Metagenome / Metatranscriptome Family F086245

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F086245
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	64 residues
Representative Sequence	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN
Number of Associated Samples	77
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.31 %
% of genes near scaffold ends (potentially truncated)	29.73 %
% of genes from short scaffolds (< 2000 bps)	92.79 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (72.072 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.820 % of family members)
Environment Ontology (ENVO)	Unclassified (29.730 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.072 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.22% β-sheet: 28.26% Coil/Unstructured: 56.52%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
d.73.1.1: RuBisCO, small subunit	d4f0hb_	4f0h	0.72539
d.73.1.1: RuBisCO, small subunit	d1svdm1	1svd	0.7051
d.73.1.1: RuBisCO, small subunit	d1wdds_	1wdd	0.70174
b.1.1.1: V set domains (antibody variable domain-like)	d1smoa_	1smo	0.63297
d.58.29.0: automated matches	d4p2fa_	4p2f	0.63024

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF10108	DNA_pol_B_exo2	16.22
PF14485	DUF4431	5.41
PF03401	TctC	2.70
PF01068	DNA_ligase_A_M	1.80
PF13391	HNH_2	0.90
PF01027	Bax1-I	0.90
PF00296	Bac_luciferase	0.90
PF00848	Ring_hydroxyl_A	0.90
PF02586	SRAP	0.90
PF12849	PBP_like_2	0.90
PF00216	Bac_DNA_binding	0.90
PF13358	DDE_3	0.90
PF09994	DUF2235	0.90
PF13156	Mrr_cat_2	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.70
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.80
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.80
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.80
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.90
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.90
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.07 %
Unclassified	root	N/A	27.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.07 %
Unclassified	root	N/A	27.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.07 %
Unclassified	root	N/A	27.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.35 %
Unclassified	root	N/A	27.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.14 %
Unclassified	root	N/A	27.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	13.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Blastochloridaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae	0.90 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.90 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.61 %
Tardiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	0.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.90 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	0.90 %
Blastochloris	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.93 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.80 %
unclassified Tardiphaga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → unclassified Tardiphaga	0.90 %
Microvirga arabica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	0.90 %
Blastochloris viridis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris viridis	0.90 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.93 %
Bradyrhizobium sp. C9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C9	1.80 %
Tardiphaga sp. vice278	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → unclassified Tardiphaga → Tardiphaga sp. vice278	0.90 %
Microvirga arabica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	0.90 %
Blastochloris viridis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris viridis	0.90 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02QITX9	Not Available	513	Open in IMG/M
3300001081\|JGI12662J13196_1008597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	830	Open in IMG/M
3300001593\|JGI12635J15846_10688390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	590	Open in IMG/M
3300002245\|JGIcombinedJ26739_100222705	All Organisms → cellular organisms → Bacteria	1778	Open in IMG/M
3300002245\|JGIcombinedJ26739_100320632	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300002245\|JGIcombinedJ26739_100430182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C9	1198	Open in IMG/M
3300002245\|JGIcombinedJ26739_100525640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1060	Open in IMG/M
3300002245\|JGIcombinedJ26739_100826696	All Organisms → cellular organisms → Bacteria → Proteobacteria	807	Open in IMG/M
3300002245\|JGIcombinedJ26739_101115973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300003505\|JGIcombinedJ51221_10474750	Not Available	505	Open in IMG/M
3300004152\|Ga0062386_100080690	All Organisms → cellular organisms → Bacteria	2482	Open in IMG/M
3300004152\|Ga0062386_100102462	All Organisms → cellular organisms → Bacteria → Proteobacteria	2200	Open in IMG/M
3300004152\|Ga0062386_100672483	Not Available	849	Open in IMG/M
3300005332\|Ga0066388_101734124	Not Available	1107	Open in IMG/M
3300005332\|Ga0066388_101808279	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300005435\|Ga0070714_101064607	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300005437\|Ga0070710_10231190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1181	Open in IMG/M
3300005439\|Ga0070711_101500912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	588	Open in IMG/M
3300005764\|Ga0066903_100743461	All Organisms → cellular organisms → Bacteria → Proteobacteria	1740	Open in IMG/M
3300005764\|Ga0066903_101412067	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300006046\|Ga0066652_100516678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1112	Open in IMG/M
3300006163\|Ga0070715_10191869	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300006173\|Ga0070716_100666057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	791	Open in IMG/M
3300006173\|Ga0070716_100896261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	694	Open in IMG/M
3300006175\|Ga0070712_100127766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1922	Open in IMG/M
3300006175\|Ga0070712_100526429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	993	Open in IMG/M
3300009038\|Ga0099829_10292230	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300010339\|Ga0074046_10094461	Not Available	1933	Open in IMG/M
3300011003\|Ga0138514_100034476	Not Available	973	Open in IMG/M
3300011120\|Ga0150983_11840294	Not Available	515	Open in IMG/M
3300011270\|Ga0137391_11085072	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300011271\|Ga0137393_10831379	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300011271\|Ga0137393_11270764	Not Available	624	Open in IMG/M
3300012096\|Ga0137389_11110393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300012189\|Ga0137388_10672325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	962	Open in IMG/M
3300012200\|Ga0137382_10903441	Not Available	636	Open in IMG/M
3300012951\|Ga0164300_10300121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	840	Open in IMG/M
3300012958\|Ga0164299_10330212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	951	Open in IMG/M
3300012960\|Ga0164301_10121072	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300012961\|Ga0164302_10060246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1931	Open in IMG/M
3300012988\|Ga0164306_11920879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	515	Open in IMG/M
3300015371\|Ga0132258_10293175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3997	Open in IMG/M
3300015371\|Ga0132258_10527287	All Organisms → cellular organisms → Bacteria	2957	Open in IMG/M
3300015371\|Ga0132258_13032023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arabica	1163	Open in IMG/M
3300016294\|Ga0182041_10936100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris viridis	781	Open in IMG/M
3300016319\|Ga0182033_10461501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1085	Open in IMG/M
3300016341\|Ga0182035_11615694	Not Available	585	Open in IMG/M
3300016371\|Ga0182034_11472917	Not Available	596	Open in IMG/M
3300016387\|Ga0182040_10608826	Not Available	885	Open in IMG/M
3300016387\|Ga0182040_11164734	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300016404\|Ga0182037_11237340	Not Available	657	Open in IMG/M
3300016404\|Ga0182037_11674859	Not Available	567	Open in IMG/M
3300016404\|Ga0182037_11736151	Not Available	557	Open in IMG/M
3300016422\|Ga0182039_10991617	Not Available	753	Open in IMG/M
3300016422\|Ga0182039_11550974	Not Available	604	Open in IMG/M
3300016422\|Ga0182039_11977316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300016445\|Ga0182038_11735465	Not Available	563	Open in IMG/M
3300018081\|Ga0184625_10290568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	855	Open in IMG/M
3300019887\|Ga0193729_1072677	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300020579\|Ga0210407_10046673	All Organisms → cellular organisms → Bacteria → Proteobacteria	3228	Open in IMG/M
3300020579\|Ga0210407_11287830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	546	Open in IMG/M
3300020581\|Ga0210399_10487860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1025	Open in IMG/M
3300020581\|Ga0210399_11185324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	607	Open in IMG/M
3300020581\|Ga0210399_11285951	Not Available	577	Open in IMG/M
3300021168\|Ga0210406_10513096	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300021168\|Ga0210406_10721277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	766	Open in IMG/M
3300021171\|Ga0210405_10798026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300021178\|Ga0210408_10391429	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300021178\|Ga0210408_11493400	Not Available	506	Open in IMG/M
3300021403\|Ga0210397_11378837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	548	Open in IMG/M
3300021420\|Ga0210394_10680058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	903	Open in IMG/M
3300021432\|Ga0210384_11254679	Not Available	646	Open in IMG/M
3300021478\|Ga0210402_11958040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	512	Open in IMG/M
3300021479\|Ga0210410_10240728	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M
3300021479\|Ga0210410_11253858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300021559\|Ga0210409_10450378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1148	Open in IMG/M
3300021559\|Ga0210409_11324092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300022530\|Ga0242658_1174184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300025898\|Ga0207692_10259314	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300025915\|Ga0207693_10426558	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300025915\|Ga0207693_11482267	Not Available	501	Open in IMG/M
3300025939\|Ga0207665_10755734	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300027537\|Ga0209419_1050645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	806	Open in IMG/M
3300027583\|Ga0209527_1076026	Not Available	755	Open in IMG/M
3300027603\|Ga0209331_1134528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	592	Open in IMG/M
3300027610\|Ga0209528_1016772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1603	Open in IMG/M
3300027727\|Ga0209328_10215460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	578	Open in IMG/M
3300027812\|Ga0209656_10479399	Not Available	546	Open in IMG/M
3300027824\|Ga0209040_10048393	All Organisms → cellular organisms → Bacteria	2576	Open in IMG/M
3300027824\|Ga0209040_10181976	Not Available	1106	Open in IMG/M
3300027824\|Ga0209040_10389992	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300027846\|Ga0209180_10564097	Not Available	632	Open in IMG/M
3300027889\|Ga0209380_10672938	Not Available	596	Open in IMG/M
3300027910\|Ga0209583_10158504	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M
3300027915\|Ga0209069_10496246	Not Available	687	Open in IMG/M
3300028047\|Ga0209526_10046233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3063	Open in IMG/M
3300028047\|Ga0209526_10451798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	845	Open in IMG/M
3300028047\|Ga0209526_10494949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → unclassified Tardiphaga → Tardiphaga sp. vice278	798	Open in IMG/M
3300028047\|Ga0209526_10968573	Not Available	511	Open in IMG/M
3300028819\|Ga0307296_10576122	Not Available	616	Open in IMG/M
3300029636\|Ga0222749_10023034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2592	Open in IMG/M
3300029636\|Ga0222749_10716222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	548	Open in IMG/M
3300031231\|Ga0170824_122368842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1276	Open in IMG/M
3300031446\|Ga0170820_14359333	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300031910\|Ga0306923_10297045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C9	1846	Open in IMG/M
3300031910\|Ga0306923_11697768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300031912\|Ga0306921_11526508	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300031942\|Ga0310916_10444049	All Organisms → cellular organisms → Bacteria → Acidobacteria	1105	Open in IMG/M
3300031954\|Ga0306926_12974697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300032076\|Ga0306924_12494512	Not Available	519	Open in IMG/M
3300032261\|Ga0306920_103334859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	598	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.30%
Host-Associated	Host-Associated	2.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.29%
Aquatic	Environmental → Aquatic	9.01%
Plants	Host-Associated → Plants	2.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.39%
Freshwater	Environmental → Aquatic → Freshwater	6.31%
Sediment	Environmental → Aquatic → Sediment	2.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.70%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.05%
Loam	Environmental → Terrestrial → Soil → Loam	32.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	17.12%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.21%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.90%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_04842730	2070309004	Green-Waste Compost	MVEWGDLSFKVVRLEPAGQEVLARVGNILLARAAFDVAVSLYQTDEIELRQDSLSDLLV
JGI12662J13196_10085972	3300001081	Forest Soil	MTEWGELSFKVVRLEKAGQELLARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSSKRDPD*
JGI12635J15846_106883902	3300001593	Forest Soil	TEWGELSFKVVRLEKAGQELLARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSSKRDPD*
JGIcombinedJ26739_1002227051	3300002245	Forest Soil	MTEWGELSFKVVRLEKAGQEILARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSSKRDAD*
JGIcombinedJ26739_1003206322	3300002245	Forest Soil	MFPVCSYAQMVEWGELSFKVVRLEKAGQEVLARAGNILVARAAFDVSVSLFRPAEIELRQGSRVICSTKRDPN*
JGIcombinedJ26739_1004301822	3300002245	Forest Soil	MAEWGELSFKVVRLEQAGQEVLARAGNILVARAAFDMSVSLYQAAEIELRQGSRVICSSEQR*
JGIcombinedJ26739_1005256402	3300002245	Forest Soil	MAEWGELSFKVVRLEQAGQEVLARAGNILVARAAFDVSVSLYQAAEIELRQGSRVICSSKRDAR*
JGIcombinedJ26739_1008266962	3300002245	Forest Soil	VVRLEKAGQELLARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSSKRDPD*
JGIcombinedJ26739_1011159731	3300002245	Forest Soil	MAEWGELSFKVVRLEKAGQEVLARAGNIMVARAAYDVSVSLYQTDEIELRQGSRVICSSKRDPN*
JGIcombinedJ51221_104747501	3300003505	Forest Soil	LTLRSLYVLVRSMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVALYQSADIEMRQGSRVICSSKRHPD*
Ga0062386_1000806902	3300004152	Bog Forest Soil	MFSSPMVEWGELSFKVVRLEQAGQEVLARAGNLIIARAAFDVAVSLWQTAEIELRQGARVIYSSK*
Ga0062386_1001024623	3300004152	Bog Forest Soil	MVEWGELSFKVVRLEQVGQEVLARAGNFLVARAAFDTSVSLWPNAQIELRQGARVIHKSGDE*
Ga0062386_1006724831	3300004152	Bog Forest Soil	MVEWGELSFKIVRLEKAGQEVLARAGNFMVARAAFDTSVSLWPTAEIELCQGARVIHSSKQA*
Ga0066388_1017341244	3300005332	Tropical Forest Soil	MGEWGELSFKVVRLEQAGQEVLARAGNILVARAAFDVAVSLWGTEEIELRQGSRVIRSSKQH*
Ga0066388_1018082792	3300005332	Tropical Forest Soil	MGEWGELSFKVVRLEQAGQEVLARAGNILVARAAFVVAVSLWGSAEIELRQGSRVICSSKQN*
Ga0070714_1010646072	3300005435	Agricultural Soil	LTLRSRSVLMPRMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN*
Ga0070710_102311901	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPRMTEWGELPFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN*
Ga0070711_1015009122	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTEWGELSFKVVRLDKAGQEVLARAGNILVARAAFDVSVSLFRPAEIELRQGSRVICSSKPEVK*
Ga0066903_1007434613	3300005764	Tropical Forest Soil	MGEWGELSFKVVRLEQAGQEVLARASNILVARAAFDVAVSLWGTEEIELRQGSRVICSSKPI*
Ga0066903_1014120671	3300005764	Tropical Forest Soil	ELSFKVVRLEQAGQEVLARAGNILVARAAFDVAVSLWGTEEIELRQGSRVIRSSKQH*
Ga0066652_1005166784	3300006046	Soil	MGEWGELTFKVVRLEQAGQEVLARAGNVLVARAAYDMAVSLWGAADIELRQQSR
Ga0070715_101918691	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTEWGELSFKVVRLETAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN*
Ga0070716_1006660572	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LSFKVVRLDKAGQEVLARAGNILVARAAFDVSVSLFRPAEIELRQGSRVICSSKPHTS*
Ga0070716_1008962611	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MPRMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN*
Ga0070712_1001277662	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFPYPMTEWGELSFKVVRLEKAGQELLARAGNIMVARAAFDVSVSLFRPAEIELRQGSRVICSSKPEVK*
Ga0070712_1005264292	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN*
Ga0099829_102922302	3300009038	Vadose Zone Soil	MVEWGDLSFKVVRMEKAGQEVLARAGNFVVARAAFDVAVSLWETAEIELRQGARVI*
Ga0074046_100944614	3300010339	Bog Forest Soil	MVEWGELSFKIVRLEKAGQEVLARAGNFIVARAAFDTSVSLWPNAEIELRQGARVIHSS
Ga0138514_1000344761	3300011003	Soil	LTLRSLYVPVPLMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN*
Ga0150983_118402941	3300011120	Forest Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELQQGSRVICSSKRDPN*
Ga0137391_110850721	3300011270	Vadose Zone Soil	MVEWGDLSFKVVRMEKAGQEVLARAGNFMVARTAFDTSVSLWPAAEIELRQGARVIYSSKQD*
Ga0137393_108313792	3300011271	Vadose Zone Soil	MAEWGELSFKVVRLETGGQEVLARAGNFFVAEAAFDRSLELWPTAWIELRQESRVIRKANEG*
Ga0137393_112707642	3300011271	Vadose Zone Soil	MVEWGDLSFKVVRMEKAGQEVLARAGNFVVARVAFDVAVSLWETAEIELRQGARVI*
Ga0137389_111103932	3300012096	Vadose Zone Soil	MVEWGDLSFKVVRMEKAGQEVLARAGNFVVARVAFDVAVSLWQTAEIELRQGARVICSSKQV*
Ga0137388_106723252	3300012189	Vadose Zone Soil	MVEWGELSFKIVRLEKAGQEVLARAGNFMVARAAFDTSVSLWPNATIELRQGARVIHKSGEQELS*
Ga0137382_109034412	3300012200	Vadose Zone Soil	MEFGELTFKVVRLETAGQELLALAGNFMVARAAFDTSVSLWPTARFELRQGAQVIQSSHKDD*
Ga0164300_103001212	3300012951	Soil	MPGMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN*
Ga0164299_103302122	3300012958	Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVIC
Ga0164301_101210722	3300012960	Soil	MTEWGELSFKVIRLEKAGQAVLARAGNIMVARAEFDVSVSLYQSAEIELRQGSRVICSSKRDPN*
Ga0164302_100602464	3300012961	Soil	MPGMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGARVICSSKRDPMEIPASL
Ga0164306_119208791	3300012988	Soil	LRSRSVLMPRMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSASLYQSAEIELRQGSRVIWSSKRDPS*
Ga0132258_102931756	3300015371	Arabidopsis Rhizosphere	MVEWGELSFKVVRLEPAGQELLARAGNILVARAAFDTAVSLYQTDEIELRQGSRVICSNNRGTR*
Ga0132258_105272875	3300015371	Arabidopsis Rhizosphere	MTEWGELSFKVVRLESAGQEVLARAGNILVARAAFDVSVNLYQLHTIELRQGARVICSSKRDG*
Ga0132258_130320233	3300015371	Arabidopsis Rhizosphere	MGEWAELSFKVVRLEQTGQEVLARADNVLVARAAFDVAVSLWQSAEIEPRQGSRVICSSERT*
Ga0182041_109361001	3300016294	Soil	LSFKVVRIEPTTQEVLARAGNILIARAAFDVAVSLYQTDEIELRQGSRILRSNSGGTK
Ga0182033_104615012	3300016319	Soil	MIEWGELSFKVVRVEPTTQKVLARAGNILIARAAFDVAVSLYQTDEIELRQGSRILRSNSGGTK
Ga0182035_116156941	3300016341	Soil	MVEWGELSFKVVRVEPAGQELLAKAGNILIAKAAFDVAVSLYQTDEIELRQGIRVIRSSKRDLN
Ga0182034_114729171	3300016371	Soil	MIEYGDLSFKVLRLETTGQELLARASNILVARAAFDVAVSLYQTDEIELRQDAKVDYAPG
Ga0182040_106088261	3300016387	Soil	MVEYGELSFKVVRVEPTTQEVLARAGNILIARAAFDVAVSLYQTDEIELRQGSRILRSNTGETK
Ga0182040_111647342	3300016387	Soil	WGELSFKIVRLEQAGQEVLARASNFQIARAAFDTSVSLWPTAEIELRQGARVIYASKRN
Ga0182037_112373401	3300016404	Soil	MMPEWGELSFKVVRLESAGQEVLARAGNILVARAAFDVSVALYQTDKIELRQGSRVICSSKHDGYQLLQNKPWAT
Ga0182037_116748591	3300016404	Soil	MVEYGELSFKVVRIEPTTQEVLARAGNILIARAAFDVAVSLYQTDEIELRQGSRILRSNTGGTK
Ga0182037_117361512	3300016404	Soil	MVEYGELSFKVVRLELAAQEVLARASNIMVARAAYDVAVSLYQTDEIELRQGSRVIRSSK
Ga0182039_109916172	3300016422	Soil	MMPEWGELSFKVVRLESAGQEVLARAGNILVARAAFDVSVTLYQTDNIELRQGSRVICSSNKRDDPREKLTGLSK
Ga0182039_115509742	3300016422	Soil	MVEWGELSFKVVRVEPTAQEVLARAGNILIARAAFDVAVSLYQTDEIELKQGSRVIRSNSRGTK
Ga0182039_119773161	3300016422	Soil	YGELSFKVVRLETTGQEIIARAGNLLVARAAFDMSVSLYQSAVIELRQGSRVICSNTRGT
Ga0182038_117354651	3300016445	Soil	MGEWGELSFKVVRLEQAGQEVLARAGNILVARAAFDVAISLWGAAEIELRQGSRVIRSSKQNSG
Ga0184625_102905682	3300018081	Groundwater Sediment	MTEWGKLTFKVVRIETAGQELLALAGNFIVARAAFDTSVALWPTAWIELRQGARVLNKSNEQS
Ga0193729_10726773	3300019887	Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPD
Ga0210407_100466731	3300020579	Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSASLYQSAEIELRQGSRVICSSKRDY
Ga0210407_112878302	3300020579	Soil	SVLMPGMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELQQGSRVICSSKRDPN
Ga0210399_104878602	3300020581	Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSTKRDPN
Ga0210399_111853241	3300020581	Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVALYQSADIEMRQGSRVICSSKRHPD
Ga0210399_112859511	3300020581	Soil	TLCSCSVAISPMAEWGELSFKVVRLEQAGQEVLARAGNILVARAAFDMSVSLYQAAEIELRQGSRVICSSEQR
Ga0210406_105130962	3300021168	Soil	VPLMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSTKRDPN
Ga0210406_107212771	3300021168	Soil	MTEWGELAFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN
Ga0210405_107980261	3300021171	Soil	MPGMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDRTDGFNSFGIASQLFC
Ga0210408_103914291	3300021178	Soil	FCSNAGMTEWGELAFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN
Ga0210408_114934002	3300021178	Soil	MTELGELSFKVVRLEKAGQELLACAGNIMVARAAFDVSVSLYPSAEIDLRQGSRVRG
Ga0210397_113788371	3300021403	Soil	MPGMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSTKRDPN
Ga0210394_106800582	3300021420	Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSASLYQSAEIELRQGSRVIC
Ga0210384_112546792	3300021432	Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN
Ga0210402_119580401	3300021478	Soil	ELSFKVVRLDKAGQEVLARAGNIMVARAAFDVSVSLFRPAEIELRQGSRVICSSKPHTS
Ga0210410_102407284	3300021479	Soil	SFKVVRLEKAGQEVLARAGNIMVARAAFDVSASLYQSAEIELRQGSRVICSSKRDY
Ga0210410_112538582	3300021479	Soil	MPGMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPMEI
Ga0210409_104503782	3300021559	Soil	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSASLYQSAEIELRQGSRVICSSKRDPN
Ga0210409_113240921	3300021559	Soil	ERSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVALYQSADIEMRQGSRVICSSKRHPD
Ga0242658_11741842	3300022530	Soil	VVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRD
Ga0207692_102593142	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MPGMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN
Ga0207693_104265581	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MFPYPMTEWGELSFKVVRLEKAGQELLARAGNIMVARAAFDVSVSLFRPAEIELRQGSRVICSSKPEVK
Ga0207693_114822672	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LSFKVVRLDKAGQEVLARAGNIMVARAAFDVSVSLFRPAEIELRQGSRVICSSKPHTS
Ga0207665_107557341	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTEWGELSFKVVRLDKAGQEVLARAGNILVARAAFDVSVSLFRPAEIELRQGSRVICSSKPHTS
Ga0209419_10506452	3300027537	Forest Soil	MTEWGELSFKVVRLEKAGQELLARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSSKRDPD
Ga0209527_10760261	3300027583	Forest Soil	MAEWGELSFKVVRLEQAGQEVLARAGNILVARAAFDMSVSLYQAAEIELRQGSRVICSSEQR
Ga0209331_11345281	3300027603	Forest Soil	MRWMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPD
Ga0209528_10167722	3300027610	Forest Soil	MTEWGELSFKVVRLEKAGQEILARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSSKRDPD
Ga0209328_102154601	3300027727	Forest Soil	MFFCPMTEWGELSFKVLRLEKAGQEVLARAGNILVARAAFDVSVSLFRPAEIELRQGSRVICSTKRDPN
Ga0209656_104793992	3300027812	Bog Forest Soil	MVEWGELSFKIVRLEKAGQEVLARAGNFMVARAAFDTSVSLWPTAEIELCQGARVIHSSKQA
Ga0209040_100483931	3300027824	Bog Forest Soil	MVEWGELSFKIVRLEKAGQEVLARAGNFIVARAAFDTSVSLWPNAEIELRQGARVIHSSKQVLNPSPTILD
Ga0209040_101819762	3300027824	Bog Forest Soil	MVEWGELSFKVVRLEQVGQEVLARAGNFLVARAAFDTSVSLWPNAQIELRQGARVIHKSGDE
Ga0209040_103899922	3300027824	Bog Forest Soil	MVEWGELSFKVVRLEQAGQEVLARAGNLIIARAAFDVAVSLWQTAEIELRQGARVIYSSK
Ga0209180_105640972	3300027846	Vadose Zone Soil	MVEWGDLSFKVVRMEKAGQEVLARAGNFVVARAAFDVAVSLWETAEIELRQGARVI
Ga0209380_106729382	3300027889	Soil	MKDGLTLCSCSVAISPMAEWGELSFKVVRLEQAGQEVLARAGNILVARAAFDMSVSLYQAAEIELRQGSRVICSSEQR
Ga0209583_101585041	3300027910	Watersheds	MLGMTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSNTNGIRE
Ga0209069_104962461	3300027915	Watersheds	MTEWGELSFKVVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGTRVICSSKRAPD
Ga0209526_100462333	3300028047	Forest Soil	MAEWGELSFKVVRLEQAGQEVLARAGNILVARAAFDVSVSLYQAAEIELRQGSRVICSSKRDAR
Ga0209526_104517982	3300028047	Forest Soil	MTEWGELSFKVVRLEKAGQEVLARAGNILVARAAFDVSVSLFRPAEIELRQGSRVICSSKPEVK
Ga0209526_104949491	3300028047	Forest Soil	MVEWGELSFKIVRLEQAGQEVLARAGNFLVARAAFDTSVSLWPAAEIELRQGARVI
Ga0209526_109685732	3300028047	Forest Soil	MAEWGELSFKVVRLEKAGQEVLARAGNIMVARAAYDVSVSLYQTDEIELRQGSRVICSSKRDPN
Ga0307296_105761221	3300028819	Soil	WGELTFKIVRLETGGQEVLARAGNFMVARAAFDTSVSLWPVAAIELRQGARVILKSKDD
Ga0222749_100230342	3300029636	Soil	MTEWGELSFKVVRLEKAGQELLARAGNIMVARAAFDVSVSLYQTDEIELRQGSRVICSTKRDPN
Ga0222749_107162221	3300029636	Soil	VVRLEKAGQEVLARAGNIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN
Ga0170824_1223688422	3300031231	Forest Soil	MPGIIEWGELSLKVVRLEKAGQEVLARAGNIMVARAAFDVSVALYQRADIEMRQGSRVICSSKRHPD
Ga0170820_143593332	3300031446	Forest Soil	EWGELSFKVVRLETAGQEVLARAGDIMVARAAFDVSVSLYQSAEIELRQGSRVICSSKRDPN
Ga0306923_102970451	3300031910	Soil	MVEWGELSFKVVRVEPAGQELLAKAGNILIAKAAFDVAVSLYQTDEMELRQGIRVIRSSKRDLN
Ga0306923_116977681	3300031910	Soil	MFPLCSIRGMIEYGDLSFKVLRLETTGQELLARASNILVARAAFDVAVSLYQTDEIELRQDAKVDYAPG
Ga0306921_115265083	3300031912	Soil	MVEYGELSFKVVRLETTGQEIIARAGNLLVARAAFDMSVSLYQSAVIELRQGSRVICSNTRGT
Ga0310916_104440491	3300031942	Soil	MMPEWGELSFKVVRLESAGQEVLARAGNILVARAAFDVSVALYQTDKIELRQGSRVICSSKHDANQLLQNKPWATFL
Ga0306926_129746972	3300031954	Soil	MVEWGELSFKVVRLETAGHEVLARAGNLIVAQAAFNVAVSLWASAEIELRQGARV
Ga0306924_124945121	3300032076	Soil	MVEYGELSFKVVRLELAAQEVLARASNIMVARAAYDVAVSLYQTDEIELRQGSRVIPHPRRDTN
Ga0306920_1033348591	3300032261	Soil	MVEWGELSFKVVRLEQAGQEVLARAGNLLVARAAFDTSVSLWPAAEIELRQGARVVCSSKQN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086245

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences