Metagenome / Metatranscriptome Family F086219

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086219
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	90 residues
Representative Sequence	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSG
Number of Associated Samples	107
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.10 %
% of genes near scaffold ends (potentially truncated)	82.88 %
% of genes from short scaffolds (< 2000 bps)	91.89 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.261 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.414 % of family members)
Environment Ontology (ENVO)	Unclassified (19.820 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.153 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 18.89% Coil/Unstructured: 81.11%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF08388	GIIM	7.21
PF00078	RVT_1	4.50
PF13432	TPR_16	0.90
PF11294	DUF3095	0.90
PF02371	Transposase_20	0.90
PF09917	DUF2147	0.90
PF13602	ADH_zinc_N_2	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.26 %
Unclassified	root	N/A	38.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.26 %
Unclassified	root	N/A	38.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.26 %
Unclassified	root	N/A	38.74 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.76 %
Unclassified	root	N/A	38.74 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	40.54 %
Unclassified	root	N/A	38.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.70 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	2.70 %

Name	Rank	Taxonomy	Distribution
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	40.54 %
Unclassified	root	N/A	38.74 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.60 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	40.54 %
Unclassified	root	N/A	38.74 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	3.60 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	40.54 %
Unclassified	root	N/A	38.74 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	2.70 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1.80 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1.80 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Thiocapsa marina	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina	40.54 %
Unclassified	root	N/A	38.74 %
unclassified Acidithiobacillus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus	2.70 %
unclassified Paraburkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia	0.90 %
unclassified Cupriavidus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus	0.90 %
Paraburkholderia mimosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia mimosarum	0.90 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.90 %
Cupriavidus taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus taiwanensis	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Thiocapsa marina 5811	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	40.54 %
Unclassified	root	N/A	38.74 %
Acidithiobacillus sp. MC6.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus → Acidithiobacillus sp. MC6.1	2.70 %
Paraburkholderia sp. BL23I1N1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	0.90 %
Cupriavidus sp. UYPR2.512	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	0.90 %
Rhizobium mongolense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense	0.90 %
Paraburkholderia mimosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia mimosarum	0.90 %
Cupriavidus taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus taiwanensis	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Thiocapsa marina 5811	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	40.54 %
Unclassified	root	N/A	38.74 %
Acidithiobacillus sp. MC6.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus → Acidithiobacillus sp. MC6.1	2.70 %
Rhizobium mongolense USDA 1844	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844	0.90 %
Paraburkholderia sp. BL23I1N1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	0.90 %
Cupriavidus sp. UYPR2.512	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	0.90 %
Paraburkholderia mimosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia mimosarum	0.90 %
Cupriavidus taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus taiwanensis	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02F5NPC	Not Available	540	Open in IMG/M
3300000734\|JGI12535J11911_1011034	Not Available	753	Open in IMG/M
3300001179\|JGI12660J13575_101682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	675	Open in IMG/M
3300001204\|JGI12652J13314_101258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	637	Open in IMG/M
3300001629\|JGI20240J16301_10450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	593	Open in IMG/M
3300002678\|Ga0005477J37265_105090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	868	Open in IMG/M
3300002872\|Ga0006762J43184_103911	Not Available	518	Open in IMG/M
3300004140\|Ga0058894_1475168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	650	Open in IMG/M
3300005105\|Ga0066812_1004635	Not Available	819	Open in IMG/M
3300005162\|Ga0066814_10084896	Not Available	574	Open in IMG/M
3300005456\|Ga0070678_100508914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1063	Open in IMG/M
3300005467\|Ga0070706_100457397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	1188	Open in IMG/M
3300005543\|Ga0070672_101198245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia mimosarum	676	Open in IMG/M
3300005719\|Ga0068861_100533256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	1067	Open in IMG/M
3300006028\|Ga0070717_11643156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	582	Open in IMG/M
3300006163\|Ga0070715_10622315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	635	Open in IMG/M
3300006163\|Ga0070715_11053834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	509	Open in IMG/M
3300006174\|Ga0075014_100039734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1961	Open in IMG/M
3300006954\|Ga0079219_10249431	All Organisms → cellular organisms → Bacteria → Proteobacteria	1055	Open in IMG/M
3300006954\|Ga0079219_10760911	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300007255\|Ga0099791_10012813	Not Available	3535	Open in IMG/M
3300009162\|Ga0075423_11726756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	674	Open in IMG/M
3300009176\|Ga0105242_11789452	Not Available	652	Open in IMG/M
3300009545\|Ga0105237_11043775	Not Available	824	Open in IMG/M
3300009639\|Ga0116122_1197180	Not Available	631	Open in IMG/M
3300009643\|Ga0116110_1017478	Not Available	2821	Open in IMG/M
3300009792\|Ga0126374_11024527	All Organisms → cellular organisms → Bacteria → Proteobacteria	649	Open in IMG/M
3300009840\|Ga0126313_11061603	Not Available	665	Open in IMG/M
3300010047\|Ga0126382_11981160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	554	Open in IMG/M
3300010103\|Ga0127500_1070684	Not Available	632	Open in IMG/M
3300010110\|Ga0126316_1060553	Not Available	501	Open in IMG/M
3300010111\|Ga0127491_1108773	Not Available	584	Open in IMG/M
3300010371\|Ga0134125_11111880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	865	Open in IMG/M
3300010400\|Ga0134122_10991248	All Organisms → cellular organisms → Bacteria → Proteobacteria	822	Open in IMG/M
3300011332\|Ga0126317_10309840	Not Available	609	Open in IMG/M
3300012059\|Ga0153991_1073265	Not Available	524	Open in IMG/M
3300012205\|Ga0137362_10927974	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300012404\|Ga0134024_1340980	Not Available	535	Open in IMG/M
3300012410\|Ga0134060_1244018	Not Available	523	Open in IMG/M
3300012469\|Ga0150984_105178076	Not Available	569	Open in IMG/M
3300012492\|Ga0157335_1046539	Not Available	506	Open in IMG/M
3300012494\|Ga0157341_1025829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	608	Open in IMG/M
3300012505\|Ga0157339_1044428	Not Available	568	Open in IMG/M
3300012882\|Ga0157304_1058419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	613	Open in IMG/M
3300012892\|Ga0157294_10215559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	573	Open in IMG/M
3300012911\|Ga0157301_10159734	Not Available	725	Open in IMG/M
3300012912\|Ga0157306_10399713	Not Available	537	Open in IMG/M
3300012927\|Ga0137416_10075936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	2454	Open in IMG/M
3300012972\|Ga0134077_10336674	Not Available	640	Open in IMG/M
3300012985\|Ga0164308_10943539	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300012987\|Ga0164307_11637842	Not Available	545	Open in IMG/M
3300013096\|Ga0157307_1069871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus → Acidithiobacillus sp. MC6.1	694	Open in IMG/M
3300014156\|Ga0181518_10344267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	732	Open in IMG/M
3300014495\|Ga0182015_10901388	Not Available	554	Open in IMG/M
3300015077\|Ga0173483_10449276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	675	Open in IMG/M
3300015200\|Ga0173480_10535027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	708	Open in IMG/M
3300016294\|Ga0182041_11825896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	564	Open in IMG/M
3300016371\|Ga0182034_11852437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	532	Open in IMG/M
3300017821\|Ga0187812_1200369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	638	Open in IMG/M
3300017933\|Ga0187801_10042477	Not Available	1633	Open in IMG/M
3300017995\|Ga0187816_10121682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	1124	Open in IMG/M
3300018006\|Ga0187804_10082144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1303	Open in IMG/M
3300018033\|Ga0187867_10475482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	688	Open in IMG/M
3300018085\|Ga0187772_10047936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus taiwanensis	2613	Open in IMG/M
3300019362\|Ga0173479_10837720	Not Available	513	Open in IMG/M
3300020580\|Ga0210403_10871809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	711	Open in IMG/M
3300021170\|Ga0210400_11141299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	629	Open in IMG/M
3300021307\|Ga0179585_1160507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	644	Open in IMG/M
3300021439\|Ga0213879_10220122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	568	Open in IMG/M
3300021474\|Ga0210390_11328016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	575	Open in IMG/M
3300021860\|Ga0213851_1483078	Not Available	663	Open in IMG/M
3300022504\|Ga0242642_1015661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	984	Open in IMG/M
3300022724\|Ga0242665_10312369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	553	Open in IMG/M
3300023077\|Ga0247802_1078701	Not Available	554	Open in IMG/M
3300026866\|Ga0207786_103857	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300026878\|Ga0208891_1005112	Not Available	549	Open in IMG/M
3300026984\|Ga0208732_1000629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	2158	Open in IMG/M
3300027119\|Ga0209522_1000543	All Organisms → cellular organisms → Bacteria → Proteobacteria	2339	Open in IMG/M
3300027172\|Ga0208098_1021338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	645	Open in IMG/M
3300027527\|Ga0209684_1003521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus → Acidithiobacillus sp. MC6.1	2667	Open in IMG/M
3300027548\|Ga0209523_1002445	All Organisms → cellular organisms → Bacteria → Proteobacteria	2814	Open in IMG/M
3300027821\|Ga0209811_10352207	Not Available	570	Open in IMG/M
3300027874\|Ga0209465_10040314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	2220	Open in IMG/M
3300028717\|Ga0307298_10190591	Not Available	602	Open in IMG/M
3300028790\|Ga0307283_10192551	Not Available	580	Open in IMG/M
3300028875\|Ga0307289_10073248	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300030776\|Ga0075396_1838259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	574	Open in IMG/M
3300031057\|Ga0170834_104579507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	682	Open in IMG/M
3300031097\|Ga0308188_1016818	Not Available	677	Open in IMG/M
3300031123\|Ga0308195_1068023	Not Available	548	Open in IMG/M
3300031446\|Ga0170820_12145174	Not Available	594	Open in IMG/M
3300031543\|Ga0318516_10587570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	636	Open in IMG/M
3300031682\|Ga0318560_10719497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	539	Open in IMG/M
3300031719\|Ga0306917_10994553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	655	Open in IMG/M
3300031744\|Ga0306918_11003268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	648	Open in IMG/M
3300031879\|Ga0306919_10621097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. UYPR2.512	833	Open in IMG/M
3300032008\|Ga0318562_10156703	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300032039\|Ga0318559_10223350	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300032076\|Ga0306924_11578644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus → Acidithiobacillus sp. MC6.1	692	Open in IMG/M
3300032756\|Ga0315742_13036668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	541	Open in IMG/M
3300034006\|Ga0334934_040518	Not Available	664	Open in IMG/M
3300034268\|Ga0372943_0769065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844	637	Open in IMG/M
3300034393\|Ga0334914_056521	Not Available	533	Open in IMG/M
3300034662\|Ga0314783_047401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	798	Open in IMG/M
3300034662\|Ga0314783_098412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	621	Open in IMG/M
3300034676\|Ga0314801_161872	Not Available	549	Open in IMG/M
3300034676\|Ga0314801_186506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	523	Open in IMG/M
3300034677\|Ga0314802_016799	Not Available	713	Open in IMG/M
3300034680\|Ga0370541_057467	Not Available	521	Open in IMG/M
3300034779\|Ga0334945_094968	Not Available	551	Open in IMG/M
3300034820\|Ga0373959_0127788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811	626	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.29%
Host-Associated	Host-Associated	11.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.48%
Aquatic	Environmental → Aquatic	10.81%
Plants	Host-Associated → Plants	10.81%
Fungi	Host-Associated → Fungi	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.48%
Freshwater	Environmental → Aquatic → Freshwater	9.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.50%
Sediment	Environmental → Aquatic → Sediment	0.90%
Mycelium	Host-Associated → Fungi → Mycelium	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.46%
Loam	Environmental → Terrestrial → Soil → Loam	15.32%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.70%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.90%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.90%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.71%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.80%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.90%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.90%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.80%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.80%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	1.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.80%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.90%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.90%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.90%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000734	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81	Environmental	Open in IMG/M
3300001179	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3	Environmental	Open in IMG/M
3300001204	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3	Environmental	Open in IMG/M
3300001629	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF006	Environmental	Open in IMG/M
3300002678	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF126 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002872	Avena fatua rhizosphere microbial communities - H1_Bulk_Litter_5 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004140	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF224 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010103	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010111	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012059	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC075 MetaG	Host-Associated	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300026866	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 76 (SPAdes)	Environmental	Open in IMG/M
3300026878	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC (SPAdes)	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027119	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300030776	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031097	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_183 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300034006	Biocrust microbial communities from Mojave Desert, California, United States - 30SMC	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034393	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 10HMS	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034676	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034677	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034779	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 41SMS	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_05669420	2170459010	Grass Soil	MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSDSGRPGIVRRAGMAGIVRHSQTKGRATANANPSLEPPSVGGGYKRERNSGRRGVRSRIGARYS
JGI12535J11911_10110343	3300000734	Tropical Forest Soil	MNRSAKDGARSSPHYGGEDIWVPLRRTKVFAGDTVGKSVNDSGRPGIVQWEGMAGIVRHSQTKGRATGNAKPGLKPPDGRCGYKRERNSGRCGARSRIGARYS*
JGI12660J13575_1016821	3300001179	Forest Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPASGRCGYKRK
JGI12652J13314_1012581	3300001204	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAXDTVGKSVSDSGRPGIVRRQGMVGILRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSDRCGARSRIGAR
JGI20240J16301_104503	3300001629	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPAN
Ga0005477J37265_1050902	3300002678	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPVRGRCGYKRKRNSDRCGARGRIGARYS*
Ga0006762J43184_1039112	3300002872	Avena Fatua Rhizosphere	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGAD
Ga0058894_14751682	3300004140	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRCGARSRI
Ga0066812_10046352	3300005105	Soil	MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSDSGRPGIVRRAGMAGIVRHSQTKGRATANANPSLEPPSVGGGYKRERNSGRRGVRSRIGARYS*
Ga0066814_100848963	3300005162	Soil	MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSDSGRPGIVRRAGMAGIVRHSQTKGRATANANPSLEPPSVGG
Ga0070678_1005089141	3300005456	Miscanthus Rhizosphere	MNRSAEDGEWSSPQSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEGPTE
Ga0070706_1004573973	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPARGRCGYKRKRNSGRCGARGRIGARYS*
Ga0070672_1011982451	3300005543	Miscanthus Rhizosphere	MNRSAEDGEWSSPHYGGEGTGVPPRRTKVCAGDTVGKSVSDPGRPGIVRWEGMAGIVRHSQTKGRETGNAKPGLEPPMVGADISASEGPT
Ga0068861_1005332561	3300005719	Switchgrass Rhizosphere	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMARILRHSQTKGRATGNAKSSLKPVRGRCGYKR
Ga0070717_116431561	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGILRHSQTKGRATGNAKSSLKPVRGRCGYKRKRNS
Ga0070715_106223153	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKSVSDSGRPGIVQRQGMAGIVRHSQTKGRATGNAKPSLKPVRGRCGYKRKRNSD
Ga0070715_110538341	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MNRSAKDGAWSSPHYGDEGAWVLLRRTKVCASDTVGKNVSDSGRPGIVRRQGMAGILRHSQTKGRATGNAKPSLKPVRGRCGYKRKRNS
Ga0075014_1000397343	3300006174	Watersheds	MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSDSGRPGIVRRAGMAGIVRHSQTKGRATANANPSLEPPSVGGGYKRERNSGRRGVRRRIGARYS*
Ga0079219_102494312	3300006954	Agricultural Soil	MNRSAEDGEWSSPHYGGEGTGVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEGPTEAVPGV
Ga0079219_107609113	3300006954	Agricultural Soil	MNRSAKDGAWSSPHYGDEGAWVPLRCTKVCAGDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKP
Ga0099791_100128133	3300007255	Vadose Zone Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVAKNVSDSGRPGIVRRLGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRCGARGRIGARYS*
Ga0075423_117267563	3300009162	Populus Rhizosphere	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKSVSDSGRPGIVRRQGMAGILRHSQTKGRATGNAKPS
Ga0105242_117894521	3300009176	Miscanthus Rhizosphere	MNRSAEDGEWSSPQSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEGPTEA
Ga0105237_110437751	3300009545	Corn Rhizosphere	MNRSAEDGEWSSPHYGGEGTGVPPRRTKVCAGDTVGKSVSDPGRPGIVRWEGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEGPTEA
Ga0116122_11971801	3300009639	Peatland	MNRSAKDGEWSSPHYWGEGNWVPLRRTKVFAGDTAGKSVSNSGRPGIVQRAGMAEIVRHSPTKGRETGDAKPGLEPPEGRSGYKRKRSSSRCGARSR
Ga0116110_10174783	3300009643	Peatland	MNRSAKDGEWSSPHYWGEGNWVPLRRTKVFAGDTAGKSVSNSGRPGIVQRAGMAEIVRHSPTKGRETGDAKPGLEPPEGRSGYKRKRSSSRCGARSRIGARYS*
Ga0126374_110245271	3300009792	Tropical Forest Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRGQGMAGIVRHSQTKGRATGNAKPSLKPANGR
Ga0126313_110616031	3300009840	Serpentine Soil	MNRSAEDGEWSSPQSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAK
Ga0126382_119811602	3300010047	Tropical Forest Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPRIVRGQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNS
Ga0127500_10706841	3300010103	Grasslands Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVP
Ga0126316_10605531	3300010110	Soil	MNRSAEDGEWSSPRYGGEGTWVPPRRTKVCAGDTVGKSVSGPGRPGIVHREGMAGIVRHSQTKGRETDNSKPGLKPPMVGA
Ga0127491_11087731	3300010111	Grasslands Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVRWEGMAGIVRHSQTKGRETGNAKPGLKPPMVGTDISASEGPTEAMPGVGSG
Ga0134125_111118801	3300010371	Terrestrial Soil	MNRSAEDGEWSSPQSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLEPPMVGADISVSEGPT
Ga0134122_109912482	3300010400	Terrestrial Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGN
Ga0126317_103098401	3300011332	Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASE
Ga0153991_10732651	3300012059	Attine Ant Fungus Gardens	MNRSAEDGALSSPHYGDEGAWVPLRRTKVCADDTVGKSVSDSGRPGIVRRQGMAGILRHSQTKGRATGNAKPS
Ga0137362_109279742	3300012205	Vadose Zone Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPA
Ga0134024_13409801	3300012404	Grasslands Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVRWEGMAGIVRHSQTKGRETGNAKPGLKPPMVGADIS
Ga0134060_12440181	3300012410	Grasslands Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHWEGMAGIGRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEA
Ga0150984_1051780761	3300012469	Avena Fatua Rhizosphere	MNRSAKDGEWSSPHYGGEGVWVPPRRTKVCADDTVGKSVSDSGRPGIVQRAGMAGIVRHSQTKGRATVNAKPGLEPPGGRCGYKRERSSGRCGARSRIGAR
Ga0157335_10465391	3300012492	Arabidopsis Rhizosphere	MNRSAEDGEWSSPHYRGEGTGVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLEPPMVGA
Ga0157341_10258292	3300012494	Arabidopsis Rhizosphere	MNRSAKDGAWSSPHYGGEGTWVPLRRTKVFAGDTVGKSVSDSGRPGIVQRRGMAGIVRHSQTKGRATGNAKPSLKPSDGRCGYK
Ga0157339_10444281	3300012505	Arabidopsis Rhizosphere	MNRSAEDGEWSSPHDGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVP
Ga0157304_10584191	3300012882	Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPA
Ga0157294_102155591	3300012892	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGILRHSQTKGRATGNAKPSLKPANGRCG
Ga0157301_101597341	3300012911	Soil	MNRSAEDGEWSSPHAGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLEPPMVGADISASEGPTEAVPGVGS
Ga0157306_103997131	3300012912	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRRGARSR
Ga0137416_100759363	3300012927	Vadose Zone Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVAKNVSDSGRPGIVRRLGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRCGARSRIGARYS*
Ga0134077_103366741	3300012972	Grasslands Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVRWEGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEG
Ga0164308_109435391	3300012985	Soil	MNRSAEDGEWSSPQSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPSLEPPMVGADISASEGPTEAVPG
Ga0164307_116378421	3300012987	Soil	MNRSAEDGEWSSPQSGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVG
Ga0157307_10698712	3300013096	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSRKPANGRCGYKRKRNSDRC
Ga0181518_103442671	3300014156	Bog	MNRSAKDGARSSPHYGGEDIWVPLRRTKVFAGDTVGKSVSDSGRPGIVQREGMAGIVRHSQTKGRETGNAKPSLKPPDGRCGYKRKRNSGQCDARS
Ga0182015_109013881	3300014495	Palsa	MNRSAKDGEWSSPHYWGEGNWVPLRRTKVFAGDTAGKSVSNSGRPGIVQRAGMAEIVRHSPTKGRETGDAKPGLEPPEGRSGYKRKRSSSR
Ga0173483_104492761	3300015077	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRETGNAKPGLEPPMVGADISASEGPTEAVPGV
Ga0173480_105350271	3300015200	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKNVSDSGRPGIVRRQGMAGILRHSQTKGRATGNAKPSLKPANGRCG
Ga0182041_118258961	3300016294	Soil	MNRSAEDGAWSSANYGDEGAWVPLRRTKVCADDTVGKGVSDSGRPGIVRGQGMAGIVRHSQTKGRATGN
Ga0182034_118524371	3300016371	Soil	MNRSAEDGAWSSANYGDEGAWVPLRRTKVCADDTVGKGVSDSGRPGIVRGQGMAGIVRHSQTKGRATGNVKPSLKPATVGVDISASEIPADA
Ga0187812_12003691	3300017821	Freshwater Sediment	MNRSAKDGARSSPHYGGEDIWVPLRRTKVFAGDTVGKSVSDSGRPGIVQREGMAGIVRHSQTKGRATGNAKPGLEPPDGRCGYKRKRNSGRCGARSRIGARY
Ga0187801_100424772	3300017933	Freshwater Sediment	MNRSAKDGARSSPHYGGEDIWVPLRRTKVFAGDTVGKSVSDSGRPGIVQREGMAGIVRHSQTKGRATGNAKPGLKPSEGRRGYKRERNSGRCGARSRIGARYS
Ga0187816_101216822	3300017995	Freshwater Sediment	MWVPLRRTRVFAGDTVGKSVSDSGRPGIVQREGMAGIVRHSQTKGRATGNAKPGLKPPDGRCGYKRKRNCGRCGARSRIGARYS
Ga0187804_100821441	3300018006	Freshwater Sediment	MNWSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKNVSDSGRPGIVQRQGMAGIVRHSQTKGRATGNAK
Ga0187867_104754821	3300018033	Peatland	MNRSAKDGARSSPHYGGEDIWVPLRRTKVFAGDTVGKSVSDSGRPGIVQREGMAGIVRPSQTKGRETGNAKPGLKPPDGRCGYKRKRNSGQCDARSRIGAWYS
Ga0187772_100479363	3300018085	Tropical Peatland	MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSDSGRPGIVRRAGMAGIVRRSQTKGRATANANPSLEPPSVGGGYKRERNSGRCGVRSRIGARYS
Ga0173479_108377201	3300019362	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLEPPMGGAD
Ga0210403_108718091	3300020580	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPVRGRCGYKRKRNSDRCGARSRIGARY
Ga0210400_111412991	3300021170	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKP
Ga0179585_11605071	3300021307	Vadose Zone Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVAKNVSDSGRPGIVRRLGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRCGARSRIG
Ga0213879_102201221	3300021439	Bulk Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKNVSDSGRPGIVQRQGMAGIVRHSQTKGRATGNTKPSLKPASGRCG
Ga0210390_113280161	3300021474	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSA
Ga0213851_14830781	3300021860	Watersheds	MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSDSGRPGIVRRAGMAGIVRHSQTKGRATANANPSLEPPSVGGGYKRERNSG
Ga0242642_10156613	3300022504	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRCGARS
Ga0242665_103123691	3300022724	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGILRHSQTKGRATGNAKPSLKPVRGRCGYKRKRNSDRC
Ga0247802_10787011	3300023077	Soil	MNRSAKDGEWSSPHYGGEGVWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLEPPMVGADI
Ga0207786_1038572	3300026866	Tropical Forest Soil	MNRSAKDGARSSPHYGGEDIWVPLRRTKVFAGDTVGKSVNDSGRPGIVQWEGMAGIVRHSQTKGRATGNAKPGLKPPDGRCGYKRERNSGRCGARSRIGARYS
Ga0208891_10051122	3300026878	Soil	MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSDSGRPGIVRRAGMAGIVRHSQTKGRATANANPSLEPPSVGGGYKRERNSGRRGVR
Ga0208732_10006292	3300026984	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRCGARSRIGARYS
Ga0209522_10005432	3300027119	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVEKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRRGYKRKRNSS
Ga0208098_10213382	3300027172	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSG
Ga0209684_10035213	3300027527	Tropical Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKSVSDSGRPGIVQRQGMAGILRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRCGARSRNGARYS
Ga0209523_10024455	3300027548	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPVRGRCGYKRKRNSGRCGARSRIGARYS
Ga0209811_103522071	3300027821	Surface Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSASNPGRPGIVHREGMAGIVRHSQTKGRATGNAKP
Ga0209465_100403142	3300027874	Tropical Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKSVSDSGRPGIVQRQGMAGILRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRRGARSRIGARYS
Ga0307298_101905911	3300028717	Soil	MNRSAEDGEWSSPRSGGEGTWVPPRRTKVCADDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEGPTEAMPGVG
Ga0307283_101925511	3300028790	Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEA
Ga0307289_100732481	3300028875	Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEGPT
Ga0075396_18382591	3300030776	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMVGILRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSDRCGARSR
Ga0170834_1045795072	3300031057	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMVGILRHSQTKGRATGNAKPSLK
Ga0308188_10168181	3300031097	Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHWEGMAGIVRHSQTKGRATGNAKPSLKPARGRCGYKRKRNSGRCGARGRIG
Ga0308195_10680231	3300031123	Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLK
Ga0170820_121451742	3300031446	Forest Soil	MNRSAQDGEWSSPHYGGEGDWVPLRRTKVFAGDTVGKSVSNSGRPGIVRRAGMAGIVRHSQTKGRATANANPSLEPSSVGGGYKR
Ga0318516_105875702	3300031543	Soil	MNRSAKDGARSSPHYGDEGAWVPLRRTKVCAGDTVGKNVSDSGRPGIVRGQGMAGIVRHSQTKGRATGNAKPSLKPATVGVDI
Ga0318560_107194972	3300031682	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPARGR
Ga0306917_109945532	3300031719	Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPARGRCGYKR
Ga0306918_110032681	3300031744	Soil	MNRSAEDGAWSSANYGDEGAWVPLRRTKVCADDTVGKGVSDSGRPGIVRGQGMAGIVRHSQTKGRATGNVKPSLKPATVGVD
Ga0306919_106210973	3300031879	Soil	MNRSAKDGARSSPHYGDDGAWVPLRRTKVCAGDTVGKNVSDSGRPGIVRRQGMAGIVRPSQTKGRATGNAKPSLKPARGRCGYKRKRNSGRCGVRGRIG
Ga0318562_101567034	3300032008	Soil	MNRSAKDGAWSSPHYGDEGAWVPLRRTKVCADDTVGKSVSDSGRPGIVRRQGMAGMVRHSQTKGRATGNAKPSLKPANGRCGYK
Ga0318559_102233501	3300032039	Soil	LEENHRVGINGSNPDDEPVAKDGARSSPHYGDDGAWVPLRRTKVCAGDTVGKNVSDSGRPGIVRRQGMAGIVRPSQTKGRATGNAKPSLKPARGRCGYKRKRNSGRCGVRGRIGARYS
Ga0306924_115786441	3300032076	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAADTVGKNVSDSGRPGIVRRQGMAGILRHSQTKGRATGN
Ga0315742_130366681	3300032756	Forest Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKNVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSGRCGARSR
Ga0334934_040518_434_664	3300034006	Biocrust	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSASDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPP
Ga0372943_0769065_383_637	3300034268	Soil	MNRSAEDGEWSSPHYGGEGVWVPPRRTKVCADDTVGKSVSDSGRPGIVQGAGMAGIVRHSQTKGRATVNAKPGLEPPGGRCGYKR
Ga0334914_056521_2_250	3300034393	Sub-Biocrust Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDTGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADI
Ga0314783_047401_3_239	3300034662	Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMV
Ga0314783_098412_280_621	3300034662	Soil	MNRSAKDGAWSSPHYGGEGTWVPLRRTKVFAGDTVGKSVSDSGRPGIVQRRGMAGIVRHSQTKGRATGNAKPSLKPSDGRCGYKRERNSGQRDVRSRIGARYSRTGSEQKAPDH
Ga0314801_161872_256_549	3300034676	Soil	MNRSAKDGEWSSPHYRGEGIWVPPRRTKVCAGDTVGKSVSNSGRPGIVQGAGMAGIVRHSQTKGRATGNAKPGLEPPGGRCGYKRKRSSGRCGARSRI
Ga0314801_186506_310_522	3300034676	Soil	MNRSAKDGAWSSPHYGGEGTWVPLRRTKVFAGDTVGKSVSDSGRPGIVQRRGMAGIVRHSQTKGRATGNAK
Ga0314802_016799_445_711	3300034677	Soil	MNRSAKDGEWSSPHYRGEGIWVPPRRTKVCAGDTVGKSASNPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEVP
Ga0370541_057467_1_297	3300034680	Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSASDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVPGVGSG
Ga0334945_094968_287_550	3300034779	Sub-Biocrust Soil	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEG
Ga0373959_0127788_353_625	3300034820	Rhizosphere Soil	MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAGDTVGKSVSDSGRPGIVRRQGMAGIVRHSQTKGRATGNAKPSLKPVRGRCGYKRKRNSDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086219

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences