Metagenome Family F086204

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086204
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	60 residues
Representative Sequence	MDVLGRFPRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCDECKSIIATLHGPS
Number of Associated Samples	85
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.85 %
% of genes near scaffold ends (potentially truncated)	70.27 %
% of genes from short scaffolds (< 2000 bps)	79.28 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.955 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.532 % of family members)
Environment Ontology (ENVO)	Unclassified (45.946 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.243 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 33.73% Coil/Unstructured: 66.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF05876	GpA_ATPase	11.71
PF01068	DNA_ligase_A_M	10.81
PF13412	HTH_24	1.80
PF00072	Response_reg	0.90
PF06055	ExoD	0.90
PF00196	GerE	0.90
PF13458	Peripla_BP_6	0.90
PF04392	ABC_sub_bind	0.90
PF04851	ResIII	0.90
PF08281	Sigma70_r4_2	0.90
PF09084	NMT1	0.90
PF13701	DDE_Tnp_1_4	0.90
PF04773	FecR	0.90
PF12728	HTH_17	0.90
PF14235	DUF4337	0.90
PF00589	Phage_integrase	0.90
PF07536	HWE_HK	0.90
PF03330	DPBB_1	0.90
PF13676	TIR_2	0.90
PF14525	AraC_binding_2	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG5525	Phage terminase, large subunit GpA	Mobilome: prophages, transposons [X]	11.71
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	10.81
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	10.81
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.90
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.90
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.90
COG3932	Exopolysaccharide synthesis protein ExoD	Cell wall/membrane/envelope biogenesis [M]	0.90
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.90
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
All Organisms	root	All Organisms	45.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
cellular organisms	root	All Organisms → cellular organisms	45.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.23 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.71 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.70 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.80 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.90 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.91 %
Bradyrhizobium sp. LTSP857	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP857	0.90 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104715071	Not Available	636	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10178197	Not Available	503	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1035492	Not Available	911	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10121523	Not Available	546	Open in IMG/M
3300001867\|JGI12627J18819_10214280	Not Available	776	Open in IMG/M
3300003911\|JGI25405J52794_10064968	Not Available	792	Open in IMG/M
3300004633\|Ga0066395_10059096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1726	Open in IMG/M
3300004633\|Ga0066395_10449848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	734	Open in IMG/M
3300005178\|Ga0066688_10975681	Not Available	518	Open in IMG/M
3300005332\|Ga0066388_100708718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1612	Open in IMG/M
3300005332\|Ga0066388_101416931	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300005332\|Ga0066388_103832737	Not Available	767	Open in IMG/M
3300005332\|Ga0066388_106283228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	599	Open in IMG/M
3300005406\|Ga0070703_10200376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	783	Open in IMG/M
3300005437\|Ga0070710_10658047	Not Available	735	Open in IMG/M
3300005468\|Ga0070707_100985908	Not Available	808	Open in IMG/M
3300005713\|Ga0066905_100828883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300005713\|Ga0066905_101714902	Not Available	577	Open in IMG/M
3300005764\|Ga0066903_107011268	Not Available	584	Open in IMG/M
3300005764\|Ga0066903_107481471	Not Available	564	Open in IMG/M
3300005937\|Ga0081455_10004173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16295	Open in IMG/M
3300005937\|Ga0081455_10029794	All Organisms → cellular organisms → Bacteria	4971	Open in IMG/M
3300005937\|Ga0081455_10046556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3762	Open in IMG/M
3300005937\|Ga0081455_10210958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1447	Open in IMG/M
3300006028\|Ga0070717_10101107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2448	Open in IMG/M
3300006038\|Ga0075365_10021424	All Organisms → cellular organisms → Bacteria	4032	Open in IMG/M
3300006038\|Ga0075365_10493823	Not Available	865	Open in IMG/M
3300006163\|Ga0070715_10961917	Not Available	529	Open in IMG/M
3300006844\|Ga0075428_100600308	Not Available	1176	Open in IMG/M
3300006844\|Ga0075428_100646761	Not Available	1128	Open in IMG/M
3300006847\|Ga0075431_100336957	Not Available	1518	Open in IMG/M
3300009100\|Ga0075418_10567339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1221	Open in IMG/M
3300009137\|Ga0066709_103730226	Not Available	553	Open in IMG/M
3300010044\|Ga0126310_11246037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	599	Open in IMG/M
3300010046\|Ga0126384_10507481	Not Available	1041	Open in IMG/M
3300010047\|Ga0126382_10243173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1313	Open in IMG/M
3300010047\|Ga0126382_11013421	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300010366\|Ga0126379_10886737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	994	Open in IMG/M
3300010398\|Ga0126383_10119313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2400	Open in IMG/M
3300012362\|Ga0137361_11561772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300012971\|Ga0126369_12612150	Not Available	590	Open in IMG/M
3300015371\|Ga0132258_10467306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3148	Open in IMG/M
3300015373\|Ga0132257_100017688	All Organisms → cellular organisms → Bacteria → Proteobacteria	7425	Open in IMG/M
3300016270\|Ga0182036_10575856	Not Available	900	Open in IMG/M
3300016319\|Ga0182033_11084883	Not Available	714	Open in IMG/M
3300016357\|Ga0182032_10024234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3594	Open in IMG/M
3300016357\|Ga0182032_10303898	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300016387\|Ga0182040_10643813	Not Available	862	Open in IMG/M
3300016422\|Ga0182039_11030975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300016445\|Ga0182038_10018723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4118	Open in IMG/M
3300016445\|Ga0182038_10053892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2704	Open in IMG/M
3300017792\|Ga0163161_10604017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300021560\|Ga0126371_10170969	All Organisms → cellular organisms → Bacteria	2250	Open in IMG/M
3300021560\|Ga0126371_13804360	Not Available	509	Open in IMG/M
3300022756\|Ga0222622_10539471	Not Available	837	Open in IMG/M
3300025905\|Ga0207685_10110880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	1189	Open in IMG/M
3300025915\|Ga0207693_11480629	Not Available	501	Open in IMG/M
3300025922\|Ga0207646_11357707	Not Available	619	Open in IMG/M
3300025928\|Ga0207700_10250092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1514	Open in IMG/M
3300027616\|Ga0209106_1134408	Not Available	553	Open in IMG/M
3300027907\|Ga0207428_11058100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300027909\|Ga0209382_10024015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7375	Open in IMG/M
3300028708\|Ga0307295_10217611	Not Available	544	Open in IMG/M
3300028754\|Ga0307297_10083138	Not Available	1033	Open in IMG/M
3300028828\|Ga0307312_10020358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3769	Open in IMG/M
3300031544\|Ga0318534_10666598	Not Available	589	Open in IMG/M
3300031545\|Ga0318541_10615439	Not Available	607	Open in IMG/M
3300031545\|Ga0318541_10782470	Not Available	532	Open in IMG/M
3300031561\|Ga0318528_10238890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	974	Open in IMG/M
3300031573\|Ga0310915_10096074	Not Available	1994	Open in IMG/M
3300031573\|Ga0310915_10672656	Not Available	731	Open in IMG/M
3300031640\|Ga0318555_10141765	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300031681\|Ga0318572_10035356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2624	Open in IMG/M
3300031681\|Ga0318572_10438096	Not Available	777	Open in IMG/M
3300031748\|Ga0318492_10002964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6194	Open in IMG/M
3300031778\|Ga0318498_10027638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2444	Open in IMG/M
3300031781\|Ga0318547_10947552	Not Available	538	Open in IMG/M
3300031796\|Ga0318576_10276051	Not Available	793	Open in IMG/M
3300031797\|Ga0318550_10380823	Not Available	683	Open in IMG/M
3300031821\|Ga0318567_10396831	Not Available	781	Open in IMG/M
3300031835\|Ga0318517_10133326	Not Available	1104	Open in IMG/M
3300031846\|Ga0318512_10523065	Not Available	602	Open in IMG/M
3300031879\|Ga0306919_11415693	Not Available	524	Open in IMG/M
3300031896\|Ga0318551_10083556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1675	Open in IMG/M
3300031897\|Ga0318520_10339332	Not Available	910	Open in IMG/M
3300031910\|Ga0306923_10962281	Not Available	930	Open in IMG/M
3300031910\|Ga0306923_11125651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	844	Open in IMG/M
3300031945\|Ga0310913_10322745	Not Available	1091	Open in IMG/M
3300031945\|Ga0310913_10791513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300031954\|Ga0306926_10313718	All Organisms → cellular organisms → Bacteria → Proteobacteria	1940	Open in IMG/M
3300031954\|Ga0306926_12937806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300032001\|Ga0306922_10879963	Not Available	931	Open in IMG/M
3300032010\|Ga0318569_10234022	Not Available	853	Open in IMG/M
3300032025\|Ga0318507_10367678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300032035\|Ga0310911_10041321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2361	Open in IMG/M
3300032035\|Ga0310911_10313682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP857	903	Open in IMG/M
3300032051\|Ga0318532_10193235	Not Available	723	Open in IMG/M
3300032054\|Ga0318570_10518554	Not Available	544	Open in IMG/M
3300032076\|Ga0306924_12353963	Not Available	538	Open in IMG/M
3300032090\|Ga0318518_10524941	Not Available	606	Open in IMG/M
3300032091\|Ga0318577_10283706	Not Available	793	Open in IMG/M
3300032261\|Ga0306920_104072088	Not Available	529	Open in IMG/M
3300033289\|Ga0310914_10408849	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300033290\|Ga0318519_10031157	All Organisms → cellular organisms → Bacteria → Proteobacteria	2518	Open in IMG/M
3300033290\|Ga0318519_10128423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1395	Open in IMG/M
3300033290\|Ga0318519_10352177	Not Available	870	Open in IMG/M
3300033290\|Ga0318519_10743803	Not Available	601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.68%
Host-Associated	Host-Associated	15.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.78%
Plants	Host-Associated → Plants	15.32%
Aquatic	Environmental → Aquatic	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.31%
Roots	Host-Associated → Plants → Roots	1.80%
Sediment	Environmental → Aquatic → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.96%
Loam	Environmental → Terrestrial → Soil → Loam	19.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.11%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.31%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.80%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1047150712	3300000364	Soil	MTDLLDRFSLVWCDTCEKVQPMTFAVMPADDKNDHDAADIVCNECKSVIATLHAARHQ*
AF_2010_repII_A1DRAFT_101781971	3300000597	Forest Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDKNEHDAADIVCNECKSVIATLHGPSAHRAGVR
AF_2010_repII_A100DRAFT_10354921	3300000655	Forest Soil	MDVLARFSRVWCPTCNKTQPMIFDVMKANDKNDQDAADIVCDECKSIIATLHGPSTHRAGVRT
AF_2010_repII_A001DRAFT_101215232	3300000793	Forest Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDQDAADIVCDECKSIIATLHGPSTH
JGI12627J18819_102142802	3300001867	Forest Soil	MDFLARFPRVWCPTCNKPQRIKFEVMKGNDKNDHAAADIICDECKSIIATLHGRARK*
JGI25405J52794_100649681	3300003911	Tabebuia Heterophylla Rhizosphere	RTVWTTDMTDRLERFPYVWCDTCEKIQPMTFDVMPADDRNDHDAADIVCNECKSIIATLHAARQ*
Ga0066395_100590965	3300004633	Tropical Forest Soil	MDVLARFSRVWCPTCNKTQPMIFDMMKANDKNDHDAADIVCDECKSIIATLHGPS
Ga0066395_104498482	3300004633	Tropical Forest Soil	MTDRLERFPLVWCGTCEKIQSMVFDERPANKKNDHPAADIVCGECK*
Ga0066688_109756811	3300005178	Soil	MDVLARFPRVWCPTCNKTRPMILDVMKANDKNDHDAADIVCAECKSIIATLHAPSAAGAR
Ga0066388_1007087182	3300005332	Tropical Forest Soil	MTDRLERFPLVWCGTCEKIQSMVFDERPANKKNDHPAADIVCGECKSIIATLHAARQH*
Ga0066388_1014169314	3300005332	Tropical Forest Soil	MDVLARFSRVWCPSCNKTQPMIFDVMKANDKNDHDAADIICEECKSIIATLHGPSA
Ga0066388_1038327371	3300005332	Tropical Forest Soil	MDRLEHFPLVWCPTCNKVQRLIFDVLKANDKNVPSAKSIIATLHAPDAR
Ga0066388_1062832282	3300005332	Tropical Forest Soil	MDVLPRFSRVWCPTCNKTQPMIFDVMKANDKNDHEAADIVCDECKSIIATLHGP
Ga0070703_102003761	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MDVLARFPRVWCPSCNKTQPMIFDVMKSNDKNDHDAADIICQDCKSIIATLHGPSAHRPG
Ga0070710_106580472	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MDTFGTLPRVWCESCQKIQRMIFDVMPASDKNPRDVADIVCDECKSIIATLHTA*
Ga0070707_1009859081	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VRFSRVWCPGCNKTQPMIFDVVKANDKNNHDAADIICEECKSIIATLHG
Ga0066905_1008288831	3300005713	Tropical Forest Soil	MDVLARFSRVWCPTCKKTQPMIFDVMKANDKNDKNDHDAADIVCNECKSVIATLHGP
Ga0066905_1017149022	3300005713	Tropical Forest Soil	MDVLARFPRVWCSTCNKTQPMIFEVMKANDKNDHDAADIVCDECKSIIATLHGPSTHWIATRPDS*
Ga0066903_1070112681	3300005764	Tropical Forest Soil	MDVLARFPRVWCPTCNKTQPMTFDVMKANDAADIVCNECKSVIATLHGPRAHRAGVRTDR
Ga0066903_1074814712	3300005764	Tropical Forest Soil	MDVLARFPRVWCPTSNKTRPMIFDVMKANDKNDYDAADIICDECKSIIATLHGPSA*
Ga0066903_1090028611	3300005764	Tropical Forest Soil	MDVLPRFSRIWCPTCNKTQPMIFDVMKANDKNDHDAADIVCDECKSIIA
Ga0081455_1000417312	3300005937	Tabebuia Heterophylla Rhizosphere	MTDQLERFPYVWCDTWEKIQPMIFDVMPADDQNDHDAADIVCNECKSIIATLHAARR*
Ga0081455_100297948	3300005937	Tabebuia Heterophylla Rhizosphere	MTDRLDRFPYVWCDTCEKIQPMTFDVIAADDRNDHDAADIVCNECSSIIATMHAARR*
Ga0081455_100465567	3300005937	Tabebuia Heterophylla Rhizosphere	MTDRLERFPYVWCDTCEKIQPMTFDVMPADDRNDHDAADIVCNECKSIIATLHAARQ*
Ga0081455_102109582	3300005937	Tabebuia Heterophylla Rhizosphere	MTDQLERFPFVWCDTCEKIQPMTFDVMPAGDENEHEAADIICNECKSVIATLHAAR*
Ga0070717_101011078	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRNLLARFPQVWCPTCNKTQPMIFDAMKANDKKDYDVADIICDECKSIIATLHGP
Ga0075365_100214244	3300006038	Populus Endosphere	MTDRLERFSYVWCDTCEKIQPMTFDMMPADDQNDHDAADIVCNECKSIIATLHAARR*
Ga0075365_104938231	3300006038	Populus Endosphere	MTDLLDRLPLVWCDTCEKVQPMTFAVMPADDKKDHDAADIVCNECKSVIATLHAARQH*
Ga0070715_109619172	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MDFLARFPRVWCPTCNKPQRIKFDVMKANDKNDHAAADIICDECKSIIATLHGPRAHRAGAHPDRIEKALAMAGQ
Ga0075428_1006003083	3300006844	Populus Rhizosphere	MDTLERFPRVWCDTCEAIQPMVFDVMKADDKTDHDAADIVCDHCKSIVATLHAPKAKQAKVRPKRAAKAQEMA
Ga0075428_1006467613	3300006844	Populus Rhizosphere	MTDLLDRFPLVWCDTCEKVQPMTFAVMPADDKNDHDAADIVCNECKSVIATLHAARRH*
Ga0075431_1003369575	3300006847	Populus Rhizosphere	MDTLERFPRVWCDTCEAIQPMVFDVMKADDKTDHDAADIVCDHCKSIVAT
Ga0075418_105673393	3300009100	Populus Rhizosphere	MTDRLEHFPYVWCDTCEKIQPMIFDVMPADDQNDHDAADIVCNECKSIVATLHAARDR*
Ga0066709_1037302261	3300009137	Grasslands Soil	MIERLDRFPFVWCGTCQKVQPMIFDVMPADDKNDHVAADIICDECKSIIATVHAARNVRRAVR*
Ga0114129_116048882	3300009147	Populus Rhizosphere	LDTLERFPRAWCDTCGKVQPVTLDVMPANEKNPHAAADIVCDECKSIIATLHATERSPDWRAHQ*
Ga0126310_112460372	3300010044	Serpentine Soil	MDIVERFPFVYCNTCKKVQPMIFDVLKAENVSDQEAADIVCDECKPVIATLHARIRH*
Ga0126384_105074812	3300010046	Tropical Forest Soil	MNSEADVVDTLERFSLVWCPTCNKTQKMIFVMSVGDNDDDAADIVCDHCKSIIAT
Ga0126382_102431731	3300010047	Tropical Forest Soil	VLARFPRVWCSTCNKTQPMIFEVMKANDKNDHDAADIVCDECKSIIATLHGPSTHWIATRPDS*
Ga0126382_110134212	3300010047	Tropical Forest Soil	MDTLERFPRVWCDTCQKIQRTIFDVMKANDKNDHDSADVICAECRSVIATLHAPSA*
Ga0126372_106412293	3300010360	Tropical Forest Soil	LDTLERFPRAWCDTCGKVQPVTLDVVPANENNPHAAADIVCDECKSIIATLHAPSGRQASARPKR
Ga0126379_108867373	3300010366	Tropical Forest Soil	MTDRLERFPLVWCGTCEKIQSMVFDERPANKKNDHPAADIVCGECKSIIATLHA
Ga0126383_101193135	3300010398	Tropical Forest Soil	MDRLDHFPRVWCPTCNKVQPLIFDVLKANDKNEHDAADIVCAECKSIIASLRGRSPGRRA
Ga0137361_115617721	3300012362	Vadose Zone Soil	MDRLDHFPLIWCPTCNKVQPLIFDVLKAHDKNEHDAVDIVCAECKSIIATLHAP
Ga0126369_126121501	3300012971	Tropical Forest Soil	MNSEADVVDTLERFPLVWCPTCDKTRKMIFVMSVGDNDDDADIVCDHCKSIIATLRTPGTQK
Ga0132258_104673063	3300015371	Arabidopsis Rhizosphere	LTRRQARWKNKTMTDLLDRFSLVWCDTCEKVQPMTFAVMPADDKNDHDAADIVCNECKSVIATLHAARHQ*
Ga0132257_1000176888	3300015373	Arabidopsis Rhizosphere	MDTLERFPLIYRPTCDKTQRMIFDVLPANAKNPREAADIVCDECKSIVATLHSPDNRVL*
Ga0182036_105758562	3300016270	Soil	WCPTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLHGPSAHRAGVRTDKAAKARAPHGAP
Ga0182033_110848832	3300016319	Soil	CPTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLHGPSAHRAGVRTDKAAKARAPHGAP
Ga0182032_100242349	3300016357	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDHDAADIICDECKSIIATLHGPSAHRAGVRT
Ga0182032_103038983	3300016357	Soil	MDVLARFPRVWCPTCNKTQPMTFDVMKANDAADIVCNECKSVIATLHGPRAHRAGVRTDRAEKARAMAGQ
Ga0182040_106438131	3300016387	Soil	MDVLARFPRVWCPTCNKTQSMIFDVMKANDKNDHDAADIVCDECKSIIATLHGPSTHRAGVRTG
Ga0182039_110309751	3300016422	Soil	MDVLARFPRVWCPTCNKTQSMIFDVMKANDKNDHDAADIVCDECKSIIAT
Ga0182038_100187231	3300016445	Soil	MDVLAQFSRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIAT
Ga0182038_100538927	3300016445	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDHDAADIICDECKSIIATLHGPSSHRAGVRTDRAAKARAMAGR
Ga0163161_106040173	3300017792	Switchgrass Rhizosphere	MDVLKRFPRVWCPTCGKTQPMIFDVMKASDKNDHDAADIVCGECKSIMATLHA
Ga0126371_101709694	3300021560	Tropical Forest Soil	MDVLARFPRVWCPTCNKTQPMTFDVMKANDAADIVCNECKSVIATLHGPR
Ga0126371_138043601	3300021560	Tropical Forest Soil	MDVLARFSRVWCPTCNKTQPMIFDVMKANDKNDHDVADIVCDECKSIIATLHGPSAHR
Ga0222622_105394711	3300022756	Groundwater Sediment	LGQVMDIVERFPFVYCDTCKKMQPMIFDVLKANNLTDHDAADIVCDECKSVIATLHARTK
Ga0207685_101108803	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MDFLARFPRVWCPTCNKTQRMIFDAMKANDKNDPDAADIICDECKSIIATLHGPRAHRAGAHPDRIEK
Ga0207693_114806292	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDTFGTLPRVWCESCQKIQRMIFDVMPASDKNPRDVADIVCDECKSIIATLHTAWCGLA
Ga0207646_113577072	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDVLARFPRVWCPNCNKTQPMIFDVMKANDKNDHDAADIVCQECKSIIATLHGPNAQRPSVRSKRAAKAR
Ga0207700_102500925	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MDFLARFPRVWCPTCNKPQRIKFEVMKANDKNDHAAADIICDECKSIIATLHGPRAHRAGAHPDRI
Ga0209106_11344082	3300027616	Forest Soil	MDSLERFPRVWCDNCNKVKPMIFHVMKANDKNDHDLADIVCADCKSIIATLHTACQN
Ga0207428_110581001	3300027907	Populus Rhizosphere	MDVLARFPRVWCPTCNKTQPMTFDVMKANDKNDHDAADIVCDECKSIIATLRGPGAH
Ga0209382_100240157	3300027909	Populus Rhizosphere	MTDRLERFSYVWCDTCEKIQPMTFDMMPADDQNDHDAADIVCNECKSIIATLHAARR
Ga0307295_102176111	3300028708	Soil	MPDNATVARDLKERFPRVWCPTCNKTQPMIFDVMKANDKDEHDAADIVCGECKSIIATLHAPSVRRPGGRTK
Ga0307297_100831382	3300028754	Soil	MDIVERFPFVYCNTCKKVQPMIFDVLKAENVSDHEAADIVCDECKPVIATLHARTKH
Ga0307312_100203581	3300028828	Soil	VMDIVERFPFVYCDTCKKMQPMIFDVLKANNLTDHDAADIVCDECKSVIATLHARTKH
Ga0318534_106665982	3300031544	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCDECKSIIATLQGPSAHRAGVRTDRAAKAR
Ga0318541_106154392	3300031545	Soil	MDVLARFSRVWCPTCNKTQPMIFDVMKANDKNDHDVADIVCDECKSIIATLHGPSAHRA
Ga0318541_107824701	3300031545	Soil	MDRLDHFPRVWCPTCNKVQPLIFDVLKANDKNEHDAADIICAECKSIIATLHAPDARRAACA
Ga0318528_102388902	3300031561	Soil	MDTLERFPRVWCDTCRKIQRMIFDVMKANDKNDHDSADVICAECRSVIATLHAPSVSFIAPPNTLLQ
Ga0310915_100960741	3300031573	Soil	MDVLAQFSRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLHG
Ga0310915_106726561	3300031573	Soil	MDVLGRFPRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCDECKSIIATLHGPSAHRAGVR
Ga0318555_101417654	3300031640	Soil	MDVLARCSRVWCPSCNKTRPMIFDVMKANDKNDHDAADIICEECKSIIATLHGPSAHRACVTRGPRKHGKWRARK
Ga0318572_100353565	3300031681	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNEHDAADIVCNECKSVIATLHGPSAHRA
Ga0318572_104380962	3300031681	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDHDAADIICDECKSIIATLHGPSSHRAGVRTD
Ga0318492_100029641	3300031748	Soil	MDVLAQFSRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLHGPS
Ga0318498_100276385	3300031778	Soil	PTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLHGPSAHRAGVRTDKAAKARAPHGAP
Ga0318547_109475522	3300031781	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNEHDAADIVCNECKSVIATLHGP
Ga0318576_102760511	3300031796	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDHDAADIICDECKSIIATLHGPSSHRAGVRTDRAAKARAM
Ga0318550_103808231	3300031797	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDKNEHDAADIVCNECKSVIA
Ga0318567_103968311	3300031821	Soil	TCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLHGPSAHRAGVRTDKAAKARAPHGAP
Ga0318517_101333261	3300031835	Soil	RVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLHGPSAHRAGVRTDKAAKARAPHGAP
Ga0318512_105230651	3300031846	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDKNEHDAADIVCNECKSVIATLHGPSAHRAGVRTGR
Ga0306919_114156932	3300031879	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDKNEHDAADIVCNECKSVIAT
Ga0318551_100835561	3300031896	Soil	MDVLAQFSRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLH
Ga0318520_103393321	3300031897	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDKNEHDAADIVCNECKSVIATLHG
Ga0306923_109622811	3300031910	Soil	MDVLARFSRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCDECKSIIATLHGPSAHRAGVRTDRAAKARAM
Ga0306923_111256511	3300031910	Soil	MDVLAQFSRVWCPTCNKTQPMIFDVRKANDKNDHDAADIVCDECKSIIATLHGPSAHR
Ga0310913_103227451	3300031945	Soil	MDVLARFSRVWCPTCNKTQPMIFDMMKANDKNNHDAADIVCDECKSIIATLHGPSAHRAGVRTDRAEKA
Ga0310913_107915131	3300031945	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKAKDKNDHDAADIVCDECKSIIAHGPSAHRAGVRTHRVA
Ga0306926_103137184	3300031954	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDKNEHDAADIVCNECKSVIATLHGPSAHRAGVRTGRAEKA
Ga0306926_129378061	3300031954	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKAKDKNDHDAADIVCDECKSIIAHGPSAHRAGVRTHRVAKAR
Ga0306922_108799631	3300032001	Soil	MDVLARFSRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCDECKSIIATLHGPSAHRAGVRTDRA
Ga0318569_102340221	3300032010	Soil	MDVLARFPRVWCPTCNKTQPVIFDVMKANNKNDHDAADIVCNECKSVIATLDG
Ga0318507_103676781	3300032025	Soil	MDVLAQFSRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCNECKSVIATLHR
Ga0310911_100413216	3300032035	Soil	MDVLARCSRVWCPSCNKTRPMIFDVMKANDKNDHDAADIICEECKSIIATLHGPSAHR
Ga0310911_103136821	3300032035	Soil	MDVLARFPRVWCPTCNKTQSMIFDVMKANDKNDHDAADIVCDECKSIIA
Ga0318549_105759722	3300032041	Soil	MDVLARFPRVWCPTCNKTQPMIFDVMKANDKNDKNEHDAADIVCNECKSV
Ga0318532_101932351	3300032051	Soil	MDTLERFPRVWCDTCRKIQRMIFDVMKANDKNDHDSADVICAECRSVIATLHAPSVSFIASR
Ga0318570_105185541	3300032054	Soil	MDTLERFPRVWCDTCRKIQRMIFDVMKANDKNDHDSADVICAECRSVIATLHAPSVSFIASRILFC
Ga0306924_123539631	3300032076	Soil	MDVLGRFPRVWCPTCNKTQPMIFDVMKANDKNDHDAADIVCDECKSIIATLHGPS
Ga0318518_105249412	3300032090	Soil	MDTLERFPRVWCDTCRKIQRMIFDVMKANGKNDDDSADVICAECRSVIATLHAPSAKRVARM
Ga0318577_102837061	3300032091	Soil	MDTLERFPRVWCDTCRKIQRMIFDVMKANGKNDDDSADVICAECRSVIATLHAPSVSFIA
Ga0306920_1040720881	3300032261	Soil	MDVLAQFSRVWCPTCSKTQPMIFDVRKANDKNDHDAADIVCNECKSIIATLHGPSAHRAGVRTDKAAKARAPHGAP
Ga0310914_104088491	3300033289	Soil	MDVLARFPRVWCPTCNKTHPMIFDVMKANDKNDQDAADIVCDECKSIIATLHGPST
Ga0318519_100311575	3300033290	Soil	MDVLAQFSRVWCPTCNKTQPMIFDVDIVCNECKSVIATLHGSSAHRAGVRTGRAEK
Ga0318519_101284234	3300033290	Soil	MDVLARFSRVWCPTCNKTQPMIFDVMKANDAADIVCNECKYVIATLHGPSAHRAGVRTDRAEKARAMAGQE
Ga0318519_103521771	3300033290	Soil	MDVLARFPRVWCPTCNKTQPVIFDVMKANNKNDHDAADIVCNECKSVIATLDGPSAHRAGVRTDRA
Ga0318519_107438032	3300033290	Soil	MDVLARFSRVWCPTCNKTQPMIFDMMKANDKNNHDAADIVCDECKSIIATLQG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086204

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences