Metagenome Family F086013

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086013
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	39 residues
Representative Sequence	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTIK
Number of Associated Samples	73
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.45 %
% of genes near scaffold ends (potentially truncated)	98.20 %
% of genes from short scaffolds (< 2000 bps)	92.79 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (88.288 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.739 % of family members)
Environment Ontology (ENVO)	Unclassified (64.865 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.459 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.27% β-sheet: 0.00% Coil/Unstructured: 72.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13560	HTH_31	4.50
PF02796	HTH_7	1.80
PF13403	Hint_2	1.80
PF13481	AAA_25	0.90
PF09339	HTH_IclR	0.90
PF16363	GDP_Man_Dehyd	0.90
PF00196	GerE	0.90
PF13817	DDE_Tnp_IS66_C	0.90
PF00226	DnaJ	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
All Organisms	root	All Organisms	11.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
cellular organisms	root	All Organisms → cellular organisms	11.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	11.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.11 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.11 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.29 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10037920	Not Available	1110	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1022176	Not Available	892	Open in IMG/M
3300000956\|JGI10216J12902_120886211	Not Available	611	Open in IMG/M
3300005332\|Ga0066388_100501897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1849	Open in IMG/M
3300005332\|Ga0066388_105729669	Not Available	628	Open in IMG/M
3300005764\|Ga0066903_100466762	Not Available	2119	Open in IMG/M
3300005764\|Ga0066903_101185688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1416	Open in IMG/M
3300005764\|Ga0066903_101939342	Not Available	1129	Open in IMG/M
3300005764\|Ga0066903_102477335	Not Available	1004	Open in IMG/M
3300005764\|Ga0066903_103387751	Not Available	860	Open in IMG/M
3300005764\|Ga0066903_103729584	Not Available	819	Open in IMG/M
3300005764\|Ga0066903_104256895	Not Available	765	Open in IMG/M
3300005764\|Ga0066903_104491387	Not Available	744	Open in IMG/M
3300005764\|Ga0066903_105448333	Not Available	671	Open in IMG/M
3300006175\|Ga0070712_100036550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3343	Open in IMG/M
3300006800\|Ga0066660_11538679	Not Available	525	Open in IMG/M
3300009792\|Ga0126374_10287859	Not Available	1094	Open in IMG/M
3300010046\|Ga0126384_11836115	Not Available	576	Open in IMG/M
3300010046\|Ga0126384_11884536	Not Available	569	Open in IMG/M
3300010047\|Ga0126382_10830980	Not Available	791	Open in IMG/M
3300010048\|Ga0126373_12679371	Not Available	556	Open in IMG/M
3300010360\|Ga0126372_11463221	Not Available	718	Open in IMG/M
3300010360\|Ga0126372_12244390	Not Available	595	Open in IMG/M
3300010361\|Ga0126378_11285656	Not Available	827	Open in IMG/M
3300010361\|Ga0126378_12035333	Not Available	655	Open in IMG/M
3300010361\|Ga0126378_12114914	Not Available	642	Open in IMG/M
3300010366\|Ga0126379_10508175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1278	Open in IMG/M
3300010398\|Ga0126383_12203871	Not Available	637	Open in IMG/M
3300012971\|Ga0126369_11211458	Not Available	845	Open in IMG/M
3300012971\|Ga0126369_12279096	Not Available	628	Open in IMG/M
3300012971\|Ga0126369_12291929	Not Available	627	Open in IMG/M
3300016270\|Ga0182036_10599069	Not Available	883	Open in IMG/M
3300016270\|Ga0182036_10932621	Not Available	713	Open in IMG/M
3300016294\|Ga0182041_11196511	Not Available	693	Open in IMG/M
3300016319\|Ga0182033_10666401	Not Available	909	Open in IMG/M
3300016319\|Ga0182033_11768493	Not Available	561	Open in IMG/M
3300016319\|Ga0182033_11822513	Not Available	552	Open in IMG/M
3300016341\|Ga0182035_11889082	Not Available	541	Open in IMG/M
3300016341\|Ga0182035_11991515	Not Available	528	Open in IMG/M
3300016387\|Ga0182040_10156847	All Organisms → cellular organisms → Bacteria	1629	Open in IMG/M
3300016404\|Ga0182037_10985135	Not Available	734	Open in IMG/M
3300016422\|Ga0182039_10061754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2605	Open in IMG/M
3300016422\|Ga0182039_10759442	Not Available	858	Open in IMG/M
3300016445\|Ga0182038_11284694	Not Available	654	Open in IMG/M
3300018482\|Ga0066669_11270498	Not Available	665	Open in IMG/M
3300020580\|Ga0210403_10947338	Not Available	676	Open in IMG/M
3300021178\|Ga0210408_10410759	Not Available	1078	Open in IMG/M
3300021405\|Ga0210387_10814801	Not Available	824	Open in IMG/M
3300024288\|Ga0179589_10063326	Not Available	1429	Open in IMG/M
3300025905\|Ga0207685_10442525	Not Available	674	Open in IMG/M
3300025906\|Ga0207699_10334473	Not Available	1065	Open in IMG/M
3300025929\|Ga0207664_10623580	Not Available	969	Open in IMG/M
3300031545\|Ga0318541_10615892	Not Available	607	Open in IMG/M
3300031546\|Ga0318538_10126039	Not Available	1340	Open in IMG/M
3300031561\|Ga0318528_10137674	Not Available	1297	Open in IMG/M
3300031564\|Ga0318573_10649202	Not Available	568	Open in IMG/M
3300031573\|Ga0310915_10473049	Not Available	890	Open in IMG/M
3300031680\|Ga0318574_10081238	Not Available	1768	Open in IMG/M
3300031723\|Ga0318493_10504485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300031736\|Ga0318501_10318472	Not Available	832	Open in IMG/M
3300031744\|Ga0306918_10257198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1334	Open in IMG/M
3300031744\|Ga0306918_10621905	Not Available	846	Open in IMG/M
3300031768\|Ga0318509_10509161	Not Available	672	Open in IMG/M
3300031770\|Ga0318521_10851957	Not Available	556	Open in IMG/M
3300031777\|Ga0318543_10400792	Not Available	615	Open in IMG/M
3300031792\|Ga0318529_10011628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3306	Open in IMG/M
3300031793\|Ga0318548_10473795	Not Available	612	Open in IMG/M
3300031795\|Ga0318557_10521662	Not Available	545	Open in IMG/M
3300031796\|Ga0318576_10475372	Not Available	590	Open in IMG/M
3300031833\|Ga0310917_10218815	Not Available	1276	Open in IMG/M
3300031833\|Ga0310917_10427880	Not Available	900	Open in IMG/M
3300031833\|Ga0310917_10547848	Not Available	786	Open in IMG/M
3300031833\|Ga0310917_10622750	Not Available	732	Open in IMG/M
3300031833\|Ga0310917_10790030	Not Available	641	Open in IMG/M
3300031879\|Ga0306919_11496589	Not Available	508	Open in IMG/M
3300031880\|Ga0318544_10131872	Not Available	953	Open in IMG/M
3300031880\|Ga0318544_10220684	Not Available	732	Open in IMG/M
3300031890\|Ga0306925_10172243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2331	Open in IMG/M
3300031890\|Ga0306925_10344899	Not Available	1600	Open in IMG/M
3300031890\|Ga0306925_11251325	Not Available	740	Open in IMG/M
3300031893\|Ga0318536_10550014	Not Available	579	Open in IMG/M
3300031910\|Ga0306923_10095561	Not Available	3348	Open in IMG/M
3300031910\|Ga0306923_10293992	Not Available	1856	Open in IMG/M
3300031910\|Ga0306923_11440797	Not Available	723	Open in IMG/M
3300031912\|Ga0306921_10080971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3740	Open in IMG/M
3300031912\|Ga0306921_10904956	Not Available	1001	Open in IMG/M
3300031912\|Ga0306921_11096686	Not Available	892	Open in IMG/M
3300031912\|Ga0306921_11988004	Not Available	619	Open in IMG/M
3300031941\|Ga0310912_10643783	Not Available	823	Open in IMG/M
3300031941\|Ga0310912_10920466	Not Available	672	Open in IMG/M
3300031945\|Ga0310913_10648860	Not Available	747	Open in IMG/M
3300031946\|Ga0310910_10521139	Not Available	943	Open in IMG/M
3300031947\|Ga0310909_10637630	Not Available	888	Open in IMG/M
3300031954\|Ga0306926_11914604	Not Available	669	Open in IMG/M
3300031954\|Ga0306926_12068087	Not Available	638	Open in IMG/M
3300032001\|Ga0306922_10992071	Not Available	867	Open in IMG/M
3300032035\|Ga0310911_10375789	Not Available	821	Open in IMG/M
3300032039\|Ga0318559_10612682	Not Available	508	Open in IMG/M
3300032042\|Ga0318545_10153253	Not Available	819	Open in IMG/M
3300032051\|Ga0318532_10136430	Not Available	870	Open in IMG/M
3300032055\|Ga0318575_10658602	Not Available	530	Open in IMG/M
3300032063\|Ga0318504_10163138	Not Available	1030	Open in IMG/M
3300032068\|Ga0318553_10029046	All Organisms → cellular organisms → Bacteria	2633	Open in IMG/M
3300032068\|Ga0318553_10109594	Not Available	1412	Open in IMG/M
3300032076\|Ga0306924_10773993	Not Available	1072	Open in IMG/M
3300032091\|Ga0318577_10323040	Not Available	738	Open in IMG/M
3300032261\|Ga0306920_101306506	Not Available	1043	Open in IMG/M
3300032261\|Ga0306920_101842513	Not Available	852	Open in IMG/M
3300033289\|Ga0310914_10563637	Not Available	1028	Open in IMG/M
3300033289\|Ga0310914_11410515	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300033290\|Ga0318519_10998921	Not Available	519	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.49%
Loam	Environmental → Terrestrial → Soil → Loam	13.51%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	69.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100379201	3300000793	Forest Soil	MMAPMAQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGD
AP72_2010_repI_A100DRAFT_10221763	3300000837	Forest Soil	DMTHIDQDLSAALYLLGFSLLRGDLGEIAEIRGAT*
JGI10216J12902_1208862111	3300000956	Soil	MQIDQDLYAALYVLGFNFLDGHLVSGEIAEIKGDMTIKLV
Ga0066388_1005018971	3300005332	Tropical Forest Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLVHPPG
Ga0066388_1057296691	3300005332	Tropical Forest Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLV
Ga0066903_1004667621	3300005764	Tropical Forest Soil	MDNTQIDQELRAALYLLSFNILGGDLLSAEIAEIKGNMTRTYLKIA*
Ga0066903_1011856886	3300005764	Tropical Forest Soil	MQIDQTLFATLYLLGFNFLGGDLFSGEIAEIKGDMTIK
Ga0066903_1019393422	3300005764	Tropical Forest Soil	MMATMMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKG
Ga0066903_1024773352	3300005764	Tropical Forest Soil	MMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGDMT
Ga0066903_1033877513	3300005764	Tropical Forest Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTIKL
Ga0066903_1037295843	3300005764	Tropical Forest Soil	MHIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGDMAIKLVHPP
Ga0066903_1042568952	3300005764	Tropical Forest Soil	MATMMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIK
Ga0066903_1044913871	3300005764	Tropical Forest Soil	MTHIDQDLSAALYMLGFKLLGGDLLSEEIAEIKGDMTIKL
Ga0066903_1054483332	3300005764	Tropical Forest Soil	MGNTQIDQNLFAALYMLGFNFSGRDLSSGEIAEIKGNM
Ga0070712_1000365501	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MCNTQIDQELRAALYLLGFNFLGGDFLSGEIAEIKGNMTIK
Ga0066660_115386791	3300006800	Soil	MANTQIDQNLCAALYLLGFNFLVGDLFSGEIAEIS
Ga0126374_102878591	3300009792	Tropical Forest Soil	MQIDQDLHAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLVHRPG
Ga0126384_118361151	3300010046	Tropical Forest Soil	MTHIDQDLSAALYLLGFSLLRGDLGEIAEIKGEMII
Ga0126384_118845361	3300010046	Tropical Forest Soil	MMQIDQDLYAALYVLGFNFLEGDLVEIAEIKGDMTIKLVHPPGEE
Ga0126382_108309803	3300010047	Tropical Forest Soil	MDNAQIDQELRAALYWLGFNFLGGDLFSGEIAEIKGDMTIKLVH
Ga0126373_126793711	3300010048	Tropical Forest Soil	MAQIDQNLSAALYMLGFKLLGGDLLSEKIAEIKGDMTIT
Ga0126372_114632211	3300010360	Tropical Forest Soil	MGNTQIDQDLRAALYLLGFNFLGGDLLSGEIAEIKGDMTIK
Ga0126372_122443902	3300010360	Tropical Forest Soil	MDNAQIDQELRAALYLLGFNFLGGDPFSGEIAEIKG
Ga0126378_112856564	3300010361	Tropical Forest Soil	MMRIDQNLFAALYVLGFNFLGGDRLSGEIAEIKGDMTIKLVHPPG
Ga0126378_120353331	3300010361	Tropical Forest Soil	MDNTQIDQDLSAALYLLGFSLLRGDLGEIAEIKGDMTIK
Ga0126378_121149141	3300010361	Tropical Forest Soil	MMATMMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGDMT
Ga0126379_105081751	3300010366	Tropical Forest Soil	MMQIDQNLSAALYMLGFKLSGGDLLRGEIAEIKGD
Ga0126383_122038711	3300010398	Tropical Forest Soil	MDNTQIDQDLRATLYLLGFNFLGGDLLSGEIAEIKGDMTIKLVHPP
Ga0126369_112114581	3300012971	Tropical Forest Soil	MQIDQDLCAALYLLGFNSLDGDLVSGEIAEIKGEMTIKLVHPPGEE
Ga0126369_122790961	3300012971	Tropical Forest Soil	MDNAQTDQELRAALYLLGFNFLGGDLFRGEIAEIKG
Ga0126369_122919293	3300012971	Tropical Forest Soil	MMRIDQNLFAALYVLGFNFLDSDHFSGEIAEIKGDMTIKLVHPP
Ga0182036_105990692	3300016270	Soil	MVNTQSDQDLFATLYLLGFNFLGGDSGEIAEIKGDMTIKLVHSPGE
Ga0182036_109326211	3300016270	Soil	MTHIDQDLSAALYMLGFKLLGGDLLSEEIAEIKGDMTIKLVHPRGDP
Ga0182041_111965112	3300016294	Soil	MQIDQDLHAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLVHPPG
Ga0182033_106664012	3300016319	Soil	MQIDQDLYAALYLLGFNFLGGDSGEIAEIKGDMTIKLVHSP
Ga0182033_117684931	3300016319	Soil	MTHVDQDLSAALYLLGFSLLRGDLGEIAEIKGDMTIKLVH
Ga0182033_118225131	3300016319	Soil	MGNTQSDQDLFAALYLLGFNFLGGDSGEIAEIKGDMTIK
Ga0182035_118890821	3300016341	Soil	MMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGDM
Ga0182035_119915151	3300016341	Soil	MGNTQSDQDLFAALYLLGFNFLGGDSGEIAEIKGDMTIKLVH
Ga0182040_101568473	3300016387	Soil	MQIDQDLCAALYVLGFNSLDGDLVSGEIAEIKGEMTI
Ga0182037_109851351	3300016404	Soil	MVNTQSDQDLFATLYLLGFNFLGGDSGEIAEIKGD
Ga0182039_100617547	3300016422	Soil	MMQIDQNLFAALYVLGFNFLDGDLFSGEIAEIKGDMTIK
Ga0182039_107594421	3300016422	Soil	MVNTQSDQDLFATLYLLGFNFLGGDSGEIAEIKGDMTIKLVH
Ga0182038_112846941	3300016445	Soil	MQTDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLMHP
Ga0066669_112704981	3300018482	Grasslands Soil	MGNTQIDQSLSAALYLLGFNFLGGDHFGGEIAEIKGDMT
Ga0210403_109473381	3300020580	Soil	MGNTQIDQNLFAALYMLGFNFLDGDLSSGEIAEIKGDMTIKLVRPP
Ga0210408_104107591	3300021178	Soil	MANTQIDQNLSAALYLLGFNFLGGDLFSGEIAEIRGDMTV
Ga0210387_108148011	3300021405	Soil	MGNTQIDQNLFAALYMLGFNFLDGDLSSGEIAEIKGDM
Ga0179589_100633261	3300024288	Vadose Zone Soil	MGNTQIDQNLFAALYMLGFNFLDGDLSSGEIAEIK
Ga0207685_104425252	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MDNAQIDQELRAALYLLGFNFLGGDFLSGEIAEIKGNMT
Ga0207699_103344731	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MDNAQIDQELRAALYLLGFNFLGGDFLSGEIAEIKGNMTIKLVHPP
Ga0207664_106235803	3300025929	Agricultural Soil	MGNTQIDQELRAALYLLGFNFLGGDFLSGEIAEIKGNMTIK
Ga0318541_106158921	3300031545	Soil	MQIDQDLCAALYVLGFNFLEGDLVSGEIAEIKGEM
Ga0318538_101260391	3300031546	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTI
Ga0318528_101376742	3300031561	Soil	MTHIDQDLSAALYMLGFKLLGGDPLSEEIAEIKGD
Ga0318573_106492021	3300031564	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGVIAEIKGDMTIKLVH
Ga0310915_104730492	3300031573	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMT
Ga0318574_100812383	3300031680	Soil	MQIDQNLFATLYLLGFNFLGGDLFSGEIAGIKGDMTIKLVHPP
Ga0318493_105044851	3300031723	Soil	MTQIDQNLLAALYVLGFNFLGGDLFSGEIAEIKGDM
Ga0318501_103184721	3300031736	Soil	MMATMMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGDM
Ga0306918_102571982	3300031744	Soil	MQIDQDLYAALYLLGFNFLGGDSGEIAEIKGDMTIKLVHSPGEE
Ga0306918_106219051	3300031744	Soil	MQIDQDLYAALYLLGFNFMGGDLVSGEIAQIKGDMTIKLVHPPG
Ga0318509_105091611	3300031768	Soil	MMRIDQNLFAALYVLGFNFLDSDHFSGEIAEIKGDMTIK
Ga0318521_108519571	3300031770	Soil	MTHIDQDLSAALYMLGFSLLRGDLSSGEIAEIKGDMTIKLVH
Ga0318543_104007921	3300031777	Soil	MMATMMQIDQNLSAALYMLGFKLLGGDLLSGEIAEVKGDMTIKLVHP
Ga0318529_100116281	3300031792	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDLTI
Ga0318548_104737951	3300031793	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTIK
Ga0318557_105216621	3300031795	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGVIAEIKGDMTI
Ga0318576_104753721	3300031796	Soil	MGNTQIDQTLLATLHLLGFNFLGGDLLSGEIAEIKGDMTIKLV
Ga0310917_102188152	3300031833	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLVHR
Ga0310917_104278801	3300031833	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGVIAEIKGDMTIKLVHRPGEEL
Ga0310917_105478481	3300031833	Soil	MMRIDQNLFAALYVLGFNFLDGDHFSGEIAEIKDDMTI
Ga0310917_106227502	3300031833	Soil	MDNTQIDQDLSAALYLLGFSLLRGDLGEIAEIKGDMTI
Ga0310917_107900301	3300031833	Soil	MQIDQDLHAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLVHPPGEE
Ga0306919_114965891	3300031879	Soil	MQIDQDLYAALYVLGFNFLEGDLVEIAEIKGDMTI
Ga0318544_101318722	3300031880	Soil	MMATMMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIK
Ga0318544_102206841	3300031880	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGVIAEIKGDMTIKLVHR
Ga0306925_101722431	3300031890	Soil	MMQIDQNLFAALYVLGFNFLDGDLFSGEIAEIKGDMTIKL
Ga0306925_103448995	3300031890	Soil	MQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGDMAIK
Ga0306925_112513252	3300031890	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLVH
Ga0318536_105500141	3300031893	Soil	LLYDNHGATMMATMMQIDQNLSAALYMLGFKLLGGDLLSGEMAEIK
Ga0306923_100955615	3300031910	Soil	MMATMMQIDQNLSAALYMLGFKLLGGDLLSGEMAEIKGDMTIK
Ga0306923_102939921	3300031910	Soil	MMQIDQNLFAALYVLGFNFLDGDLFSGEIAEIKGD
Ga0306923_114407971	3300031910	Soil	MGNTQTDQNLFAALQLLGFNFLGGDFLSGEIAEIKGD
Ga0306921_100809711	3300031912	Soil	MMQIDQNLFAALYVLGFNFLDGDLFSGEIAEIKGDMT
Ga0306921_109049561	3300031912	Soil	MMATMMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGDMTIKL
Ga0306921_110966861	3300031912	Soil	MQIDQDLYAALYVLGFNFLDGDLVCGEIAEIKGDMT
Ga0306921_119880041	3300031912	Soil	MGNTQIDQTLLATLHLLGFNFLGGDFFSGAIAEIKGD
Ga0310912_106437831	3300031941	Soil	MGNTQSDQDLFAALYLLGFNFLGGDSGEIAEIKGDM
Ga0310912_109204662	3300031941	Soil	MGNTQIDQTLLATLHLLGFNFLGSDLLSGEIAEIKGDM
Ga0310913_106488601	3300031945	Soil	MMQIDQNLFAALYVLGFNFLDGDLFSGEIAEIKGDMTI
Ga0310910_105211391	3300031946	Soil	MQIDQNLSAALYMLGFKLLGGSAEIAEIKGDMTIKLVH
Ga0310909_106376303	3300031947	Soil	MQIDQDLYAALYLLGFNFLGGDSGEIAEIKGDMTIK
Ga0306926_119146041	3300031954	Soil	MQIDQDLHAALYVLGFNFLDGDLVSGEIAEIKGDMTIKLV
Ga0306926_120680871	3300031954	Soil	MMQIDQNLFAALYLLGFNFLGGDRFSGEIAEIKGDMTI
Ga0306922_109920711	3300032001	Soil	MMRIDQNLFAALYVLGFNFLDGDHFSGEIAEIKGDMTIKLVHPPG
Ga0310911_103757891	3300032035	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDM
Ga0318559_106126821	3300032039	Soil	MGNTQTDQNLFAALQLLGFNFLGGDFLSGEIAEIK
Ga0318545_101532531	3300032042	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGVIAEIKGDMT
Ga0318532_101364302	3300032051	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGVIAEIKGDM
Ga0318575_106586021	3300032055	Soil	MGNTQIDQTLLATLHLLGFNFLGSDLLSGEIAEIKGDMTIKLVHP
Ga0318504_101631381	3300032063	Soil	MQIDQDLYAALYVLGFNFLDGDLVCGEIAEIKGDMTI
Ga0318553_100290461	3300032068	Soil	MQIDQNLFATLYLLGFNFLGGDLFSGEIAGIKGDMTIK
Ga0318553_101095943	3300032068	Soil	MQIDQDLYAALYVLGFNFLDGDLVSGEIAEIKGDLTIK
Ga0306924_107739932	3300032076	Soil	MMQIDQISAALYMLGFKLLGGDLSSGEIAEIKGDMTIK
Ga0318577_103230401	3300032091	Soil	MMQIDQNLFAALYLLGFNFLGGDRFSGEIAEIKGDMT
Ga0306920_1013065061	3300032261	Soil	MMATMMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGD
Ga0306920_1018425131	3300032261	Soil	MQIDQDLIAALYVLGFNFLGGDLVSGEIAEIKGDITIKLVHPPGE
Ga0310914_105636371	3300033289	Soil	MMQIDQNLSAALYMLGFKLLGGDLLSGEIAEIKGDMAIKLV
Ga0310914_114105151	3300033289	Soil	MTHTDQDLSAALYLLGFSLLRGDLGEIAEIRGDMTIKGTGLG
Ga0318519_109989211	3300033290	Soil	MQIDQDLYAALYVLGFNFLDGDRVSGEIAEIKGDMTIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086013

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences