Metagenome / Metatranscriptome Family F086229

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086229
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	62 residues
Representative Sequence	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVLLVSIL
Number of Associated Samples	76
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.03 %
% of genes near scaffold ends (potentially truncated)	89.19 %
% of genes from short scaffolds (< 2000 bps)	88.29 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.955 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.234 % of family members)
Environment Ontology (ENVO)	Unclassified (45.946 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.261 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.45% β-sheet: 0.00% Coil/Unstructured: 50.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13590	DUF4136	21.62
PF10677	DUF2490	5.41
PF01740	STAS	3.60
PF00196	GerE	1.80
PF13432	TPR_16	1.80
PF13358	DDE_3	1.80
PF01925	TauE	0.90
PF04338	DUF481	0.90
PF11412	DsbC	0.90
PF01464	SLT	0.90
PF02954	HTH_8	0.90
PF01695	IstB_IS21	0.90
PF14023	DUF4239	0.90
PF05036	SPOR	0.90
PF13683	rve_3	0.90
PF02012	BNR	0.90
PF13231	PMT_2	0.90
PF01433	Peptidase_M1	0.90
PF01797	Y1_Tnp	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.90
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.90
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.90
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.90
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.95 %
Unclassified	root	N/A	45.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.95 %
Unclassified	root	N/A	45.05 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.95 %
Unclassified	root	N/A	45.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.05 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.05 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15.32 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.05 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	15.32 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	1.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.05 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15.32 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	1.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.05 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	2.70 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	1.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.05 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	1.80 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	1.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.05 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1.80 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	1.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Acidobacteria bacterium 13_1_40CM_3_56_11	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000729\|JGI12371J11900_1015950	Not Available	501	Open in IMG/M
3300000905\|JGI12406J12870_102537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	733	Open in IMG/M
3300004092\|Ga0062389_101426262	Not Available	877	Open in IMG/M
3300004092\|Ga0062389_101658963	Not Available	821	Open in IMG/M
3300005295\|Ga0065707_11019315	Not Available	534	Open in IMG/M
3300005332\|Ga0066388_103413572	Not Available	811	Open in IMG/M
3300005332\|Ga0066388_104013854	Not Available	750	Open in IMG/M
3300005363\|Ga0008090_15531660	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005526\|Ga0073909_10452605	Not Available	614	Open in IMG/M
3300005764\|Ga0066903_105784229	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005764\|Ga0066903_107522527	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	562	Open in IMG/M
3300006163\|Ga0070715_10412095	Not Available	754	Open in IMG/M
3300009792\|Ga0126374_11821331	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300010358\|Ga0126370_10585301	Not Available	960	Open in IMG/M
3300010361\|Ga0126378_11239077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	843	Open in IMG/M
3300010361\|Ga0126378_12570724	Not Available	582	Open in IMG/M
3300010361\|Ga0126378_13312555	Not Available	512	Open in IMG/M
3300010366\|Ga0126379_10799746	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1042	Open in IMG/M
3300010366\|Ga0126379_13020493	Not Available	563	Open in IMG/M
3300010376\|Ga0126381_100726786	All Organisms → cellular organisms → Bacteria → Acidobacteria	1421	Open in IMG/M
3300010376\|Ga0126381_102675138	Not Available	713	Open in IMG/M
3300010376\|Ga0126381_104889598	Not Available	515	Open in IMG/M
3300010398\|Ga0126383_11031846	Not Available	911	Open in IMG/M
3300010398\|Ga0126383_11293289	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300010398\|Ga0126383_12066864	Not Available	657	Open in IMG/M
3300012957\|Ga0164303_10296038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_3_56_11	951	Open in IMG/M
3300012971\|Ga0126369_10027538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4638	Open in IMG/M
3300012971\|Ga0126369_10471729	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300015371\|Ga0132258_10239867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4423	Open in IMG/M
3300016270\|Ga0182036_11142907	Not Available	646	Open in IMG/M
3300016270\|Ga0182036_11581083	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300016294\|Ga0182041_10495679	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300016294\|Ga0182041_11808025	Not Available	567	Open in IMG/M
3300016319\|Ga0182033_10550292	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300016341\|Ga0182035_10828370	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300016404\|Ga0182037_10894108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	770	Open in IMG/M
3300020580\|Ga0210403_10852156	Not Available	721	Open in IMG/M
3300020581\|Ga0210399_10691808	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	839	Open in IMG/M
3300021401\|Ga0210393_10673087	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	844	Open in IMG/M
3300021407\|Ga0210383_11101591	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300021407\|Ga0210383_11354974	Not Available	593	Open in IMG/M
3300021476\|Ga0187846_10055967	All Organisms → cellular organisms → Bacteria → Acidobacteria	1736	Open in IMG/M
3300021478\|Ga0210402_10385167	Not Available	1302	Open in IMG/M
3300021560\|Ga0126371_12698371	Not Available	602	Open in IMG/M
3300021560\|Ga0126371_13032077	Not Available	569	Open in IMG/M
3300021560\|Ga0126371_13080784	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300021560\|Ga0126371_13445010	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300021560\|Ga0126371_13755201	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300025906\|Ga0207699_10504160	Not Available	874	Open in IMG/M
3300026692\|Ga0207725_102394	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	933	Open in IMG/M
3300026783\|Ga0207778_106320	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	866	Open in IMG/M
3300026809\|Ga0207820_108331	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	815	Open in IMG/M
3300026833\|Ga0207728_107981	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1015	Open in IMG/M
3300026983\|Ga0207856_1041516	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	623	Open in IMG/M
3300027460\|Ga0207506_1019067	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031057\|Ga0170834_105173290	Not Available	663	Open in IMG/M
3300031090\|Ga0265760_10229120	Not Available	636	Open in IMG/M
3300031122\|Ga0170822_14442935	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	640	Open in IMG/M
3300031231\|Ga0170824_114516654	Not Available	838	Open in IMG/M
3300031231\|Ga0170824_114521132	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	781	Open in IMG/M
3300031469\|Ga0170819_14559764	Not Available	941	Open in IMG/M
3300031543\|Ga0318516_10451860	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300031572\|Ga0318515_10685142	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300031736\|Ga0318501_10726785	Not Available	548	Open in IMG/M
3300031744\|Ga0306918_10015512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4469	Open in IMG/M
3300031744\|Ga0306918_10989753	Not Available	653	Open in IMG/M
3300031744\|Ga0306918_11362365	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300031768\|Ga0318509_10416098	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300031793\|Ga0318548_10132869	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300031820\|Ga0307473_11147100	Not Available	575	Open in IMG/M
3300031833\|Ga0310917_10092442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1935	Open in IMG/M
3300031833\|Ga0310917_10917606	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300031879\|Ga0306919_10562885	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300031879\|Ga0306919_10676184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	795	Open in IMG/M
3300031890\|Ga0306925_11185555	Not Available	766	Open in IMG/M
3300031890\|Ga0306925_12066871	Not Available	535	Open in IMG/M
3300031897\|Ga0318520_10372200	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300031912\|Ga0306921_10014367	All Organisms → cellular organisms → Bacteria	8551	Open in IMG/M
3300031912\|Ga0306921_11942625	Not Available	628	Open in IMG/M
3300031942\|Ga0310916_10165806	All Organisms → cellular organisms → Bacteria	1832	Open in IMG/M
3300031942\|Ga0310916_10521772	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300031942\|Ga0310916_11368875	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300031945\|Ga0310913_10156747	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300031946\|Ga0310910_11426661	Not Available	532	Open in IMG/M
3300031954\|Ga0306926_10428930	All Organisms → cellular organisms → Bacteria → Acidobacteria	1630	Open in IMG/M
3300031981\|Ga0318531_10060497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	1623	Open in IMG/M
3300032001\|Ga0306922_11428519	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300032035\|Ga0310911_10046350	All Organisms → cellular organisms → Bacteria	2246	Open in IMG/M
3300032039\|Ga0318559_10527628	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300032042\|Ga0318545_10165681	Not Available	787	Open in IMG/M
3300032044\|Ga0318558_10700593	Not Available	506	Open in IMG/M
3300032054\|Ga0318570_10553570	Not Available	525	Open in IMG/M
3300032059\|Ga0318533_10182544	All Organisms → cellular organisms → Bacteria → Acidobacteria	1496	Open in IMG/M
3300032059\|Ga0318533_11272153	Not Available	538	Open in IMG/M
3300032091\|Ga0318577_10433024	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300032091\|Ga0318577_10637552	Not Available	506	Open in IMG/M
3300032094\|Ga0318540_10116849	Not Available	1264	Open in IMG/M
3300032094\|Ga0318540_10360015	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300032094\|Ga0318540_10374277	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	688	Open in IMG/M
3300032261\|Ga0306920_100794173	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300033289\|Ga0310914_10204073	All Organisms → cellular organisms → Bacteria	1765	Open in IMG/M
3300033289\|Ga0310914_10324371	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300033290\|Ga0318519_10363031	Not Available	858	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.10%
Host-Associated	Host-Associated	0.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.50%
Aquatic	Environmental → Aquatic	3.60%
Plants	Host-Associated → Plants	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.59%
Freshwater	Environmental → Aquatic → Freshwater	2.70%
Sediment	Environmental → Aquatic → Sediment	0.90%
Cave	Environmental → Terrestrial → Cave	0.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.88%
Loam	Environmental → Terrestrial → Soil → Loam	11.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.56%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.90%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000729	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35	Environmental	Open in IMG/M
3300000905	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026692	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 38 (SPAdes)	Environmental	Open in IMG/M
3300026783	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 36 (SPAdes)	Environmental	Open in IMG/M
3300026809	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47 (SPAdes)	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300026983	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 21 (SPAdes)	Environmental	Open in IMG/M
3300027460	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-C (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12371J11900_10159501	3300000729	Tropical Forest Soil	MESRPNRSSPKPTNLHPWRTAILVCFVAILSYSAARVGTMLAMGPQADWPLWLGNVLLASILLLT
JGI12406J12870_1025372	3300000905	Tropical Forest Soil	MESRPNRSSPKPTNLHPWRTAILVCFVAILSYSAARVGTMLAMGPQADWPLWL
Ga0062385_104487852	3300004080	Bog Forest Soil	METGPNRSPWSVANLNSPWHTASLVCFVAILSYWVTKLGAILSIGPHAAGPL
Ga0062389_1014262622	3300004092	Bog Forest Soil	MAADPNRSPWNIANLNSPFRTVILVCFVFILSYSAAKLGEMLITGPQANWPLWLGNV
Ga0062389_1016589631	3300004092	Bog Forest Soil	METEPNRSSWTAANLNSPWRTAILACFVFILSYCAAKLGGMLITGPHADWPLWLGNVLLVSILLLVPR
Ga0065707_110193151	3300005295	Switchgrass Rhizosphere	METEPNRSSWTAANLNSPWRTAILACFVFILSYCAAKLGQMLIIGPQADWPLWLGNVLLVSI
Ga0066388_1034135722	3300005332	Tropical Forest Soil	MKAGPEPSFWNLANVNSPLRTATLACFVALLSYYAAKLGGTLIVGPQADWPLWLGNVLLVSILLLVP
Ga0066388_1040138541	3300005332	Tropical Forest Soil	METKSNRLSWKPNLNSLRTGTLVCFVAILSYCAARVGAMLAMGPQADWPLWLGNVL
Ga0008090_155316601	3300005363	Tropical Rainforest Soil	METGPNRSSPKPVDLNSWRTVILVCFVAVLSYCAARVGAMLAMGPQADWPLWLGNVLLASILLLTPRKTWPMLI
Ga0073909_104526052	3300005526	Surface Soil	METEPNRSSWTAANLNSPWHTAILACFVFILSYCAAKLGHMLIIGPQADWPLWLGNVLLVSILLL
Ga0066903_1057842292	3300005764	Tropical Forest Soil	MESKSNSLSPKPNLNSLRTGTLVCFVAILSYCAARVGAMLAMGPQADWPLWLGN
Ga0066903_1075225271	3300005764	Tropical Forest Soil	MEIGNDRSSPKPANLNSWRTVILVCFVAILSYCAARVGAMLAMGPQADWPLW
Ga0075028_1006496332	3300006050	Watersheds	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQALAALAR*
Ga0070715_104120952	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MEKEPNRSSWSVANLDSPWHTVVLVCFVAVLSYCAAQLGGMLTIGPQADWPLWL
Ga0126374_118213311	3300009792	Tropical Forest Soil	METRPNRSSPKPVDLNSWRTVILVCFVAVLSYCAARVGAMLAMGPQADWPLWLGNVLLASILLLTPRKT
Ga0126370_105853011	3300010358	Tropical Forest Soil	METIPNRSSWSFANLNSPWHVVILACFVAILCYSATKLGGMLAIGPQSDWPLWL
Ga0126378_112390773	3300010361	Tropical Forest Soil	METGPNRSCPKPVDLISWRTVILVCFVAVLSYCAARVGAMLAMGPQADWPLWLGNVLLASILLLTPRKTW
Ga0126378_125707242	3300010361	Tropical Forest Soil	METEPNRSSWSAANLDFPWHKVILVCLVAILSYWSLELGGILTIGLQAAWPLWLG
Ga0126378_133125551	3300010361	Tropical Forest Soil	METGPNRSSWSVTNLNSPWHTVILVCFVAILSYSSLKLGALLTIGPEAAWPLW
Ga0126379_107997461	3300010366	Tropical Forest Soil	METGPNRSCPKPVDLISWRTVILVCFVAVLSYCAARVGAMLAMGPQADWPLWLGNV
Ga0126379_130204931	3300010366	Tropical Forest Soil	METGPNRSSWSVANLNSRWHTVIVVCFVAILSYYSLKLGEVLTLGPQAAWPLWLGNVFLASLLLPVQRRNW
Ga0126381_1007267862	3300010376	Tropical Forest Soil	METGPNRSSWSENLNSPWHTVILACFVAILSYCLIKVGEVLTIGPQAAWP
Ga0126381_1026751382	3300010376	Tropical Forest Soil	MESGPNRSSPKPANLNFWRTVVLVCFVAIVSYCAARVGAMLAMGPQADWPLWLGN
Ga0126381_1048895981	3300010376	Tropical Forest Soil	MKAGPEPSFWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNV
Ga0126383_110318461	3300010398	Tropical Forest Soil	METEPNRSSWTAANLNSPWRTATLACFVFILSYYAAKLGEMLIIAPQADWPLWLGNVL
Ga0126383_112932892	3300010398	Tropical Forest Soil	MEAGPNRSSPKPANLNSWRTVVLVCFVAIVSYCAARVGAMLAMGPQADWPLWLGNVLLAS
Ga0126383_120668641	3300010398	Tropical Forest Soil	MEAKPNRSPWSVTNLNSSWHKAVLVCFVAILSYGAAKLGGTLILGPQADWPLW
Ga0164303_102960382	3300012957	Soil	METEPNRPSWTAANLNSPWRTAILACFVFILSYCAAKLGQMLIIGPQADWPLWLGNVLLVSILL
Ga0126369_100275388	3300012971	Tropical Forest Soil	MESGPNRPSWNVAKLNSASRIAILTCFVAILSYFSAKLAGMLIAGPQLDWPLWLGNVFL
Ga0126369_104717293	3300012971	Tropical Forest Soil	METGPNRSCPKPVDLISWRTVILVCFVAVLSYCAARVGAMLAMGPQADWPLWLGNVL
Ga0126369_130647612	3300012971	Tropical Forest Soil	METGPNRSSWSENLNSPWHTVILACFVAILSYCLIKVGEVLTIGPQAA
Ga0132258_102398671	3300015371	Arabidopsis Rhizosphere	METGRNRFPWNVTNLSFSWHKVILVCFVAILSYGAAKLGGTLTIDPQAEWPLWLGNAFLVSILLL
Ga0182036_111429071	3300016270	Soil	METVPNRSSLSLVNLNSPWHTVVLVCFVAILSYSSLKLGALLTLGPQAAWPLWLGNVFL
Ga0182036_115810831	3300016270	Soil	METGPSRSSGSVANLNSPWHTAILVCLVAVLSYCSLKLGAVLTLGPEAAWPLWLGNVFLASLLL
Ga0182041_104956793	3300016294	Soil	MKPGSKPSSWNLANVNSPLRAATLVCFVAILSYCGARVGAMLAMGPQADWPLWLGNVLLVSILLLTPRK
Ga0182041_118080251	3300016294	Soil	METVPNRSSLSLVNLNSPWHTVVLVCLVAILSYGSLKLGALLTLGPQAAWP
Ga0182033_105502923	3300016319	Soil	METGPNRSSWSLANLNSPRHTAILVCFVAILSYGSLKLGALLTLGPQAAWPLWLGNVFLA
Ga0182035_108283701	3300016341	Soil	METGPNRSSPKAANLNSWRTLILVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASILL
Ga0182040_103836271	3300016387	Soil	METGPSRSAWSGNLNSPWHTVILACFVAILSYCLIKLGGVLTVGPQAAWPLWLGNVFLASVLLLVPRRVWPILM
Ga0182037_108941081	3300016404	Soil	MEAGSNRSSPKSANLNSWRTVVLVCFVAILSYCAARVGAMLAMGPQADWPLWLGNVLLASILLLTPRKT
Ga0210403_108521562	3300020580	Soil	METEPNRSSWSIANPNSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVFLT
Ga0210399_106918081	3300020581	Soil	MEKEPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAQLGGMLTIGPQADWPLWLGNVLL
Ga0210393_106730872	3300021401	Soil	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVLLVSILLL
Ga0210383_111015912	3300021407	Soil	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLG
Ga0210383_113549741	3300021407	Soil	METEPNRSSGSIANPISPWHTVILVCFVAILSYCAARLGGMLTIGPQADWPLWLGNVFLASMLLLVPRR
Ga0210390_102609481	3300021474	Soil	MASGSDRSSWSVANLNSPWHTGILVCFVAILSYCLIKLGAVLTIDPQGPWPLWLGNVFLASILLLVPRRIWPIQM
Ga0210392_107110371	3300021475	Soil	MASGSDRSSWSVANLNSPWHTGILVCFVAILSYCLIKLGAVLTIDPQGP
Ga0187846_100559672	3300021476	Biofilm	METRPNRSSWTVANLNSPWHTMILVCFVAVLSYCSLRLGAVLTLGPEAAWPLWLG
Ga0210402_103851673	3300021478	Soil	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVLLVSILLLVPRR
Ga0126371_126983712	3300021560	Tropical Forest Soil	MKAGPKPSSWNLADVNSWRTVMLVCFVAILSYWAARVGAMLAMGPRADWPLWPGNA
Ga0126371_130320771	3300021560	Tropical Forest Soil	MKAGPEPSFWNLANLNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLG
Ga0126371_130807841	3300021560	Tropical Forest Soil	METVPNRSSLSLVNLNSPWHTVILVCFVAILSYSSLKLGALLAMGPQAAWPLWLGNVFLASILLLVPRRL
Ga0126371_134450101	3300021560	Tropical Forest Soil	MEAGPNRSSPKPANLNSWRTVVLVCFVAIVSYCAARVGAMLAMGPQADWPLWLGNVLLASILLLTPRKTWP
Ga0126371_137552011	3300021560	Tropical Forest Soil	MQTESNLSSWSAAHPNSPWRTVILVCVAAILSYCAAKLGGMLTIGQHAEWPLWLGNAFLVSILLL
Ga0207699_105041601	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVL
Ga0207725_1023942	3300026692	Tropical Forest Soil	MESRPNRSSPKPTNLHPWRTAILVCFVAILSYSAARVGTMLAMGPQADWPLWLG
Ga0207778_1063201	3300026783	Tropical Forest Soil	MESRPNRSSPKPTNLHPWRTAILVCFVAILSYSAARVGTMLAMGPQADWPLWLGNVLL
Ga0207820_1083312	3300026809	Tropical Forest Soil	MESRPNRSSPKPTNLHPWRTAILVCFVAILSYSAARVGTMLAMGPQADWPL
Ga0207728_1079811	3300026833	Tropical Forest Soil	MESRPNRSSPKPTNLHPWRTAILVCFVAILSYSAARVGTMLAMGPQADWPLWLGNVLLASILLLTPRKIWPMLIVAAFLA
Ga0207856_10415162	3300026983	Tropical Forest Soil	MESRPNRSSPKPTNLHPWRTAILVCFVAILSYSAARVGTMLAMGPQADWPLWLGNVLLASILLLTPRKTWPML
Ga0207506_10190671	3300027460	Soil	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVLLVSIL
Ga0170834_1051732901	3300031057	Forest Soil	METEPNRSSWSIANPNSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVFL
Ga0265760_102291201	3300031090	Soil	MEKGPNRSAWSVANLNSPRHTVILVCFVAILSYCAAKLGGMLIIGPQADWPLWLGNV
Ga0170822_144429351	3300031122	Forest Soil	MEKGHNRSSWSVANLDSPWHAVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVLLV
Ga0170824_1145166541	3300031231	Forest Soil	METEPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVFLTSM
Ga0170824_1145211321	3300031231	Forest Soil	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVFLTSM
Ga0170819_145597642	3300031469	Forest Soil	METEPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPLWLGNVFLTSMLLLVPRRMWP
Ga0318516_104518601	3300031543	Soil	METGPNRSSPKAANLNSWRTLILVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASILLL
Ga0318515_106851422	3300031572	Soil	METGPNRSSPKPANLNSWRTRILVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASILLLTPRKIWPM
Ga0318501_107267851	3300031736	Soil	MKAGPEPSFWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNVL
Ga0306918_100155125	3300031744	Soil	METGPNRSSPKAANLNSWRTLILVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASILLLT
Ga0306918_109897531	3300031744	Soil	MKAGPEPSFWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNVLLVSI
Ga0306918_113623651	3300031744	Soil	METGPNRSSPKPANLNSWRTLIQVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASILLLT
Ga0318509_104160981	3300031768	Soil	METGPNRSSPKPANLNSWRTRILVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASIL
Ga0318548_101328691	3300031793	Soil	METGPNRSSPKPANLNSWRTLIQVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASILLL
Ga0307473_111471001	3300031820	Hardwood Forest Soil	MEKGPNRSSWSVANLDSPWHTVVLVCFVAILSYCAAKLGGMLTIGPQADWPL
Ga0310917_100924421	3300031833	Soil	MKVGPEPSFWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNVLLVSLLLLAPGRIWPI
Ga0310917_109176062	3300031833	Soil	METGPSRSSGSVANLNSPWHTAILVCLVAVLSYCSLKLGAVLTLGPEAARPLWLG
Ga0306919_103412881	3300031879	Soil	MELSPYANLSFSWHKVILVCFVAILSYGAAKLGGTLIIGPQAEWPLWLGNAFLVSILLLVPRRMWPILIA
Ga0306919_105628852	3300031879	Soil	METGPNRSSPKAANLNSWRTLILVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASILLLTPRKIWPML
Ga0306919_106761841	3300031879	Soil	MKAGPEPSSWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNVLLQVSA
Ga0306925_111855551	3300031890	Soil	MKAGPEPSSWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGN
Ga0306925_120668711	3300031890	Soil	MKAGPESSPWNLANANSPLRTATLVCFVALLSYYAAKLGGALIVGPQADWPLWLGNVLLVSILLLAPQ
Ga0318520_103722001	3300031897	Soil	METGPNRSSPKPVDLNSWRTVILVCFVAVLSYCAARVGAMLAMGPQADWPLWLGNVLLASILLLTPRKTWPMLIVAAFAAFAVND
Ga0306921_1001436718	3300031912	Soil	METGPNRSSPKPANLNSWRTLILVCFVAILSYCAARVGTMLEAGPHADWPLWLGNVLLASILLLTPRKIWPMLIVAAFA
Ga0306921_119426251	3300031912	Soil	MKTGRNRFPWNVTNLSFSWHKVILVCFVAILSYGAAKLGGTLIIGPQAEWPLWLGNAFLV
Ga0310916_101658061	3300031942	Soil	MKAGPEPSSWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNVLLVSILLLVPRRI
Ga0310916_105217721	3300031942	Soil	METGPNRSSPKAANLNSWRTLILVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLLASILLLTPRKIWPMLVVAAFAAF
Ga0310916_113688752	3300031942	Soil	METGPNRSSPKPANLNSWRTLIQVCFVAILSYCAARVGAILAMGPQADWPLWLGNVLL
Ga0310913_101567471	3300031945	Soil	MKAGPEPSFWNLANVNSPLRTATLACFVAVLSYYAARLGGTLIVGPQADWPLWLGNVLLVSI
Ga0310910_114266611	3300031946	Soil	MEAGPNRSSWTVANLNSPWHTLILVCFVAILSYCSLKLGALLAIGPQAAWPLWLGNAFLVSV
Ga0306926_104289301	3300031954	Soil	MKTGNRFHESLTNLHFSWREVILVCFVAILSYGAAKLGGTLIIGQQPEWPLWLGNAFLASILLLVPRR
Ga0318531_100604973	3300031981	Soil	MKAGPESSPWNLANANSPLRTATLVCFVALLSYYAAKLGGALIVGPQADWPLWLGNVLLQVSA
Ga0306922_114285191	3300032001	Soil	METGPNRSSPKPANLNSWRTLIQVCFVAILSYCAARVGAILAMGPQADWPLWLGNV
Ga0310911_100463504	3300032035	Soil	MKAGPEPSFWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNVLLQVSA
Ga0318559_105276282	3300032039	Soil	METGPNRSSPKAANLNSWRTLILVCFVAILSYCAARVGTMLEAGPHADWPLWLGNVLLASILLLTPRKIWPMLIVAA
Ga0318545_101656811	3300032042	Soil	MKAGPEPSFWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNVLLVSILL
Ga0318558_107005931	3300032044	Soil	MKAGPESSSWNLANVNSPLRTATLACFVAVLSYYAAKLGGALIVGPQADWPLWLGNVLLASILL
Ga0318570_105535701	3300032054	Soil	MKVGPEPSFWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNV
Ga0318533_101825441	3300032059	Soil	METGPNRSSWTVASLNSSWHTVVLVCLVAILSYGSLKLGALLTLGPQAAWPLWLGNVFLASVLLLVPRR
Ga0318533_112721532	3300032059	Soil	METGPNRSSRTNLNPPWRTAVLVCFVAILSYWAARLGGMLITGPQTEWPLWLGNAFLVSV
Ga0318577_104330242	3300032091	Soil	MEAGSNRSSPKSANLNSWRTVVLVCFVAILSYCAARVGAMLAMGPQADWPLWLGNVLLASILLLTPRKTWPMLIAAAFVA
Ga0318577_106375522	3300032091	Soil	MESRPNRSSPKPTNLHPWRTVILVCFVAILSYCAARVGAMLAMGPQADWPLWLGNVLLASILLLTPRKTWPMLI
Ga0318540_101168491	3300032094	Soil	MKAGPEPSFWNLANVNSPLRTATLACFVAVLSYYAAKLGGTLIVGPQADWPLWLGNVLLVSILLLVPRRIWPI
Ga0318540_103600151	3300032094	Soil	MKPGSKPSSWNLANVNSPLRAATLVCFVAILSYCGARVGAMLAMGPQADWPLWLGNVLLVSILL
Ga0318540_103742772	3300032094	Soil	MESRPNRSSPKPTNLHPWRTVILVCFVAILSYCAARVGAMLAMGPQADWPLWLGNVLLASILLL
Ga0306920_1007941731	3300032261	Soil	METGTNRSSWSVANLNSPWHTVVLVCFVAILSYSSLKLGALLTLGPQAAWPLWLGNVFLASVLLLV
Ga0310914_102040733	3300033289	Soil	METGPNRSSPKAANLNSWRTLILVCFVAILSYCAARVGAILAMGPQADWPLWLGN
Ga0310914_103243714	3300033289	Soil	METGPNRSSPKPANLNSWRTLILVCFVAILSYCAARVGAILAMGPQADWPLWLGN
Ga0310914_111371941	3300033289	Soil	MEKGPNRSSRSAANLDSPWHSVVLACFVAVLSYCAAKLGGMLTIGPQADWPLWLGNVLLVSVLLLVPRRMWPI
Ga0318519_103630312	3300033290	Soil	MEAGPNRSSWTVANLNSPWHTLILVCFVAILSYCSLKLGALLAIGPQAAWPLWLGNAFLVSVLLLVPRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086229

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences