Basic Information | |
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Family ID | F086079 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 111 |
Average Sequence Length | 44 residues |
Representative Sequence | LRHANVVILTDETEFARLLTACWQAERQAPNITVLSSDSWR |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 19.82 % |
% of genes from short scaffolds (< 2000 bps) | 16.22 % |
Associated GOLD sequencing projects | 89 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (79.279 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.324 % of family members) |
Environment Ontology (ENVO) | Unclassified (24.324 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (63.063 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 27.54% β-sheet: 0.00% Coil/Unstructured: 72.46% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Pfam ID | Name | % Frequency in 111 Family Scaffolds |
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PF02954 | HTH_8 | 5.41 |
PF03640 | Lipoprotein_15 | 0.90 |
COG ID | Name | Functional Category | % Frequency in 111 Family Scaffolds |
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COG4315 | Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) | Function unknown [S] | 0.90 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 79.28 % |
All Organisms | root | All Organisms | 20.72 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300002912|JGI25386J43895_10141046 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 599 | Open in IMG/M |
3300005447|Ga0066689_10077296 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1859 | Open in IMG/M |
3300006173|Ga0070716_100749971 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 751 | Open in IMG/M |
3300006755|Ga0079222_11969246 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 573 | Open in IMG/M |
3300006794|Ga0066658_10145767 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1192 | Open in IMG/M |
3300010364|Ga0134066_10382507 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 531 | Open in IMG/M |
3300011271|Ga0137393_10531143 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1009 | Open in IMG/M |
3300012351|Ga0137386_10046219 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 2997 | Open in IMG/M |
3300012362|Ga0137361_11878817 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 516 | Open in IMG/M |
3300021086|Ga0179596_10070696 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1513 | Open in IMG/M |
3300021401|Ga0210393_10134687 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1981 | Open in IMG/M |
3300021420|Ga0210394_10135356 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 2137 | Open in IMG/M |
3300021559|Ga0210409_10549974 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1020 | Open in IMG/M |
3300026281|Ga0209863_10006718 | All Organisms → cellular organisms → Bacteria | 3801 | Open in IMG/M |
3300026304|Ga0209240_1048996 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1593 | Open in IMG/M |
3300026320|Ga0209131_1411052 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 507 | Open in IMG/M |
3300026528|Ga0209378_1035672 | All Organisms → cellular organisms → Bacteria | 2564 | Open in IMG/M |
3300026542|Ga0209805_1275991 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 644 | Open in IMG/M |
3300026551|Ga0209648_10329089 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1069 | Open in IMG/M |
3300027605|Ga0209329_1009339 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1835 | Open in IMG/M |
3300027857|Ga0209166_10008353 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | 6854 | Open in IMG/M |
3300031753|Ga0307477_10383152 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 964 | Open in IMG/M |
3300031754|Ga0307475_11360224 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 548 | Open in IMG/M |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 24.32% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 23.42% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 11.71% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 5.41% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.50% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 4.50% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.60% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.70% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 2.70% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.80% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 1.80% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.80% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.80% |
Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 0.90% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.90% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.90% |
Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.90% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.90% |
Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.90% |
Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 0.90% |
Plant Roots | Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots | 0.90% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.90% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.90% |
Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 0.90% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300002681 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only) | Environmental | Open in IMG/M |
3300002912 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm | Environmental | Open in IMG/M |
3300002914 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm | Environmental | Open in IMG/M |
3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
3300005447 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 | Environmental | Open in IMG/M |
3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
3300005531 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 | Environmental | Open in IMG/M |
3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
3300005556 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 | Environmental | Open in IMG/M |
3300005560 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119 | Environmental | Open in IMG/M |
3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
3300006794 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 | Environmental | Open in IMG/M |
3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
3300007788 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 | Environmental | Open in IMG/M |
3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
3300010364 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015 | Environmental | Open in IMG/M |
3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
3300012096 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG | Environmental | Open in IMG/M |
3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
3300012351 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG | Environmental | Open in IMG/M |
3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012925 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300015241 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
3300017656 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015 | Environmental | Open in IMG/M |
3300019789 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
3300020170 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
3300021086 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300021088 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M | Environmental | Open in IMG/M |
3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Host-Associated | Open in IMG/M |
3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
3300022533 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
3300024330 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
3300024331 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09 | Environmental | Open in IMG/M |
3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026281 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes) | Environmental | Open in IMG/M |
3300026294 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes) | Environmental | Open in IMG/M |
3300026304 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes) | Environmental | Open in IMG/M |
3300026320 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes) | Environmental | Open in IMG/M |
3300026325 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes) | Environmental | Open in IMG/M |
3300026331 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes) | Environmental | Open in IMG/M |
3300026332 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes) | Environmental | Open in IMG/M |
3300026508 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A | Environmental | Open in IMG/M |
3300026528 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes) | Environmental | Open in IMG/M |
3300026538 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes) | Environmental | Open in IMG/M |
3300026542 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes) | Environmental | Open in IMG/M |
3300026551 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) | Environmental | Open in IMG/M |
3300027590 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027605 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes) | Environmental | Open in IMG/M |
3300027674 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027787 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes) | Environmental | Open in IMG/M |
3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
3300027857 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
3300027894 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes) | Environmental | Open in IMG/M |
3300027903 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes) | Environmental | Open in IMG/M |
3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
3300028536 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Host-Associated | Open in IMG/M |
3300029636 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300030399 | II_Palsa_E2 coassembly | Environmental | Open in IMG/M |
3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
3300031945 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 | Environmental | Open in IMG/M |
3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
3300032275 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0005471J37259_1169352 | 3300002681 | Forest Soil | VRNASVLILSDEPEFARLLTACWQAERLAPGITLLSSDLWKDHEA |
JGI25386J43895_101410462 | 3300002912 | Grasslands Soil | LRHANIVILTDETEFARLLTACWQGERQMPAITVLGSDLWNKQEAPAHDL |
JGI25617J43924_100589372 | 3300002914 | Grasslands Soil | LRSASVLILTDETDFARLLTACWQAEKHAPGITVLGSDLWR |
Ga0062595_1018543642 | 3300004479 | Soil | LPNFNVLILTDETEFARLLTACWQAERQTPAITVLASDLWKEHQDTP |
Ga0066689_100772961 | 3300005447 | Soil | LPHANVVILTDESEFARLLTACWQAERQAPNITVLNSNSWREQDAPDHDL |
Ga0066689_102980972 | 3300005447 | Soil | LRHANIVILTDETEFARLLTACWQGERQMPAITVLGSDLWNK |
Ga0070707_1010575051 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | LRHANVVILTDETEFARLLTACWQAERQAPLVTVLTSDLWQEQQA |
Ga0070738_101863491 | 3300005531 | Surface Soil | LRHASLLILTDDAEFARLLSACWQAERQAPRITVLSSDL |
Ga0070731_105921591 | 3300005538 | Surface Soil | VRSASVLILTDEPEFARLLTACWQAERHAPGITVL |
Ga0066707_103568721 | 3300005556 | Soil | LRHANVVILTDDSEFARLLTACWQAERQAPNITVL |
Ga0066670_101383201 | 3300005560 | Soil | LRHANVIILTDETEFARLLTACWQAERQAPVITVLT |
Ga0066705_106717411 | 3300005569 | Soil | LRSASVLILTDETEFARLLTACWRAERQAPGITVLGTDLWKDH |
Ga0070761_110599922 | 3300005591 | Soil | VRSASVLILTDEPEFARLLTACWQAERHAPGITVLSSELW |
Ga0070764_100592261 | 3300005712 | Soil | LQNVSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWNEH |
Ga0070716_1007499711 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | LPHANVVILTDESEFARLLTACWQAERQAPNITVLNSNSWREQDAPDHDLV |
Ga0075014_1001339272 | 3300006174 | Watersheds | LRNANVVILTDETEFARLLTACWQAERLAPNIAVINSDSWREQDAPAH |
Ga0075014_1006725251 | 3300006174 | Watersheds | LRHASVVILTDEAEFARLLTACWQAERRAPAVTVLTSDLWKAQEAPVGDLMVLG |
Ga0079222_119692461 | 3300006755 | Agricultural Soil | LRQANVVILTDETEFARLLTACWQAERQAPVVTVLTSELWQEQEAPARDLI |
Ga0066658_101457671 | 3300006794 | Soil | LRHANVVILTDESEFARLLTACWQAERQAPNITVLNSNSWREQDAPDHDLV |
Ga0075434_1005381271 | 3300006871 | Populus Rhizosphere | LPNFTVLILTDETEFARLLTACWQAERQPPAISVLASNLW |
Ga0099795_103117841 | 3300007788 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSGSWREQD |
Ga0099828_102228641 | 3300009089 | Vadose Zone Soil | LRNANVVILTDETEFARLLTACWQAERQAPNITVLNSDS |
Ga0074044_105434652 | 3300010343 | Bog Forest Soil | LRNANVLILTDEAEFARLLTACWQAERHAPRVTVLNSDVWTAQSGPT |
Ga0126370_115554622 | 3300010358 | Tropical Forest Soil | LKNANVVILTDESEFARLLSACWHAERHAPAITVLN |
Ga0126377_117627831 | 3300010362 | Tropical Forest Soil | LKHASVLILTDETEFARLLTSCWQTERQAPRITVLNS |
Ga0134066_103825072 | 3300010364 | Grasslands Soil | LRHANVVILTDDSEFARLLTACWQAERQAPNIAVLNSDSWHEPNAPAHDLV |
Ga0137393_105311431 | 3300011271 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQTERQAPNITVLNSDSWREQDAPAHDLV |
Ga0137389_104538121 | 3300012096 | Vadose Zone Soil | LRHANVIILTDETEFARLLTAGWQAERQAPRVTVLTSDLWQEQEAPARD |
Ga0137389_105466882 | 3300012096 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQAERQAPVVTVLTSDLWQEQEAPARD |
Ga0137388_119041432 | 3300012189 | Vadose Zone Soil | LRHANVLILTDETEFARLLTACWQAERQAPNITVLNSDSWREQDAPA |
Ga0137383_110216872 | 3300012199 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQTERQAPGVTVLNSDSWQDQDA |
Ga0137380_111923242 | 3300012206 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQTERQAPGVTVL |
Ga0137386_100462192 | 3300012351 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVINSDSWQEQNAQEHDLVVV* |
Ga0137360_102590312 | 3300012361 | Vadose Zone Soil | LRHANVLILTDETEFARLLTACWQAERQAPSITVIS |
Ga0137360_118443121 | 3300012361 | Vadose Zone Soil | LRSASVLILTDETDFARLLTACWQAERHAPGITVL |
Ga0137361_118788171 | 3300012362 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQDAPAHDLVVVG |
Ga0137398_107391572 | 3300012683 | Vadose Zone Soil | LILTDETDFARLLTACWQAEKHAPGITVLGSDLWRDHETLPH |
Ga0137413_113553501 | 3300012924 | Vadose Zone Soil | LVNSNVLIVTDETEFARLLTSCWQAERQAPGITILGSE |
Ga0137419_109281872 | 3300012925 | Vadose Zone Soil | LRSASVLILTDETDFARLLTACWQAEKHAPGITVLGSDLWRDHE |
Ga0137419_112659581 | 3300012925 | Vadose Zone Soil | LRHANVLVLTDETEFARLLTACWQAERQAPGITVIGSELWREQDVPR |
Ga0137418_104507961 | 3300015241 | Vadose Zone Soil | LRHANVVILTDDTEFARLHTACWQAERQPPNITVLNSDLWQEQNTTA |
Ga0182034_119674071 | 3300016371 | Soil | LRHANVVILTDETEFARLLTACWQAERHAPRVTVL |
Ga0134112_105259591 | 3300017656 | Grasslands Soil | LRHANVVILTDDSEFARLLTACWQAERQAPNITVLNSDSWHEQNAPSH |
Ga0137408_14816241 | 3300019789 | Vadose Zone Soil | LANSNVLIVTDETEFARLLTSCWQAERQAPGITILGSELWSEHEEIA |
Ga0179594_102845061 | 3300020170 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLSSDSWR |
Ga0179592_102438251 | 3300020199 | Vadose Zone Soil | LRSASVLILTDETDFARLLTACWQAEKHAPGITVLGSDL |
Ga0210407_101110291 | 3300020579 | Soil | LRSASVLILTDETDFARLLTACWQAEKHAPGITVLGSDLWK |
Ga0210403_111209382 | 3300020580 | Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLN |
Ga0210401_106460762 | 3300020583 | Soil | VRNASVLILSDEPEFARLLTACWQAERVAPGITVLSSDLWK |
Ga0179596_100706961 | 3300021086 | Vadose Zone Soil | LRNANVIILTDETEFGRLLTACWQTERQAPNITVLSSDLWREQDAPAHDPVVLGP |
Ga0210404_100610291 | 3300021088 | Soil | LRHANVVILTDETEFARLLTACWQTERQAPGVTVLTSD |
Ga0210404_100640172 | 3300021088 | Soil | LRHANVVILTDETEFARLLTACWQTERQAPNITVLNSDSWREQDAP |
Ga0210406_105076701 | 3300021168 | Soil | VRNASVLILSDEPEFARLLTACWQAERLAPGITVLSSDLWK |
Ga0210400_107987931 | 3300021170 | Soil | LRHANVVILTDETEFARLLTACWQTERQAPNITVLNSDSWRE |
Ga0210400_114847161 | 3300021170 | Soil | LQNSSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWNEHEAVAHEL |
Ga0210405_104858781 | 3300021171 | Soil | VRNASVLILSDEPEFARLLTACWQAERLAPGITVL |
Ga0210408_106286942 | 3300021178 | Soil | LRNANVVILTDETEFARLLTACWQAERQAPNIAVVNSDSW |
Ga0210388_115289502 | 3300021181 | Soil | VRNASVLILSDEPEFARLLTACWQAERLAPGITVLSSDLWKDHE |
Ga0213876_100415601 | 3300021384 | Plant Roots | LQNSSVLIVTDEPEFARLLTACWRAEREVPAITVLGSDVWNEHEGVAHELAVVG |
Ga0210393_101346873 | 3300021401 | Soil | LRNANVLILTDESEFARLLTACWQAERQAPGITVLGSESWKQHEAL |
Ga0210393_116919312 | 3300021401 | Soil | VRNASVLILSDEPEFARLLTACWQAERLAPGITLLSS |
Ga0210385_100640284 | 3300021402 | Soil | LQNFNVLIVTDEPEFARLLTACWRAEREVPAITVLAS |
Ga0210397_104970362 | 3300021403 | Soil | LQNVSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWNEHEG |
Ga0210386_101074323 | 3300021406 | Soil | LPNSNALIVTDETEFARLLTSCWQAERQAPAITVLGSD |
Ga0210394_101353561 | 3300021420 | Soil | LRHANVVILTDETEFARLLTACWQAERQAPAITVLGSSLWREHEGTSHDLVVV |
Ga0210384_105280032 | 3300021432 | Soil | LRSASVLILTDETDFARLLTACWRAEKHAPGITVL |
Ga0210390_113156822 | 3300021474 | Soil | LRNANVLILTDDAEFARLLTACWQTERQAPRVAVLSSDL |
Ga0210398_101031741 | 3300021477 | Soil | LQNFNVLIVTDEPEFARLLTACWRAEREVPAITVLASDVWNEHEGVAHELAVV |
Ga0210410_111430091 | 3300021479 | Soil | LRHANVVILTDETEFARLLTACWQAEPQAPNITVLNSESWQE |
Ga0210409_105499741 | 3300021559 | Soil | LRHANVVILTDETEFARLLTACWQAEPQAPNITVLNSESWQKQDAPAHDLV |
Ga0242662_101301022 | 3300022533 | Soil | LRNANVLILTDESEFARLLTACWQAERQAPGITVLGSESWK |
Ga0137417_10998861 | 3300024330 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQAERQAPNQAPNITVLN |
Ga0137417_14397063 | 3300024330 | Vadose Zone Soil | MRQQSVILTDETEFARFADGCWQAERQAPNITVLIAIVA |
Ga0247668_10052301 | 3300024331 | Soil | MPGSFSPLRHANLLILTDDAEFARLLSACWQAERQAPRITVL |
Ga0207671_109072801 | 3300025914 | Corn Rhizosphere | LQNASVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWGEH |
Ga0209863_100067181 | 3300026281 | Prmafrost Soil | LANSNVLIVTDETEFARLLTSCWQAERQAPGITVLGSDLWS |
Ga0209839_102317881 | 3300026294 | Soil | LRNANVLILTDEAEFARLLTACWQTERQAPRVTVLNSDVWHGQSGPT |
Ga0209240_10489961 | 3300026304 | Grasslands Soil | LRNANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQEAPAHDLV |
Ga0209131_14110521 | 3300026320 | Grasslands Soil | LRNANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQEAPAHDLVVV |
Ga0209152_103055991 | 3300026325 | Soil | LRNASVLILTDETDFARLLTSCWQADRHAPAITVLGSELWKNHEVA |
Ga0209267_11020332 | 3300026331 | Soil | LRHANVVILTDDSEFARLLTACWQAERQAPNITVLNSDSWHE |
Ga0209803_11281492 | 3300026332 | Soil | LRHANIVILTDETEFARLLTACWQGERQMPAITVLGSDLWNKQE |
Ga0257161_10890912 | 3300026508 | Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWPEQDTP |
Ga0209378_10356724 | 3300026528 | Soil | LRHANVVILTDDSEFARLLTACWQAERQAPNITVLNSDSWHEQNAPSHDLVV |
Ga0209056_105739501 | 3300026538 | Soil | LRHASVVILTDETEFARLLTACWQAERHAPAVTVLTSDL |
Ga0209805_11572131 | 3300026542 | Soil | LRHANVVILTDDSEFARLLTACWQAERQAPNITVLNS |
Ga0209805_12759912 | 3300026542 | Soil | LRHANVVILTDDSEFARLLTACWQAERQAPNIAVLNSDSWHEPNAPAHDLVVVGP |
Ga0209648_103290892 | 3300026551 | Grasslands Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQDAPAHDLV |
Ga0209648_104976511 | 3300026551 | Grasslands Soil | LRNANVIILTDETEFGRLLTACWHAERQAPNITVLNSDLWR |
Ga0209116_10640663 | 3300027590 | Forest Soil | LPNSNVLIVTDETEFARLLTACWQTERQAPGITVLGSDL |
Ga0209329_10093391 | 3300027605 | Forest Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQDAPAHDLVVVGP |
Ga0209118_11080381 | 3300027674 | Forest Soil | LRSANVLILSDETDFARLLTACWQAERHAPAITVL |
Ga0209074_101728491 | 3300027787 | Agricultural Soil | LRHANVVILTDETEFARLLTACWQAERQAPVVTVLTS |
Ga0209274_102020091 | 3300027853 | Soil | VRNASVLILTDEPEFARLLTACWQTERQAPGITVLSSELWKDHEATP |
Ga0209274_106769771 | 3300027853 | Soil | VRSASVLILTDEPEFARLLTACWQAERHAPGITVLSSELWK |
Ga0209693_101933011 | 3300027855 | Soil | LQNFSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWKEHEGVAHELAVV |
Ga0209166_100083536 | 3300027857 | Surface Soil | LRHANVVILTDETEFARLLTACWQADRQAPVVTVLTSDLWQEQQ |
Ga0209068_102547271 | 3300027894 | Watersheds | LRNANVVILTDETEFARLLTACWQAERLVPNIAVLNSDSWREQDALVLA |
Ga0209488_105684361 | 3300027903 | Vadose Zone Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQEAPTHD |
Ga0209006_110486231 | 3300027908 | Forest Soil | LQNSSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWNE |
Ga0137415_105830631 | 3300028536 | Vadose Zone Soil | LRHANVLVLTDETEFARLLTACWQAERQAPGITVIGSE |
Ga0137415_110083351 | 3300028536 | Vadose Zone Soil | LANSNVLIVTDETEFARLLTSCWQAERQAPGITILGSELWSEHE |
Ga0265338_105921912 | 3300028800 | Rhizosphere | LRNANVLILTDEAEFGRLLSTCWQAERQAPRVTIVDSEH |
Ga0222749_106329342 | 3300029636 | Soil | LRHANVVILTDETEFGRLLTACWQAERQAPNITVLNSDSW |
Ga0311353_107942451 | 3300030399 | Palsa | LRNANVLILTDEAEFGRLLTTCWRTERQPPRMTILDSDNWHGQE |
Ga0307477_103831522 | 3300031753 | Hardwood Forest Soil | LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQEAPAHDLVVV |
Ga0307475_113602241 | 3300031754 | Hardwood Forest Soil | LRHANVVILTDDTEFARLLTACWQAERQAPNITVLNSDSWHEQDAPALDLIVVGP |
Ga0310913_111945921 | 3300031945 | Soil | LRQANVVILTDETEFARLLTACWQAERQAPVVTVLTSDLCQEQQ |
Ga0307479_104826012 | 3300031962 | Hardwood Forest Soil | LRSASVLILTDEPDFARLLTACWQAEKHAPGITVLGSDLW |
Ga0307479_112779582 | 3300031962 | Hardwood Forest Soil | LRSASVLILTDETDFARLLTACWQAEKHGPGITVMGSD |
Ga0315270_111881231 | 3300032275 | Sediment | LRHTNVIVLTDETEFARLLTACWQAERHVPAIAVLNSDLWLRQQHLPCDLLV |
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