLWEHIQP
Ga0210393_107280891	3300021401	Soil	SKRIAATPAAGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0210389_106076963	3300021404	Soil	MSKTPIKLTETERTIIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0210387_103307803	3300021405	Soil	MHMSKTAMKFTDAERTTLVNALTVATRQYELDAERASELALHGMTVFEPAEALAKQFRQHAIDARELRDKLTFFWDYVQP
Ga0210387_105746232	3300021405	Soil	LELIEPARSRMPEEEGTMSKTPIKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELATDSRQLRDKITFLWEHIQL
Ga0210386_100068918	3300021406	Soil	KTHMSKTAMKFTDAERTTLVNALTVATRQYELDAERASELALHGMTVFEPAEALAKQFRQHAIDARELRDKLTFFWDYVQP
Ga0210383_100400101	3300021407	Soil	MTTKAFKLTDPERTTIVNALTVAMRQYEKDAEHALELALHGMTIREPAEALAALFRQHATDARQLRDKITFLWEHVQV
Ga0210383_100631823	3300021407	Soil	MPEEEGTMSKTPIKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELATDSRQIRDKITFLWEHIQL
Ga0210383_102011563	3300021407	Soil	LRRKIAPDRAEEEAEMSKTPIKLTDTERTTIVNALTVAARQYEIDAERASELAMHGMNVFEPAEKLAKQFRELAADSQQLRDKITFLWEHIQP
Ga0210394_108183381	3300021420	Soil	KAFKLTDPERTTIVNALTVAMRQYEKDAEHALELALHGMTIREPAEALAALFRQHATDARQLRDKITFLWEHVQV
Ga0210391_104069771	3300021433	Soil	MPEEEGTMSKTPIKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELASDSQQLRDKITFLWEHIQP
Ga0210390_101016123	3300021474	Soil	MPEEEGTMSKTPIKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELATDSRQLRDKITFLW
Ga0210390_102752161	3300021474	Soil	MGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFEPARDLAKQFQELASDARQLRDKITFLWENIQL
Ga0210390_102876973	3300021474	Soil	MSKTPIKLTETERTIIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELATDSRQLRDKITFLWEHIQL
Ga0207688_107510731	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MNTTPLKLTEEERITIVNALTVAARQYEIDGESASELALHGMAVFEPARNLAKQFQDLATDARQLRDKITFLWENIQL
Ga0207675_1005034053	3300026118	Switchgrass Rhizosphere	MNMTPLKLTEEERITIVNALTVAARQYEIDGESASELALHGMAVFEPARNLAKQFQDLATDARQLRDKITFLWENIQ
Ga0208859_10432791	3300027069	Forest Soil	VKKPTTRSKRIAATPAAGMGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFQPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0209333_11809091	3300027676	Forest Soil	MTTSFKLTDPERNVIVNALTLAARQYERDAEEAVELARHGINFFAPAEALAKQFRQEATDARELRDKITFLWEHVQL
Ga0209380_104159462	3300027889	Soil	MSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALLGMAIFEPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0209069_101510211	3300027915	Watersheds	KRMTMATIKLTESERTTIVNALTVAARQYEIDAEHASELALHGMTFFEPAKALAEQFRQHATEARQLRDKITFLWEHIQL
Ga0308309_108026112	3300028906	Soil	MGLRDSEEDKMSTTHIKLTEGERTTIVNALTVAARQYEIDAERASELALHGMAIFQPARDLAKQFQELATDARQLRDKITFLWENIQL
Ga0170824_1267449661	3300031231	Forest Soil	MNTRPIKLTEQERTTIVNALTVAARQYEIDAERASELALHGMTTFEPARDLGKQFQELAADARQLRDKITFLWENIQL
Ga0310686_1049038971	3300031708	Soil	MTMKAFRLADPERTTIVNALTVAARQYEKDAEHALELALHAMTIREPAEALAAQFRQHAADARQLRDKITFLWEHIQF
Ga0306917_113004612	3300031719	Soil	LTESYCFSVQRTTNEQNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGMTIFEPAEALAKQFRQYATDARELRDKITFLWQHAQL
Ga0306925_106070312	3300031890	Soil	MKTAPIKLTEEERTTIVNALTVAARQYEIDAEHASELALHGMTIFEPARDLAKQFKDLAGDARQLRDKITFLWEHIQL
Ga0306923_106681662	3300031910	Soil	VRFLTESYCFSVQRTTNEQNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGMTIFEPAEALAKQFRQYVTDARELRDKITFLWQHAQL
Ga0306921_115178201	3300031912	Soil	MKTAPIKLTEEERTTIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQELATDARQLRDKITFLWKHILP
Ga0310913_112343522	3300031945	Soil	ESYCFSVQRTTNEQNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGMTIFEPAEALAKQFRQYATDARELRDKITFLWQHAQL
Ga0306926_110147652	3300031954	Soil	MDTAHIKLTDEERTTIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQELATDARQLRDKITFLWKHILP
Ga0306926_114486612	3300031954	Soil	LTESYCFSVQRTTNEQNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGMTIFEPAEALAKQFRQYVTDARELRDKITFLWQHAQL
Ga0306926_119417351	3300031954	Soil	MSKTPMKLTETERTTIVNALTVAARQYEIDAERASELAMHGMTVFEPAEKLAKQFRELAADSQQLRDKITFLWEHIQP
Ga0306926_125036392	3300031954	Soil	MDTAPIKLTDEERTTIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQELATDARQLRAKITF
Ga0306922_108696811	3300032001	Soil	MSKNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGMTIFEPAEALAKQFRQYATDARELRDKITFLWQHAQL
Ga0306922_111871401	3300032001	Soil	MSKNPIKLTEAERTTIVNALTLAARQYETDAESASELALHGMTIFQPAEALAKQFREHATDARQLRDKITFLWEHLQP
Ga0306922_122241351	3300032001	Soil	ERTTIVNALTLAARQYETDAESASELALHGMTIFQPAEALAKQFREQATEARQLRDKITFLWEHIQP
Ga0306924_124580101	3300032076	Soil	MSKNPIKLTEAERTTIVNALTLAARQYETDAESASELALHGMTIFQPAEALAKQFREQATEARQLRDKITFLWEHIQP
Ga0311301_124299831	3300032160	Peatlands Soil	MTTKSFKLTDSERTIIVNALTLAARQYERDAEQASELALHGMAFFEPAKALAEQFQQQSAEARQLRDK
Ga0306920_1012106752	3300032261	Soil	LTESYCFSVQRTTNEQNAPIKLTEPERTTIVNALTLAARQYEIDAERASELALHGMTIFEPAEALAKQLRQYATDARELRDKITFLWQHAQL
Ga0306920_1018491552	3300032261	Soil	MDTTHIKLTDEERTTIVNALTVAARQYEIDAERASELALHGMTIFEPARDLAKQFQELATDARQLRDKITFLWKHILP
Ga0306920_1038398442	3300032261	Soil	MSKTPIKLTEAERTTIVNALTLAARQYEIDAEHASELALHGMTVFEPAEALAKQFKQYATDARQLRDKITFLWEHIQL
Ga0335081_103788703	3300032892	Soil	MTTKAFRLTDAERTTIVNALTVAARQYERDVEQALELALHGMTIREPAEALAAQLRQHAVDARQLRDKITFLWEHIQ
Ga0310914_106067691	3300033289	Soil	MSKNPIKLTEAERTTIVLAAQTDAESASELALHGMTIFQPAEALAKQFREQATEARQLRDKITFLWEHIQP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085953

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign