Metagenome / Metatranscriptome Family F086005

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086005
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	46 residues
Representative Sequence	MSLVLQSLLPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLD
Number of Associated Samples	93
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.78 %
% of genes near scaffold ends (potentially truncated)	92.79 %
% of genes from short scaffolds (< 2000 bps)	90.99 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.081 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.117 % of family members)
Environment Ontology (ENVO)	Unclassified (27.027 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.054 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.40% β-sheet: 0.00% Coil/Unstructured: 72.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF04392	ABC_sub_bind	34.23
PF01548	DEDD_Tnp_IS110	2.70
PF00106	adh_short	1.80
PF02371	Transposase_20	1.80
PF00149	Metallophos	0.90
PF06627	DUF1153	0.90
PF08281	Sigma70_r4_2	0.90
PF00052	Laminin_B	0.90
PF00027	cNMP_binding	0.90
PF07751	Abi_2	0.90
PF13430	DUF4112	0.90
PF02826	2-Hacid_dh_C	0.90
PF00378	ECH_1	0.90
PF02517	Rce1-like	0.90
PF13763	DUF4167	0.90
PF13683	rve_3	0.90
PF02518	HATPase_c	0.90
PF08241	Methyltransf_11	0.90
PF07883	Cupin_2	0.90
PF12697	Abhydrolase_6	0.90
PF03928	HbpS-like	0.90
PF03466	LysR_substrate	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	34.23
COG3547	Transposase	Mobilome: prophages, transposons [X]	4.50
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.90
COG4823	Abortive infection bacteriophage resistance protein	Defense mechanisms [V]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.08 %
Unclassified	root	N/A	18.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.08 %
Unclassified	root	N/A	18.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.08 %
Unclassified	root	N/A	18.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	59.46 %
Unclassified	root	N/A	18.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.15 %
Unclassified	root	N/A	18.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.02 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.41 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.90 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.11 %
unclassified Rhodobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales	0.90 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.90 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.41 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	2.70 %
Rhodobacterales bacterium 52_120_T64	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium 52_120_T64	0.90 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.90 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.41 %
Nitrobacter hamburgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	2.70 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.90 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.90 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.90 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.90 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.90 %
Rhodobacterales bacterium 52_120_T64	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium 52_120_T64	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.41 %
Nitrobacter hamburgensis X14	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	2.70 %
Methylobacterium sp. 2A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 2A	0.90 %
Bradyrhizobium sp. CCGB12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	0.90 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.90 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.90 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.90 %
Rhodobacterales bacterium 52_120_T64	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium 52_120_T64	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320005\|FACEOR_FY84VJD01BOP5M	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
2166559005\|cont_contig24801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1149	Open in IMG/M
2166559005\|cont_contig51371	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
2170459003\|FZ032L002JVS4K	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
2170459010\|GIO7OMY01C6KTY	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
2209111022\|2221204146	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300000912\|JGI12032J12867_1006104	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300004633\|Ga0066395_10175230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1105	Open in IMG/M
3300004635\|Ga0062388_100520488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1070	Open in IMG/M
3300005163\|Ga0066823_10011379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1264	Open in IMG/M
3300005468\|Ga0070707_102064387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300005471\|Ga0070698_101025860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	772	Open in IMG/M
3300005559\|Ga0066700_10074535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2162	Open in IMG/M
3300005559\|Ga0066700_10155169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1554	Open in IMG/M
3300005610\|Ga0070763_10694227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300005713\|Ga0066905_101880649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	553	Open in IMG/M
3300005843\|Ga0068860_100396121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1365	Open in IMG/M
3300006028\|Ga0070717_10066628	All Organisms → cellular organisms → Bacteria → Proteobacteria	2995	Open in IMG/M
3300006028\|Ga0070717_10849988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	830	Open in IMG/M
3300006175\|Ga0070712_100173811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1673	Open in IMG/M
3300006605\|Ga0074057_10028006	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300006606\|Ga0074062_10049823	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300007258\|Ga0099793_10299435	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300009143\|Ga0099792_11144235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300009148\|Ga0105243_10626490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1039	Open in IMG/M
3300009792\|Ga0126374_11688408	Not Available	526	Open in IMG/M
3300010037\|Ga0126304_10278126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1105	Open in IMG/M
3300010041\|Ga0126312_10463891	Not Available	904	Open in IMG/M
3300010043\|Ga0126380_11007586	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300010046\|Ga0126384_10988160	Not Available	765	Open in IMG/M
3300010154\|Ga0127503_10075055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300010333\|Ga0134080_10539545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300010360\|Ga0126372_10794837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium 52_120_T64	936	Open in IMG/M
3300010362\|Ga0126377_13208304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	528	Open in IMG/M
3300010398\|Ga0126383_10174335	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300010398\|Ga0126383_10308033	Not Available	1585	Open in IMG/M
3300010398\|Ga0126383_12625432	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300010398\|Ga0126383_13532817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300010868\|Ga0124844_1231492	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300010999\|Ga0138505_100008297	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300012148\|Ga0153940_1071231	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012209\|Ga0137379_10145248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2279	Open in IMG/M
3300012210\|Ga0137378_10102338	All Organisms → cellular organisms → Bacteria	2631	Open in IMG/M
3300012350\|Ga0137372_11142998	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300012508\|Ga0157315_1050896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300012677\|Ga0153928_1102761	Not Available	550	Open in IMG/M
3300012938\|Ga0162651_100077022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300012938\|Ga0162651_100094922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300012939\|Ga0162650_100011501	All Organisms → cellular organisms → Bacteria → Proteobacteria	1159	Open in IMG/M
3300012939\|Ga0162650_100050411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300012985\|Ga0164308_10731112	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300012986\|Ga0164304_10916318	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300012989\|Ga0164305_11995776	Not Available	529	Open in IMG/M
3300014154\|Ga0134075_10490090	Not Available	550	Open in IMG/M
3300015359\|Ga0134085_10628550	Not Available	501	Open in IMG/M
3300016270\|Ga0182036_10182640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1522	Open in IMG/M
3300016270\|Ga0182036_10863223	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300016294\|Ga0182041_10509970	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300016357\|Ga0182032_10195787	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300018028\|Ga0184608_10235203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 2A	805	Open in IMG/M
3300018028\|Ga0184608_10466022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	543	Open in IMG/M
3300018031\|Ga0184634_10086178	Not Available	1356	Open in IMG/M
3300018067\|Ga0184611_1208155	Not Available	695	Open in IMG/M
3300018469\|Ga0190270_10983921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	868	Open in IMG/M
3300018469\|Ga0190270_11572427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300018481\|Ga0190271_10469355	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300021078\|Ga0210381_10082893	Not Available	1017	Open in IMG/M
3300021170\|Ga0210400_10390156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1148	Open in IMG/M
3300021178\|Ga0210408_10194613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1612	Open in IMG/M
3300021445\|Ga0182009_10728436	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300025910\|Ga0207684_11604052	Not Available	527	Open in IMG/M
3300026551\|Ga0209648_10283839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1199	Open in IMG/M
3300027288\|Ga0208525_1044521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300027855\|Ga0209693_10406608	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300027903\|Ga0209488_10324906	Not Available	1146	Open in IMG/M
3300027903\|Ga0209488_10339153	Not Available	1118	Open in IMG/M
3300028708\|Ga0307295_10065698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M
3300028711\|Ga0307293_10114697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	856	Open in IMG/M
3300028715\|Ga0307313_10073221	Not Available	1024	Open in IMG/M
3300028718\|Ga0307307_10093166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	913	Open in IMG/M
3300028811\|Ga0307292_10523605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300028819\|Ga0307296_10006208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	6276	Open in IMG/M
3300028828\|Ga0307312_11034700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300028880\|Ga0307300_10083376	Not Available	946	Open in IMG/M
3300028884\|Ga0307308_10160009	Not Available	1078	Open in IMG/M
3300031561\|Ga0318528_10394036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	743	Open in IMG/M
3300031564\|Ga0318573_10466325	Not Available	679	Open in IMG/M
3300031564\|Ga0318573_10582502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300031573\|Ga0310915_10293096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1149	Open in IMG/M
3300031744\|Ga0306918_11405723	Not Available	535	Open in IMG/M
3300031770\|Ga0318521_10047848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2193	Open in IMG/M
3300031771\|Ga0318546_10310755	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300031794\|Ga0318503_10101101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	915	Open in IMG/M
3300031832\|Ga0318499_10254667	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300031890\|Ga0306925_10117747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2840	Open in IMG/M
3300031890\|Ga0306925_12040721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300031894\|Ga0318522_10198512	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300031946\|Ga0310910_10060993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2691	Open in IMG/M
3300031946\|Ga0310910_10327970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1207	Open in IMG/M
3300031954\|Ga0306926_12562607	Not Available	557	Open in IMG/M
3300032001\|Ga0306922_10585553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1183	Open in IMG/M
3300032001\|Ga0306922_12078555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300032008\|Ga0318562_10475507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	725	Open in IMG/M
3300032052\|Ga0318506_10120450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	1134	Open in IMG/M
3300032060\|Ga0318505_10610834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300032076\|Ga0306924_11350220	All Organisms → cellular organisms → Bacteria → Proteobacteria	763	Open in IMG/M
3300032076\|Ga0306924_11695486	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300032261\|Ga0306920_100231535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2756	Open in IMG/M
3300033289\|Ga0310914_10500302	Not Available	1099	Open in IMG/M
3300033289\|Ga0310914_11651509	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300033290\|Ga0318519_10122552	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.69%
Host-Associated	Host-Associated	4.50%
Engineered	Engineered	1.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.39%
Aquatic	Environmental → Aquatic	6.31%
Plants	Host-Associated → Plants	2.70%
Fungi	Host-Associated → Fungi	1.80%
Modeled	Engineered → Modeled	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.88%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	4.50%
Sediment	Environmental → Aquatic → Sediment	3.60%
Freshwater	Environmental → Aquatic → Freshwater	2.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.80%
Mycelium	Host-Associated → Fungi → Mycelium	1.80%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.07%
Loam	Environmental → Terrestrial → Soil → Loam	10.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.80%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.80%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.50%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.80%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.80%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.41%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	4.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.70%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.80%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.80%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320005	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000912	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012148	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ024 MetaG	Host-Associated	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012677	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG	Host-Associated	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORA_469010	2032320005	Soil	VSLELRSLLPYPNSCPGTSPHQQERDTKMAMLSFGGIDV
cont_0801.00002050	2166559005	Simulated	MSLVLQSLLPYPYSCQGTSPHQQGWDTKMAMLSFCGIDVSKDRLDVVVLPEGGSFR
cont_0371.00003630	2166559005	Simulated	MSLVLQSLLPYPNSCQGTSPHQQGWDTKMEKLSYGGIDVSKDRLDVVVLPEGGSFR
E4A_02769890	2170459003	Grass Soil	MSLVLQSFLPYPDSCLGTSPHQQGWDTKMAELSFGGIDVSKDRLDVLLLPEGLCFSVLQRRAWFG
F62_01428090	2170459010	Grass Soil	MSLVLQSILPYPDSCLGTSPHQQGWDTKMEKLSYG
2222033964	2209111022	Grass Soil	MSLVLQSLLPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLDVVVLPEGGSFR
JGI12032J12867_10061041	3300000912	Forest Soil	PSILPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVSRLGS*
Ga0066395_101752302	3300004633	Tropical Forest Soil	MSLVLQSPLPYPHSCQGTSPHQQGWDTKMAMLSFCGIDVSKDRLDVVVLPEG
Ga0062388_1005204882	3300004635	Bog Forest Soil	MSLVLQSLLPYPNGCQGTSPHQQGRDTKMAELSHGGIDVSKDRLDVMILH*
Ga0066823_100113791	3300005163	Soil	MSLVLQSILPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVS
Ga0070707_1020643871	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSLALQSLLPYPNSCEGASPHQQGRDTKMLSFCGIDVSKDRLDVM
Ga0070698_1010258602	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVLQSLLPYPNSCQGTSPHQQGWDTKMAMLSFCGIDVSKDRLDVVVLPE
Ga0066700_100745351	3300005559	Soil	MSLVLRSLLPYPHSCQGTSPHQQGWDMKMAMLSFCGIDVSKDRLD
Ga0066700_101551691	3300005559	Soil	MSLVLQSLLPYPHSCQGTSPHQQGWDMKMAMLSFCGIDVSKDRLD
Ga0070763_106942272	3300005610	Soil	MSLALQSLLPYPNSCEGASPHQQGRDTKMLSFCGIDVSKDRLDVMVLPDEYSSSA*
Ga0066905_1018806492	3300005713	Tropical Forest Soil	MSLVLRSLLPYPNSCQGTSPHQQGWDTKMAMLSFCGIDISKDRLDVVVLPEG
Ga0068860_1003961211	3300005843	Switchgrass Rhizosphere	MSLVLQSILPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKD
Ga0070717_100666281	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVLQSLLPYPNSCQGTSPHQQGWDTKMEKLSYGGI
Ga0070717_108499882	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVLQPLLPFPDSCQGMSPHQQGRGTKMTEHCYGGIDVSKDRLDVMVLPDRKSFSVDNN
Ga0070712_1001738113	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVLQSLLPYPNRCQGTSPHQQGWDTKMEKLSYGGIDVSKTDWTW*
Ga0074057_100280062	3300006605	Soil	MSLVLQPLLPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKD
Ga0074062_100498231	3300006606	Soil	MSLVLQSILPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVSKD
Ga0099793_102994352	3300007258	Vadose Zone Soil	MSLELRSLLPYPNSCRGTNPHQQERDTKMAMLSFGGIDVSKDRLDVVVLPEEECSSVPN
Ga0099792_111442351	3300009143	Vadose Zone Soil	MSLVLPSIPPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLDVV
Ga0105243_106264902	3300009148	Miscanthus Rhizosphere	MSLVLQSLLPYPHSCQGTSPHQQGWDTKMAMLSFCGIDVSKDRL
Ga0126374_116884082	3300009792	Tropical Forest Soil	MSLALQSLLPYPNSCEGASPHQQGRDTKMLSFCGIDVSKDR
Ga0126304_102781261	3300010037	Serpentine Soil	MSLVLQPFLPFPHSCQGSSPHQRGRDERMIEQCFGGIDVSQDRLDVLL
Ga0126312_104638913	3300010041	Serpentine Soil	MSLELRSLLPYPNSCLGTSPHQQGRDTKMAEHCYGGIDVSKDRLDVM
Ga0126380_110075861	3300010043	Tropical Forest Soil	MSLVLQSLLPYPNSCQGTSPHQQGWDTKMAMLSFCGVDVSKDRLDV
Ga0126384_109881602	3300010046	Tropical Forest Soil	MSLVLQSFLPYPDSCLGTSPHQQGWDTKMAELSFGGIDVSK
Ga0127503_100750552	3300010154	Soil	MSLVLQSILPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLDVVVLP*
Ga0134080_105395451	3300010333	Grasslands Soil	MSLELQSLLPYPNSCLGASPHQQGRDTKMEMLSFGGIDVSKDRL
Ga0126372_107948372	3300010360	Tropical Forest Soil	MSLELRSLLPYPNSCLGASPHQQTWGTKMAVLSFCGIDVSKDRLDVVI
Ga0126377_132083042	3300010362	Tropical Forest Soil	MSLVLQSILPYPDSCLGTSPHQQGWDTKMAELSFGGIDVSKDR
Ga0126383_101743351	3300010398	Tropical Forest Soil	VSLELQSLLPYPNSCEGASPHQQGRDTKMLSFCGIDVSKDRLDV
Ga0126383_103080331	3300010398	Tropical Forest Soil	MSLVLQSFLAYPDSCLGTSPHQQGWDTKMAELSFGGIDVSKDRLDVLVLP
Ga0126383_126254321	3300010398	Tropical Forest Soil	MSLVLRSLLQCPNSCQGTSPHQQGWDTKMAMLSFCGVDVSKDRLDV
Ga0126383_135328172	3300010398	Tropical Forest Soil	MSLELQSLLPYPNSCLGTGPHQQGRDTKMLSFCGIDVSKDRLDVMVL
Ga0124844_12314922	3300010868	Tropical Forest Soil	MSLVLQSLLPYPNSCQGTSPHQQGWDTKMAMLSFCGIDVSKDRLDVVVLPEGWFFFGE*
Ga0138505_1000082971	3300010999	Soil	MSLVLQSLLPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLDV
Ga0153940_10712311	3300012148	Attine Ant Fungus Gardens	MSLVLQSLLPFPNSCQGTSPHQQGRGTKMTEHYYCGIDVAKDRLDVMVLPDHKSFSVD
Ga0137379_101452481	3300012209	Vadose Zone Soil	MSLVLQPFLPYPNSCLGTSPHQQERDTKMAQRSFCGIDVAKDRLDVM
Ga0137378_101023384	3300012210	Vadose Zone Soil	MSLALQSLLPYPNSCEGASPHQQGRDTKMLSFCGIDVSKDRLDVMVLPDEYSSSVPND
Ga0137372_111429981	3300012350	Vadose Zone Soil	MSLELWSLLPYPDSCPGTSPHQQERDTKMAMLSFGGIDV
Ga0157315_10508961	3300012508	Arabidopsis Rhizosphere	MSLVLQSLLPYPPSCLGTSPHQQGWDTKMEKLSYGGIDV
Ga0153928_11027611	3300012677	Attine Ant Fungus Gardens	MSLVLQSLLPFPDSCQGMSPHQQGRGTKMTEHCYGGIDVSKDR
Ga0162651_1000770222	3300012938	Soil	MSLVLQSILPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKDR
Ga0162651_1000949222	3300012938	Soil	MSLVLQSLLPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKDR
Ga0162650_1000115011	3300012939	Soil	MSLMLQSLLPYPNSCQGTSPHQQGWDTKMEKLSYGG
Ga0162650_1000504111	3300012939	Soil	MSLVLPSILPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLD
Ga0164308_107311121	3300012985	Soil	LVLPSILPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVSKD
Ga0164304_109163183	3300012986	Soil	MSLVLQSILPYPYSCLGTSPHQQGWDTKMEKLSYGGIDVSK
Ga0164305_119957762	3300012989	Soil	MSMELQSLLPYPNSCLGASPHQQGRDTKMAMLSFGGIDVSKDRLDI
Ga0134075_104900901	3300014154	Grasslands Soil	MSLELQSLLPYPNSCLGASPHQQGRDTKMAMLSFGGIDVSK
Ga0134085_106285501	3300015359	Grasslands Soil	MSLVLQSLLPYPHSCQGTSPHQQGWDTKMAMLSFCGIDVSKDRLDVV
Ga0182036_101826403	3300016270	Soil	MSLVLQPLLPFPDGCQGMSPHQQGRGTKMTEHCYGGIDVSKDRLDVMVLPDRK
Ga0182036_108632231	3300016270	Soil	MSLVLQSLLPFPDSCQGMSPHQQGRGTKMTEHCYGGID
Ga0182041_105099702	3300016294	Soil	MSLVLQSILPYPDSCLGTSPHQQGWDTKMAELSFGGIDVSKDRLDVLL
Ga0182032_101957871	3300016357	Soil	MSLVLQPFLPYPNSCQGTSPHQQGWDTKMAELSFGGIDVSK
Ga0184608_102352032	3300018028	Groundwater Sediment	MSLVLQSILPYPHSCQGTSPHQQGWDTKMEKLSYGGIDVSKDR
Ga0184608_104660222	3300018028	Groundwater Sediment	MSLVLQSLLPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSK
Ga0184634_100861781	3300018031	Groundwater Sediment	MSLVLQSILPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLDVVVL
Ga0184611_12081551	3300018067	Groundwater Sediment	VLQSLLPYPNSCRGTSPHQQGWDTKMEKLSYGGIDVSKDRLDVV
Ga0190270_109839211	3300018469	Soil	MSLVLQSILPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLD
Ga0190270_115724271	3300018469	Soil	MSLVLQSLLPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLD
Ga0190271_104693551	3300018481	Soil	MSQVLRSFLPFPDTCQGTSPHQQGRGTKMVERFSGIDA
Ga0210381_100828931	3300021078	Groundwater Sediment	MSLVLQSILLYPDSCLRTSPHQQGWDTKMEKLSYGGIDVSKDRLDVVVLPE
Ga0210400_103901562	3300021170	Soil	MSLVLQSILPYPYSCLGTSPHQQGWDPKMEKLSYGGIDVSKDRLDV
Ga0210408_101946131	3300021178	Soil	MSLVLQSILPYPDSCLGTSPHQQGWDTKMEKLSYGGID
Ga0182009_107284361	3300021445	Soil	VNRPRVSLVLQSLLPFPDSCQGTSPHQQGRDPKMIEHCYGGIDVSQERLD
Ga0207684_116040522	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSLELRSLLPYPDSCLGTSPHQQGRVTKMLSFCAIDDIVWAD
Ga0209648_102838391	3300026551	Grasslands Soil	MSLELQSLLPCPNSCLGASPHQQERDTKMAKLSFGGIDVSKDRL
Ga0208525_10445211	3300027288	Soil	MSLVLQSILPYPHSCLGTSPHQQGWDTKMEKLSYGGIDVS
Ga0209693_104066082	3300027855	Soil	MSLALQSLLPYPNSCEGASPHQQGRDTKMLSFCGIDVSKDRLDVMVLPDEYSSSA
Ga0209488_103249061	3300027903	Vadose Zone Soil	MSLVLPSIPPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVSKDRLD
Ga0209488_103391531	3300027903	Vadose Zone Soil	MSLALQSFLPYPNSCLGTSPHQQGRDTKMAMLSFC
Ga0307295_100656982	3300028708	Soil	MSLVLQSLLPYPHSCLGTSPHQQGWDTKKMEKLSYGGIDVSKGRLDVVVL
Ga0307293_101146972	3300028711	Soil	MSLVLQSLLPYPHSCLGTSPHQQGWDTKKMEKLSYGGIDVSKDRL
Ga0307313_100732211	3300028715	Soil	MSLVLQSILLYPDSCLRTSPHQQGWDTKMEKLSYGGIDVSKDRLDV
Ga0307307_100931661	3300028718	Soil	MSLVLQSLLPYPHSCLGTSPHQQGWDTKKMEKLSYGGIDVSKDRLDVV
Ga0307292_105236052	3300028811	Soil	MSLVLQSLLPYPHSCLGASPHQQGWDTKMEKLSYGGIDVSKDRLDV
Ga0307296_100062081	3300028819	Soil	MSLVLRSLRPYPHSCQGTSPYQQGWDTKMAILSFCGIDVSKDRLD
Ga0307312_110347001	3300028828	Soil	MSLVLQSLLPYPHSCLGTSPHQQGWDTKMENLSYGGIDVSK
Ga0307300_100833761	3300028880	Soil	MSLVLQSILLYPDSCLRTSPHQQGWDTKMEKLSYGGIDVSKDRLDVVVLPEVVNECQA
Ga0307308_101600091	3300028884	Soil	MSLVLQSILPYPDSCLRTSPHQQGWDTKMEKLSYGGIDVSKDRLDVVV
Ga0318528_103940362	3300031561	Soil	MSLVLQSLLPYPNSCQGTSPHQQGWNTKMAMLSFCGVDVSKDRLDVVVLPEGWFFSVSND
Ga0318573_104663251	3300031564	Soil	MSLVLRSLLPYPNSCQGTSPHQQGWDTKMAMLSFC
Ga0318573_105825021	3300031564	Soil	MSLVLQSLLPFPDSCQGMSPHQQGRGTKMTEHCYGGIDVSKDRLDVMV
Ga0310915_102930962	3300031573	Soil	MSLVLQSLLPFPDSCQGTSPHQQGRGTKMTEHCYGGIDVSKDRLDVMVLP
Ga0306918_114057231	3300031744	Soil	MSLELRSLLPYPNSCLGTSPHQQERDTKMAMLSFGGIDVSKERLDVMILPEEQCSSVSND
Ga0318521_100478481	3300031770	Soil	MSLVLQSLLPDPHSCQGTSPHQQGWDTKMAMLSFCGIDVSKDRLDVV
Ga0318546_103107552	3300031771	Soil	MSLALQSLLPYPNSCLGASPHQQGSDTKMAMLSFGGIDVSKDRLDVVVLPEG
Ga0318503_101011012	3300031794	Soil	MSLVLQSLLPYPNSCQGTSPHQQGWNTKMAMLSFCGVDVSKDRLD
Ga0318499_102546671	3300031832	Soil	MSLVLQSLLPYPYSCQGTSPHQQGWDTKMAMLSFCGVDVSKD
Ga0306925_101177477	3300031890	Soil	MSLALQSLLPYPNSCEGASPHQQGRDTKMLSFCGIDVSKDRLDVMV
Ga0306925_120407211	3300031890	Soil	MSLVLQPLLPFPDSCQGMSPHQQGRGTKMTEHCYGGIDVS
Ga0318522_101985122	3300031894	Soil	MSLVLRSLLPYPNSCLGTSPHQQGWDTKMAMLSFCGIDVSKDRLD
Ga0310910_100609934	3300031946	Soil	MSLVLQSLLPYPHSCQGTSPHQQGWDTKMAMLSFCGIDVSKD
Ga0310910_103279701	3300031946	Soil	MSLALQSLLPYPHSCQGTSPHQQGWDTKMAMLSFCGVDVSKDRLD
Ga0306926_125626071	3300031954	Soil	MSLVLQSLLPYPNSCQGTSPHQQGWDTKMAMLSFCGIDVSKDRLDVVV
Ga0306922_105855531	3300032001	Soil	MSLVLQSLLYPNSCQGTSPHQQGWDTKMAMLSFCGIDVSKDR
Ga0306922_120785551	3300032001	Soil	MSLELRSLLPYPNSCLGTSPHQQGRDTKMAMLSFCGVDVSKD
Ga0318562_104755071	3300032008	Soil	MSLVLPSLLPFPNSCQGMNPHQQGRGTKMIQQGYGGIDVS
Ga0318506_101204501	3300032052	Soil	MSLVLQSLLPYPNSCQGTSPHQQGWNTKMAMLSFCGVDVSKDRLDVVVLPEGWFFSVS
Ga0318505_106108341	3300032060	Soil	MSLALQSLLPYPNSCLGASPYQQGRDTKMLSFCGIDVSKDRLD
Ga0306924_113502201	3300032076	Soil	MSLVLQSLLPCPNSCQGTSPHQQGWDTKMAMLSFCGIDVSKDR
Ga0306924_116954862	3300032076	Soil	MSLVLQPLLPFPDSCQGMSPHKQGRGTKMTEHCYGGIDVSKDRLDVMVLPDRKSFSV
Ga0306920_1002315356	3300032261	Soil	VSLELRSLLLYPDSCLGASPHQQGRDTKMLSFCGIDVSKDRLDVIVL
Ga0310914_105003022	3300033289	Soil	MSLVLQSLLPYPHSCQGTSPHQQGWDTKMAMLSFCGVDVS
Ga0310914_116515091	3300033289	Soil	MSLVLQPLLPFPDSCQGMSPHKQGRGTKMTEHCYGGIDVSK
Ga0318519_101225521	3300033290	Soil	MSLVLQPLLPFPDSCQGMSPHQQGRGTKMTEHCYGGIDVSKDRLDVMV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086005

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences