NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F086250

Metagenome / Metatranscriptome Family F086250

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086250
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 66 residues
Representative Sequence MSTVTIIVVVIWNALLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR
Number of Associated Samples 98
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 75.68 %
% of genes near scaffold ends (potentially truncated) 32.43 %
% of genes from short scaffolds (< 2000 bps) 88.29 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (81.982 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(19.820 % of family members)
Environment Ontology (ENVO) Unclassified
(42.342 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(62.162 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 68.18%    β-sheet: 0.00%    Coil/Unstructured: 31.82%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF00497SBP_bac_3 12.61
PF03631Virul_fac_BrkB 12.61
PF09900DUF2127 9.91
PF13847Methyltransf_31 4.50
PF14026DUF4242 3.60
PF09939DUF2171 2.70
PF13185GAF_2 2.70
PF13649Methyltransf_25 1.80
PF08448PAS_4 0.90
PF05239PRC 0.90
PF01842ACT 0.90
PF00211Guanylate_cyc 0.90
PF12740Chlorophyllase2 0.90
PF12681Glyoxalase_2 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 12.61
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.90

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms81.98 %
UnclassifiedrootN/A18.02 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664021|ICCgaii200_c0958508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2156Open in IMG/M
2228664022|INPgaii200_c1039346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1859Open in IMG/M
3300000891|JGI10214J12806_10783648Not Available527Open in IMG/M
3300000956|JGI10216J12902_114427474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium503Open in IMG/M
3300004114|Ga0062593_100878809All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium903Open in IMG/M
3300004114|Ga0062593_101437122All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300004114|Ga0062593_101573797All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria712Open in IMG/M
3300004157|Ga0062590_101166131All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria748Open in IMG/M
3300004643|Ga0062591_100259773All Organisms → cellular organisms → Bacteria1333Open in IMG/M
3300005093|Ga0062594_103060052All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria523Open in IMG/M
3300005181|Ga0066678_10662911Not Available695Open in IMG/M
3300005338|Ga0068868_100529632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1036Open in IMG/M
3300005345|Ga0070692_10210738All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1143Open in IMG/M
3300005347|Ga0070668_100471444All Organisms → cellular organisms → Bacteria1083Open in IMG/M
3300005356|Ga0070674_101217398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium669Open in IMG/M
3300005367|Ga0070667_100916226All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium816Open in IMG/M
3300005406|Ga0070703_10362651All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300005434|Ga0070709_10517659Not Available909Open in IMG/M
3300005435|Ga0070714_100534874All Organisms → cellular organisms → Bacteria1120Open in IMG/M
3300005435|Ga0070714_100967701All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria828Open in IMG/M
3300005435|Ga0070714_102225367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium534Open in IMG/M
3300005440|Ga0070705_100483097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales937Open in IMG/M
3300005444|Ga0070694_100420352All Organisms → cellular organisms → Bacteria → Terrabacteria group1050Open in IMG/M
3300005444|Ga0070694_100848378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium751Open in IMG/M
3300005444|Ga0070694_101368215Not Available597Open in IMG/M
3300005445|Ga0070708_100056932All Organisms → cellular organisms → Bacteria3479Open in IMG/M
3300005518|Ga0070699_100318773All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1397Open in IMG/M
3300005543|Ga0070672_100414529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1156Open in IMG/M
3300005545|Ga0070695_100016527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4467Open in IMG/M
3300005545|Ga0070695_100716134All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300005578|Ga0068854_101359324Not Available641Open in IMG/M
3300005614|Ga0068856_101513877All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium685Open in IMG/M
3300005713|Ga0066905_100001190All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia8685Open in IMG/M
3300005718|Ga0068866_10695775Not Available697Open in IMG/M
3300005719|Ga0068861_100125075All Organisms → cellular organisms → Bacteria2080Open in IMG/M
3300005844|Ga0068862_100734979All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium959Open in IMG/M
3300005844|Ga0068862_101877865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium609Open in IMG/M
3300006163|Ga0070715_10101030All Organisms → cellular organisms → Bacteria → Terrabacteria group1345Open in IMG/M
3300006175|Ga0070712_100687475Not Available871Open in IMG/M
3300006755|Ga0079222_10098196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1530Open in IMG/M
3300006804|Ga0079221_10065858All Organisms → cellular organisms → Bacteria1675Open in IMG/M
3300006806|Ga0079220_11157598All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria633Open in IMG/M
3300006852|Ga0075433_10281300All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1474Open in IMG/M
3300006854|Ga0075425_100935185All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300006881|Ga0068865_100270622All Organisms → cellular organisms → Bacteria1349Open in IMG/M
3300007076|Ga0075435_101396698All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria614Open in IMG/M
3300009036|Ga0105244_10494414All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium563Open in IMG/M
3300009092|Ga0105250_10086052Not Available1276Open in IMG/M
3300009093|Ga0105240_11633282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium674Open in IMG/M
3300009098|Ga0105245_10738401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1020Open in IMG/M
3300009148|Ga0105243_10201237All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1747Open in IMG/M
3300009148|Ga0105243_12278717All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium579Open in IMG/M
3300009176|Ga0105242_10352509All Organisms → cellular organisms → Bacteria1359Open in IMG/M
3300010371|Ga0134125_10766429All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1062Open in IMG/M
3300010396|Ga0134126_10304609All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1869Open in IMG/M
3300010396|Ga0134126_12298140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria588Open in IMG/M
3300010397|Ga0134124_11820877All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium643Open in IMG/M
3300010401|Ga0134121_10140436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2052Open in IMG/M
3300011003|Ga0138514_100065818Not Available753Open in IMG/M
3300012198|Ga0137364_10381924All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1053Open in IMG/M
3300012211|Ga0137377_10329819All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1461Open in IMG/M
3300012362|Ga0137361_10291768All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1492Open in IMG/M
3300012911|Ga0157301_10180575All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium696Open in IMG/M
3300012951|Ga0164300_10147370All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1098Open in IMG/M
3300012955|Ga0164298_11003306All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium617Open in IMG/M
3300012957|Ga0164303_10456492All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium806Open in IMG/M
3300012960|Ga0164301_11902688Not Available503Open in IMG/M
3300012989|Ga0164305_10108191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1801Open in IMG/M
3300013296|Ga0157374_10100562All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2772Open in IMG/M
3300013297|Ga0157378_11093517Not Available834Open in IMG/M
3300013308|Ga0157375_12679125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria596Open in IMG/M
3300014326|Ga0157380_12221846All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium613Open in IMG/M
3300014745|Ga0157377_10193216All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1288Open in IMG/M
3300017792|Ga0163161_10351535Not Available1172Open in IMG/M
3300017965|Ga0190266_10781068All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium610Open in IMG/M
3300018027|Ga0184605_10026345All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2370Open in IMG/M
3300018028|Ga0184608_10046040All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1703Open in IMG/M
3300019361|Ga0173482_10573869Not Available562Open in IMG/M
3300019875|Ga0193701_1101783All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium533Open in IMG/M
3300020006|Ga0193735_1069268Not Available1021Open in IMG/M
3300021080|Ga0210382_10524501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium525Open in IMG/M
3300021510|Ga0222621_1091523All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium644Open in IMG/M
3300025885|Ga0207653_10019142All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2158Open in IMG/M
3300025898|Ga0207692_10605414Not Available705Open in IMG/M
3300025906|Ga0207699_11431442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium511Open in IMG/M
3300025915|Ga0207693_10080352All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2552Open in IMG/M
3300025915|Ga0207693_10865900Not Available694Open in IMG/M
3300025916|Ga0207663_10247949Not Available1309Open in IMG/M
3300025927|Ga0207687_10507971All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1007Open in IMG/M
3300025928|Ga0207700_10408977All Organisms → cellular organisms → Bacteria → Terrabacteria group1190Open in IMG/M
3300025932|Ga0207690_10870276All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium746Open in IMG/M
3300025933|Ga0207706_10155907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2008Open in IMG/M
3300025935|Ga0207709_10170993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1525Open in IMG/M
3300025935|Ga0207709_10259274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1274Open in IMG/M
3300025938|Ga0207704_10751919All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium811Open in IMG/M
3300025939|Ga0207665_10309895All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1182Open in IMG/M
3300025939|Ga0207665_11065051All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria644Open in IMG/M
3300025949|Ga0207667_11268221All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium714Open in IMG/M
3300025981|Ga0207640_10959685Not Available750Open in IMG/M
3300025986|Ga0207658_10817087All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium847Open in IMG/M
3300026078|Ga0207702_12254298All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium533Open in IMG/M
3300026118|Ga0207675_100076663All Organisms → cellular organisms → Bacteria3131Open in IMG/M
3300026121|Ga0207683_11861480Not Available551Open in IMG/M
3300028592|Ga0247822_11327295All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium604Open in IMG/M
3300028709|Ga0307279_10103270All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium533Open in IMG/M
3300028711|Ga0307293_10003967All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3839Open in IMG/M
3300028715|Ga0307313_10031086All Organisms → cellular organisms → Bacteria1507Open in IMG/M
3300028771|Ga0307320_10142749Not Available924Open in IMG/M
3300031421|Ga0308194_10143349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium730Open in IMG/M
3300031716|Ga0310813_12292580All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium512Open in IMG/M
3300032122|Ga0310895_10268030All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria796Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere19.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil14.41%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere7.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.41%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.50%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.50%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.60%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.70%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.70%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil2.70%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.70%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.70%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.80%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.90%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.90%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.90%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009036Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaGHost-AssociatedOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011003Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019875Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2EnvironmentalOpen in IMG/M
3300020006Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021510Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coexEnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028709Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300031421Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICCgaii200_095850832228664021SoilMSTVTIIVVVIWNALLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR
INPgaii200_103934642228664022SoilMSTVTIVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR
JGI10214J12806_1078364813300000891SoilMSTVTVVVIIWNALLFAALATVLVRREWLLQWITQLDGQQGLERVASVDDGWAAFLKEHPELTDR*
JGI10216J12902_11442747413300000956SoilVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGFGRVASGDDDWAAFLKEHPELTDR*
Ga0062593_10087880923300004114SoilMSTVTIIVVVIWNALLFAALATMLVRRERLLAWITQLDGQQGLARVPSSDDGWAAFLKEHPELTDR*
Ga0062593_10143712213300004114SoilMSTVTIVVVIWNALLFAALGAMLVRRERLLQWITQLDGRQGLGRVANDDDDGWAAFLKEHPELTDR*
Ga0062593_10157379713300004114SoilMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLERVASVDDGWAAFLKEHPELTDR*
Ga0062590_10116613123300004157SoilMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLERVASADDGWAAFLEEHPELTDR*
Ga0062591_10025977313300004643SoilMSTVTIVVVIWNALLFAALGAMLVRRERLLQWITQLDGRQGLGRVANDDDDRWAAFLNEHPELTDR*
Ga0062594_10306005223300005093SoilMSTVTIVVVIWNALLFAALAAMLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR*
Ga0066678_1066291123300005181SoilMSTVTIVFMGIWNALLLAALATLLVRRKRLFRWITQSDGQQAVERIGSGDEGWRAFLKEHPELTDG*
Ga0068868_10052963223300005338Miscanthus RhizosphereMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWTAFLKEHPELTDR*
Ga0070692_1021073823300005345Corn, Switchgrass And Miscanthus RhizosphereVSTVTIIVVVIWNALLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0070668_10047144413300005347Switchgrass RhizosphereMSTVTIVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0070674_10121739823300005356Miscanthus RhizosphereLVTIGLPPSKSNPAPIGVVCRRTQEAAMSTVTIVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASSDDDWAAFLKEHPELTAR*
Ga0070667_10091622623300005367Switchgrass RhizosphereVSTVTIIVVVIWNALLFAALATMLVRRERLLRWITQLDGQQGLGRVASSDDDWAAFLKEHPELTDR*
Ga0070703_1036265123300005406Corn, Switchgrass And Miscanthus RhizosphereMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR*
Ga0070709_1051765913300005434Corn, Switchgrass And Miscanthus RhizosphereMSTVTIIVVVVWNALLFAALATMLVRRERLLAWITQLDGQQGLRQVPSGDDGWAAFLKEHPELTDR*
Ga0070714_10053487413300005435Agricultural SoilMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLERVPSGDDGWAAFLKEHPELTDR*
Ga0070714_10096770123300005435Agricultural SoilMSTVTIVVVIWNAVLFAALAAMLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR*
Ga0070714_10222536713300005435Agricultural SoilMSTVTIIVVVIWNALLFAALATMLVRRERLLAWITQLDGQQGLGQVPSGDDGWAAFLKEHPELTDR*
Ga0070705_10048309723300005440Corn, Switchgrass And Miscanthus RhizosphereMSTVTIVVVVIWNALLFGVLAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWVAFLKDHPELTDR*
Ga0070694_10042035213300005444Corn, Switchgrass And Miscanthus RhizosphereMSTVTIIVVVIWNALLFAALATMLVRRERLLAWITQLDGQQGLGQVPSGDDGWAAFLKEHPELT
Ga0070694_10084837823300005444Corn, Switchgrass And Miscanthus RhizosphereIGVGCRRTQEAAVSTVTIIVVVIWNALLFAALATMLVRRERLLRWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0070694_10136821523300005444Corn, Switchgrass And Miscanthus RhizosphereMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWATFLKEHPELTDR*
Ga0070708_10005693243300005445Corn, Switchgrass And Miscanthus RhizosphereMSTVTIIVVVIWNALLFAALATMLVRRERLLAWITQLDGQQGLGQVCSGDDGWAAFLKEHPELTDR*
Ga0070699_10031877333300005518Corn, Switchgrass And Miscanthus RhizosphereTQEAAMSTVTIIVVVVWNALLFAALATMLVRRERLLAWITQLDGQQGLRQVPSGDDGWAAFLKEHPELTDR*
Ga0070672_10041452923300005543Miscanthus RhizosphereMSTVTIVVVVIWNALLFGVLAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0070695_10001652713300005545Corn, Switchgrass And Miscanthus RhizosphereVSTVTIIVVVIWNALLFAALATMLVRRERLLRWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0070695_10071613413300005545Corn, Switchgrass And Miscanthus RhizosphereVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR
Ga0068854_10135932413300005578Corn RhizosphereMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0068856_10151387723300005614Corn RhizosphereVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLGRVASGDDDWTAFLKEHPELTDR*
Ga0066905_10000119083300005713Tropical Forest SoilMSTVTIVVVIWNVVLLAALAALLARRERLLRWITQSDGQQGVERVGSGDEGWTAFLKEHPELIDR*
Ga0068866_1069577523300005718Miscanthus RhizosphereMSTVTIVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTAR*
Ga0068861_10012507533300005719Switchgrass RhizosphereVSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0068862_10073497913300005844Switchgrass RhizosphereVSTVTIIVVVIWNALLFAALATMLVRRERLLAWITQLDGQQGLTQAPGGDDGWAAFLKEHPELTDR*
Ga0068862_10187786513300005844Switchgrass RhizosphereVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR
Ga0070715_1010103033300006163Corn, Switchgrass And Miscanthus RhizosphereMSTVTIIVVVVWNALLFAALATMLVRRERLLAWITQLDGQQGLGQVPSGDDSWAAFLKEHPELTDR*
Ga0070712_10068747523300006175Corn, Switchgrass And Miscanthus RhizosphereMSTVTIVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAPSLKNIPS*
Ga0079222_1009819623300006755Agricultural SoilMSTVTIVVVIWNALLFAALGAMLVRRERLLQWITQLDGRQGLGRVANDDDDRWAAFLKEHPELTDR*
Ga0079221_1006585833300006804Agricultural SoilMSTVTIVVVIWNALLFAALAAMLVRRERLLQWITQLDGQQGLRRITNDDDGWAAFLKEHPELTNH*
Ga0079220_1115759813300006806Agricultural SoilVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLRRVTNDDDDGWAAFLKEHPELTDR*
Ga0075433_1028130023300006852Populus RhizosphereMSTVTIVVVIWNALLFAALGAVLVRRERLLQWITQLDGRQGLGRVANDDDDRWAAFLKEHPELTDR*
Ga0075425_10093518523300006854Populus RhizosphereMSTVTIVVVIWNALLFAALATVLVRRERLLQWITQLDGQQGLRRITNDDDGWAAFLKEHPELTNH*
Ga0068865_10027062213300006881Miscanthus RhizosphereMSTVTIVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWGAFLKEHPELTDR*
Ga0075435_10139669823300007076Populus RhizosphereMSTVTIVVVIWNALLFAALAAMLVRRERLFQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR*
Ga0105244_1049441413300009036Miscanthus RhizosphereMSTVPIVVVVIWNALLLGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWTAFLKEHPELTDR*
Ga0105250_1008605223300009092Switchgrass RhizosphereMSTVTIVVVIIWNTLLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWATFLKEHPELTDR*
Ga0105240_1163328223300009093Corn RhizosphereMSTVTIVVVVIWNALLLGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0105245_1073840113300009098Miscanthus RhizosphereAMSTVTVVVIIWNALLFAALAAMLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR*
Ga0105243_1020123733300009148Miscanthus RhizosphereAMSTVTIVVVIWNALLFAALAAMLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR*
Ga0105243_1227871723300009148Miscanthus RhizosphereMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGRQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0105242_1035250913300009176Miscanthus RhizosphereMSTVTIVVVIWNALLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR*
Ga0134125_1076642913300010371Terrestrial SoilMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLRRVTNDDDDGWAAFLKEHPELTDR*
Ga0134126_1030460933300010396Terrestrial SoilMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWVAFLKDHPEL
Ga0134126_1229814013300010396Terrestrial SoilQEAAMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLERVPSGDDGWAAFLKEHPELTDR*
Ga0134124_1182087713300010397Terrestrial SoilVSTVTIIVVVIWNALLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDDDWAAFLEEHPELTDR*
Ga0134121_1014043623300010401Terrestrial SoilMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLERVPSGDDGWAAFLKERPELTDR*
Ga0138514_10006581823300011003SoilLSTVTIVVVGIWNVLLLAALAALLTRRERLLRWITQSDGQQGVERVGSGDEGWTAFLKEHPELTDR*
Ga0137364_1038192423300012198Vadose Zone SoilMSTVTIVVVGIWNVLLLAALATLLVRRERLLRWITQSDGQQGIERVGSGDEGWTAFLKDHPELTDR*
Ga0137377_1032981923300012211Vadose Zone SoilMSTVTIVVVGIWNVLLLAALATLLVRRERLLRWITQSDGQQGIERVGSGDDRWTAFLKEHPELTDR*
Ga0137361_1029176813300012362Vadose Zone SoilMSTVTIVVVGIWNVLLLAALAVLLVRRERMLQWITQSDGQQGIEWVGSGDEGWTAFLNEHPELTDR*
Ga0157301_1018057513300012911SoilWNALLFAALATMLVRRERLFRWITQLDGQQGLGRVAGGDDDWAAFLKEHPELTDR*
Ga0164300_1014737033300012951SoilVSTVTILVVVIWNVLLFAALATMLERRERLLQWITQLDGQQGLGRVASSDDDWTAFLKEHPELTDR*
Ga0164298_1100330613300012955SoilMITVTIIVVVIWNALLFAALATMLVRRERLLAWITQLDGQQGLGQVPSGDDGWAAFLREHPELTDR*
Ga0164303_1045649213300012957SoilEAAMSTVTIIVVVIWNALLFAALAAMLVRRERLLAWITQLDGQQGLGQVPSGDDGWAAFLKEHPELTDR*
Ga0164301_1190268813300012960SoilVSTVTIIVVVIWNALLFAALATMLVRRERLLQWMTQLDGQQGLGRVASGDDDWAAFLEEHPELTDR*
Ga0164305_1010819123300012989SoilVSTVTIIVVVIWNALLFAALATMLVRRERLLQWITQLDGQQGLGRVASSDDDWTAFLKEHPELTDR*
Ga0157374_1010056243300013296Miscanthus RhizosphereMSTVTIVVVVIWNALLLGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWTAFLKEHPELTDR*
Ga0157378_1109351713300013297Miscanthus RhizosphereMSTVTIVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASSDDDWAA
Ga0157375_1267912513300013308Miscanthus RhizosphereALLFAALAAMLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR*
Ga0157380_1222184623300014326Switchgrass RhizosphereVSTVTIIVVVIWNALLFAALATMLVRRERLLRWITQLDGQQGLGRVASGDDDWVAFLKDHPELTDR*
Ga0157377_1019321633300014745Miscanthus RhizosphereMSTVTIVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASSDDDWAAFLKEHPELTDR*
Ga0163161_1035153523300017792Switchgrass RhizosphereMSTVTIVVVVIWNALLLGALAAMLVRHERLLQWITQLDGRQGLGRVASGDDDWAAFLKEHPELTDR
Ga0190266_1078106823300017965SoilMSTVTIVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGGVASGDDAWEAFFKEHPELTDR
Ga0184605_1002634533300018027Groundwater SedimentMSTVTIVVVVIWNALLFGALAAMLVQHERLLQWITQLDGQQGLGRVASGDDDWAAFLEEHPELTDR
Ga0184608_1004604023300018028Groundwater SedimentMSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDEDWAAFLKDHPELTDR
Ga0173482_1057386913300019361SoilMSTVTVVVISWNAPLFAALATVLVRRERLLQWITQLDGQQGLERVASGDDGWETFLKEHPELTDR
Ga0193701_110178313300019875SoilCRACNAYSNPAPVGVGCRRTREAAMSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDEDWAAFLKDHPELTDR
Ga0193735_106926813300020006SoilMSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDEDWAAFLKD
Ga0210382_1052450113300021080Groundwater SedimentMSTVTIVIVVIWNALLFGALAAMLVQHERLLQWITQLDGQQGLGRVASGDDGWAAFLKEHPELTDR
Ga0222621_109152323300021510Groundwater SedimentGFGHCRACNAYSNPAPVGVGCRRTREAAMSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDEDWAAFLKDHPELTDR
Ga0207653_1001914233300025885Corn, Switchgrass And Miscanthus RhizosphereMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR
Ga0207692_1060541413300025898Corn, Switchgrass And Miscanthus RhizosphereMSTVTIIVVVVWNALLFAALATMLVRRERLLAWITQLDGQQGLRQVPSGDDGWAAFLKEH
Ga0207699_1143144213300025906Corn, Switchgrass And Miscanthus RhizosphereMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLGRVASGDDDWATFLKEHPELTDR
Ga0207693_1008035223300025915Corn, Switchgrass And Miscanthus RhizosphereMSTVTIIVVVIWNALLFAALATMLVRRERLLAWITQLDGQQGLGQVPSGDDSWAAFLKEHPELTDR
Ga0207693_1086590013300025915Corn, Switchgrass And Miscanthus RhizospherePGPDRSRLSLTQEAAMSTVTIIVVVVWNALLFAALATMLVRRERLLAWITQLDGQQGLRQVPSGDDGWAAFLKEHPELTDR
Ga0207663_1024794913300025916Corn, Switchgrass And Miscanthus RhizosphereMSTVTIVVVVIWNALLFGALATMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELT
Ga0207687_1050797123300025927Miscanthus RhizosphereMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWTAFLKEHPELTDR
Ga0207700_1040897713300025928Corn, Switchgrass And Miscanthus RhizosphereMSTVTIIVVVVWNALLFAALATMLVRRERLLAWITQLDGQQGLGQVPSGDDGWAAFLKEHPELTDR
Ga0207690_1087027613300025932Corn RhizosphereGCRRTQEAAMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAPSLKNIPS
Ga0207706_1015590713300025933Corn RhizosphereMSTVTIVVVVIWNALLFGVLAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTDR
Ga0207709_1017099313300025935Miscanthus RhizosphereMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASSDDDWAAFLKEHPELTAR
Ga0207709_1025927413300025935Miscanthus RhizosphereAMSTVTIVVVIWNALLFAALAAMLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR
Ga0207704_1075191913300025938Miscanthus RhizosphereMSTVTMVVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWGAFLKEHPELTDR
Ga0207665_1030989523300025939Corn, Switchgrass And Miscanthus RhizosphereMSTVTIVVIIWNALLFAALAAMLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR
Ga0207665_1106505123300025939Corn, Switchgrass And Miscanthus RhizosphereVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLERVPSGDDGWAAFLKEHPELTDR
Ga0207667_1126822123300025949Corn RhizosphereVSTVTIIVVVIWNALLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDDDWTAFLKEHPELTDR
Ga0207640_1095968513300025981Corn RhizosphereMSTVTIVVVIIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWATFLKEHPELTDR
Ga0207658_1081708723300025986Switchgrass RhizosphereVSTVTIIVVVIWNALLFAALATMLVRRERLLRWITQLDGQQGLGRVASSDDDWAAFLKEHPELTAR
Ga0207702_1225429813300026078Corn RhizosphereWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWTAFLKEHPELTDR
Ga0207675_10007666313300026118Switchgrass RhizosphereMSTVTIVVVIWNALLFGALAAMLVRHERLLQWITQLDGQQGLGRVASGDDDWATFLKEHPELTDR
Ga0207683_1186148013300026121Miscanthus RhizosphereMSTVTVVVIIWNALLFAALATVLVRRERLLQWITQLDGQQGLERVASADDGWAAFLKEHPELTDR
Ga0247822_1132729523300028592SoilIVVVVIWNALLFGALATMLVRHERLLQWITQLDGQQGLGRVASGDDDWAAFLKEHPELTD
Ga0307279_1010327013300028709SoilSNPAPVGVGCRRTREAAMSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDEDWAAFLKDHPELTDR
Ga0307293_1000396763300028711SoilMSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDEDWAAFLKEHPRSEER
Ga0307313_1003108633300028715SoilMSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDDDWVAFLEEHPELTDR
Ga0307320_1014274923300028771SoilMSTVTIVVVAIWNALLLAALATLLARRERLLRWITQSDGQQRIERVGSGDDGWTAFLKEHPELTDR
Ga0308194_1014334923300031421SoilAMSTVTIIVVVIWNVLLFAALATMLVRRERLLQWITQLDGQQGLGRVASGDEDWAAFLKDHPELTDR
Ga0310813_1229258023300031716SoilMSTVTIIVVVIWNALLFAALATMLVRRERLHQWITQLDGQQGLGRVASGDDDWAAFLKEHPELSDR
Ga0310895_1026803023300032122SoilVTIVVIIWNALLFAALAAMLVRRERLLQWITQLDGQQGLRRVTNDDDGWAAFLKEHPELTDR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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