Metagenome Family F086314

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086314
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	101 residues
Representative Sequence	LPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAAGIVAKALVALLKALAPLIAPR
Number of Associated Samples	90
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.81 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	81.08 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.189 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.622 % of family members)
Environment Ontology (ENVO)	Unclassified (26.126 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.342 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.60% β-sheet: 0.00% Coil/Unstructured: 37.40%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13087	AAA_12	7.21
PF01494	FAD_binding_3	6.31
PF00528	BPD_transp_1	3.60
PF04909	Amidohydro_2	3.60
PF01663	Phosphodiest	3.60
PF10518	TAT_signal	3.60
PF13561	adh_short_C2	2.70
PF00496	SBP_bac_5	2.70
PF13604	AAA_30	2.70
PF10387	DUF2442	2.70
PF09992	NAGPA	1.80
PF12706	Lactamase_B_2	1.80
PF13538	UvrD_C_2	1.80
PF04199	Cyclase	0.90
PF05378	Hydant_A_N	0.90
PF13483	Lactamase_B_3	0.90
PF02720	DUF222	0.90
PF01061	ABC2_membrane	0.90
PF03328	HpcH_HpaI	0.90
PF13391	HNH_2	0.90
PF13416	SBP_bac_8	0.90
PF04250	DUF429	0.90
PF02738	MoCoBD_1	0.90
PF01425	Amidase	0.90
PF08378	NERD	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	12.61
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	6.31
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	6.31
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	6.31
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.80
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.90
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.90
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.90
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.90
COG2410	Predicted nuclease (RNAse H fold)	General function prediction only [R]	0.90
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.19 %
Unclassified	root	N/A	10.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.19 %
Unclassified	root	N/A	10.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.19 %
Unclassified	root	N/A	10.81 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	45.05 %
Unclassified	root	N/A	10.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.60 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	45.05 %
Unclassified	root	N/A	10.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	44.14 %
Unclassified	root	N/A	10.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	44.14 %
Unclassified	root	N/A	10.81 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	44.14 %
Unclassified	root	N/A	10.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_11390965	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	744	Open in IMG/M
3300001431\|F14TB_104471732	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300002558\|JGI25385J37094_10156167	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	611	Open in IMG/M
3300002908\|JGI25382J43887_10106495	Not Available	1476	Open in IMG/M
3300004267\|Ga0066396_10067265	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	608	Open in IMG/M
3300005172\|Ga0066683_10058843	All Organisms → cellular organisms → Bacteria	2280	Open in IMG/M
3300005186\|Ga0066676_10075709	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300005186\|Ga0066676_10379679	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	950	Open in IMG/M
3300005187\|Ga0066675_10837648	Not Available	695	Open in IMG/M
3300005332\|Ga0066388_100495004	Not Available	1859	Open in IMG/M
3300005332\|Ga0066388_100963457	All Organisms → cellular organisms → Bacteria → Proteobacteria	1422	Open in IMG/M
3300005446\|Ga0066686_10102869	Not Available	1842	Open in IMG/M
3300005446\|Ga0066686_10643915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	720	Open in IMG/M
3300005450\|Ga0066682_10281815	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300005526\|Ga0073909_10155732	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300005549\|Ga0070704_100413316	Not Available	1154	Open in IMG/M
3300005552\|Ga0066701_10250774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1095	Open in IMG/M
3300005553\|Ga0066695_10437705	Not Available	807	Open in IMG/M
3300005713\|Ga0066905_100094023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2014	Open in IMG/M
3300005713\|Ga0066905_101132512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	696	Open in IMG/M
3300006049\|Ga0075417_10017564	All Organisms → cellular organisms → Bacteria	2801	Open in IMG/M
3300006058\|Ga0075432_10004445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4778	Open in IMG/M
3300006854\|Ga0075425_101598812	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	735	Open in IMG/M
3300006880\|Ga0075429_100819709	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	815	Open in IMG/M
3300007255\|Ga0099791_10002762	All Organisms → cellular organisms → Bacteria	7137	Open in IMG/M
3300007255\|Ga0099791_10017100	All Organisms → cellular organisms → Bacteria	3092	Open in IMG/M
3300009012\|Ga0066710_101788834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	929	Open in IMG/M
3300009012\|Ga0066710_101863028	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300009090\|Ga0099827_10017501	All Organisms → cellular organisms → Bacteria	4879	Open in IMG/M
3300009137\|Ga0066709_101859131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	841	Open in IMG/M
3300009137\|Ga0066709_103102940	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300009610\|Ga0105340_1291785	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300009810\|Ga0105088_1028348	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	898	Open in IMG/M
3300009815\|Ga0105070_1012062	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300010043\|Ga0126380_11475977	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300010046\|Ga0126384_10057013	All Organisms → cellular organisms → Bacteria	2721	Open in IMG/M
3300010047\|Ga0126382_10465213	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300010304\|Ga0134088_10394032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300010323\|Ga0134086_10209234	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300010329\|Ga0134111_10287700	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	682	Open in IMG/M
3300010336\|Ga0134071_10150957	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1130	Open in IMG/M
3300010361\|Ga0126378_10947746	Not Available	966	Open in IMG/M
3300010362\|Ga0126377_10753293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1030	Open in IMG/M
3300010362\|Ga0126377_11682401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300010398\|Ga0126383_10598113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1174	Open in IMG/M
3300011270\|Ga0137391_11055346	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	659	Open in IMG/M
3300012202\|Ga0137363_10363636	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300012204\|Ga0137374_10063740	All Organisms → cellular organisms → Bacteria	3681	Open in IMG/M
3300012205\|Ga0137362_10966873	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300012206\|Ga0137380_10186321	All Organisms → cellular organisms → Bacteria	1886	Open in IMG/M
3300012349\|Ga0137387_10014633	All Organisms → cellular organisms → Bacteria	4721	Open in IMG/M
3300012351\|Ga0137386_10770352	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	691	Open in IMG/M
3300012361\|Ga0137360_10044824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3156	Open in IMG/M
3300012362\|Ga0137361_10110938	All Organisms → cellular organisms → Bacteria	2403	Open in IMG/M
3300012362\|Ga0137361_10663315	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300012363\|Ga0137390_11623055	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300012685\|Ga0137397_10238564	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300012685\|Ga0137397_10263623	Not Available	1284	Open in IMG/M
3300012922\|Ga0137394_10361122	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300012930\|Ga0137407_10663147	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300012930\|Ga0137407_12255485	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300012944\|Ga0137410_11365512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	615	Open in IMG/M
3300012948\|Ga0126375_10442986	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300012971\|Ga0126369_10674881	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300012986\|Ga0164304_10897602	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	693	Open in IMG/M
3300014154\|Ga0134075_10361375	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	637	Open in IMG/M
3300015245\|Ga0137409_10022742	All Organisms → cellular organisms → Bacteria → Proteobacteria	6149	Open in IMG/M
3300018031\|Ga0184634_10277385	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	769	Open in IMG/M
3300018053\|Ga0184626_10024494	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
3300018053\|Ga0184626_10040903	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300018063\|Ga0184637_10198368	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1231	Open in IMG/M
3300018074\|Ga0184640_10045390	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300018074\|Ga0184640_10501227	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	534	Open in IMG/M
3300018078\|Ga0184612_10256041	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	903	Open in IMG/M
3300018078\|Ga0184612_10330722	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300018079\|Ga0184627_10059177	All Organisms → cellular organisms → Bacteria	1991	Open in IMG/M
3300018079\|Ga0184627_10553170	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300018079\|Ga0184627_10684489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300018084\|Ga0184629_10443249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	680	Open in IMG/M
3300018433\|Ga0066667_11112858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300019789\|Ga0137408_1474292	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300021081\|Ga0210379_10116683	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1119	Open in IMG/M
3300025918\|Ga0207662_10645468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	739	Open in IMG/M
3300025923\|Ga0207681_11276453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	617	Open in IMG/M
3300025940\|Ga0207691_10341357	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300026285\|Ga0209438_1096924	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	904	Open in IMG/M
3300026297\|Ga0209237_1038908	All Organisms → cellular organisms → Bacteria	2510	Open in IMG/M
3300026327\|Ga0209266_1114218	Not Available	1157	Open in IMG/M
3300026332\|Ga0209803_1176229	Not Available	808	Open in IMG/M
3300026528\|Ga0209378_1043591	Not Available	2239	Open in IMG/M
3300026537\|Ga0209157_1061190	Not Available	1935	Open in IMG/M
3300026537\|Ga0209157_1166436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	973	Open in IMG/M
3300026540\|Ga0209376_1010110	All Organisms → cellular organisms → Bacteria	7057	Open in IMG/M
3300027490\|Ga0209899_1004899	All Organisms → cellular organisms → Bacteria	3079	Open in IMG/M
3300027533\|Ga0208185_1164768	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300027655\|Ga0209388_1003584	All Organisms → cellular organisms → Bacteria	3870	Open in IMG/M
3300027655\|Ga0209388_1009185	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300027880\|Ga0209481_10245423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	901	Open in IMG/M
3300027909\|Ga0209382_11597743	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300031562\|Ga0310886_10838771	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300031720\|Ga0307469_12207300	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	536	Open in IMG/M
3300031740\|Ga0307468_100206637	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1335	Open in IMG/M
3300031740\|Ga0307468_101019248	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	730	Open in IMG/M
3300032066\|Ga0318514_10454664	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300032180\|Ga0307471_100604521	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300032180\|Ga0307471_100822216	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1096	Open in IMG/M
3300032180\|Ga0307471_100868745	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300033433\|Ga0326726_10015596	All Organisms → cellular organisms → Bacteria	6621	Open in IMG/M
3300034164\|Ga0364940_0151510	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	669	Open in IMG/M
3300034178\|Ga0364934_0066918	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300034417\|Ga0364941_098928	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	701	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.79%
Host-Associated	Host-Associated	7.21%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.28%
Aquatic	Environmental → Aquatic	13.51%
Plants	Host-Associated → Plants	7.21%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.68%
Sediment	Environmental → Aquatic → Sediment	12.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.21%
Floodplain	Environmental → Terrestrial → Floodplain	2.70%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Peat	Environmental → Terrestrial → Peat	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.61%
Loam	Environmental → Terrestrial → Soil → Loam	8.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.41%
Sand	Environmental → Terrestrial → Soil → Sand	2.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.50%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.70%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.51%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.11%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.50%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.70%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.70%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.90%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_113909651	3300000443	Soil	VPRRQQESVALRVLGALVGIVILEVTCYVTFRSEYEADPSLWLFIGGSVAFNLWFQWWTLPDKALKSLIAAMLAEAGLPATARIVANAIVALGRGLAPLL
F14TB_1044717321	3300001431	Soil	VPRRQQESVALRVPAALVGIILLEVTRYVTFRSEYEADPSLWLFIGGSVAFNLWFQWWTLPDKALKSLIAAMLAEAGLPATARIVANAIVALGRGLAPLLA
JGI25385J37094_101561672	3300002558	Grasslands Soil	LAARQGRRESVALRVLAAFVGIVGLEVVRYFTFRPEYQADPSLCLVVAGSIAFNIWFQWWTLPNTALKALIAAALAQAGLPLAARIVATAVVALGKGLAPLLAPR*
JGI25382J43887_101064951	3300002908	Grasslands Soil	IVGLEVVRYFTFRPEYQADPSLCLVVAGSIAFNIWFQWWTLPNTALKALIAAALAQAGLPLAARIVATAVVALGKGLAPLLAPR*
Ga0066396_100672652	3300004267	Tropical Forest Soil	LSTRRPASIGLRLLAAFTGIVGLEVVRYVAYRPEYQADPSLWFLIAGSIAFNSWFQWWTLPDTSSKALIAAILSEAGLPAASRIVAKAVVALLTALAPLISPR*
Ga0066683_100588434	3300005172	Soil	VSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKA
Ga0066676_100757094	3300005186	Soil	LPARQPTSLALRVLAALIGIIGLEVVRYFAFRLEYQADPSLWLLIVGSIAFNIWFQWWYLPDTAWKALIAAALTEAGLPPAARIVAKAVGALLTALAPLIAPR*
Ga0066676_103796792	3300005186	Soil	VSRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIVAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANAVVALMTGLALLIAPR*
Ga0066675_108376482	3300005187	Soil	PLSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLTALSPLIAPRP*
Ga0066388_1004950043	3300005332	Tropical Forest Soil	LSTHRPASIGLRLLAAFTGIVGLEVVRYVAYRPEYQADPSLWFLIAGSIAFNSWFQWWTLPDTSSKALIAAILSEAGLPAASRIVAKAVVGLFTALAPLISPR*
Ga0066388_1009634572	3300005332	Tropical Forest Soil	LSTRRPASIGLRLLAAFTGIVGLEVVRYFAYTSEYQADSSLWFLIAGSIAFNSWFQWWTLPDTSLKAILSEAGLPAASRIVAKAVVALLTALAPLISPR*
Ga0066686_101028694	3300005446	Soil	LPARQPTSLALRVLAALIGIIGLEVVRYFAFRLEYQADPSLWLLIVGSIAFNIWFQWWNLPDTAWKALIAAALTEAGLPPAARIVAKAVGALLTALAPLIAPR*
Ga0066686_106439153	3300005446	Soil	SDAPLPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTAWKALIAAALTEARLPPAAGIVAKALVALLKALAPLIAPR*
Ga0066682_102818152	3300005450	Soil	VSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLTALSPLIAPRP*
Ga0073909_101557321	3300005526	Surface Soil	LPAHQPPSLALRTLAALAGIVSLELVRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAARIVAKAIVALLTALAPLIAPR*
Ga0070704_1004133162	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LPARQPPSLALRTLAALAGIVGLELVRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVWKALIATALTEAGLPPAARIVAKAIVALLKALAPLIAPR*
Ga0066701_102507741	3300005552	Soil	LPARRRRRESIALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAARIIAYAAAALVKGLAPLLAPR*
Ga0066695_104377051	3300005553	Soil	GLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLTALSPLIAPRP*
Ga0066905_1000940233	3300005713	Tropical Forest Soil	LSTRRPASIGLRLLAAFTGIVSLEVVRYFAYRPEYQADPSLWFLIAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALAPLISPR*
Ga0066905_1011325121	3300005713	Tropical Forest Soil	LSTSLGRRSSVAIRVLAALIGIVGLEVIRYFTFSSEYQVDRSLWLVVAGSIAFNIWFQWWTLPDTALKSLIAAALTETGLPPAARIVTNAVTSLVTGLAPLIAPR*
Ga0075417_100175644	3300006049	Populus Rhizosphere	VPRRQQESVALRVLGALVGIVILEVTRYVTFRSEYEADPSLWLFIGGSVAFNLWFQWWTLPDKALKSLIAAMLAEAGLPATARIVANAIVALGRGLAPLLAPH*
Ga0075432_100044456	3300006058	Populus Rhizosphere	LSTRRPASIALRLLAAFTGIVGLEVVRYFAYRPEYQADPSLWFLIAGSIAFNSWFQWWTLPDTSAKALIAAILSEAGLPAASRIVAKAIVALLTALAPLISPR*
Ga0075425_1015988122	3300006854	Populus Rhizosphere	LPARPPSSLALRVLAALSGIVGLELVRYFSFSSEYQADPSLWLVITGSIAFNIWFQWWTLPATVWKALFAAALTQAGLPPAARIVAKAIVALLKALAPLIAPR*
Ga0075429_1008197092	3300006880	Populus Rhizosphere	LSTRRPASIALRLLAAFTGIVGLEVVRYFAYRPEYQADPSLWFLIAGSIAFNSWFQWWTLPDTSAKALIAAILSEAGLPAASRIVAKAVVALLTALAPLISPR*
Ga0099791_100027624	3300007255	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFRWWTLPDTTWKALIAAALTEAGLPPTARIVAYAAAALIKGLAPLIAPR*
Ga0099791_100171003	3300007255	Vadose Zone Soil	VSRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIIAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANAVVALMTGLAPLIAPR*
Ga0066710_1017888342	3300009012	Grasslands Soil	LPARQPASLALRVLAALLGIVALEAVRYFAFRSEYQADPSLWFLIAGSIAFNIWFQWWTLPNTAWKALIAAALTEAGLPPAARIVAKALVALLKALAPLIAPR
Ga0066710_1018630281	3300009012	Grasslands Soil	VSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVA
Ga0099827_100175015	3300009090	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFRWWTLPDTAWKALIAAALSEAGLPPTARIVAYAVAALIKGLAPLIAPR*
Ga0066709_1018591311	3300009137	Grasslands Soil	LSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLTALSPLIAPRP*
Ga0066709_1031029402	3300009137	Grasslands Soil	LPARRAQSPTLRVLAAFIGIVGLEVVRYVAFRSEYQTEPSLWFVVAGSIAFNIWFQWWTLPDTAWKALIAAALTEARLPPAAGIVAKALVALLKALAPLIAPR*
Ga0105340_12917852	3300009610	Soil	LSGLSDAPLPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAAGIVAKALVALLKALAPLIAPR*
Ga0105088_10283481	3300009810	Groundwater Sand	LPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAAGIVAKALVALLKALAPLIAPR*
Ga0105070_10120622	3300009815	Groundwater Sand	LPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAAGIVAKALVALLKALAPLIAPR*
Ga0126380_114759771	3300010043	Tropical Forest Soil	LSTRRPASIGLRLLAAFTGIVGLEVVRYFAYTSEYQADSSLWFLIAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALAPLISPR*
Ga0126384_100570132	3300010046	Tropical Forest Soil	LSTRRPASIGLRLLAAFTGIVGLEVVRYFAYTSEYQADSSLWFLIAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALAPLVSPR*
Ga0126382_104652132	3300010047	Tropical Forest Soil	LIGIVGLEVIRYFTFSSEYQVDRSLWLVVAGSIAFNIWFQWWTLPDTALKSLIAAALTETGLPPAARIVTNAVTSLVTGLAPLIAPR*
Ga0134088_103940321	3300010304	Grasslands Soil	VSRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWFIIAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLSPAARIVANAVVALMTGLA
Ga0134086_102092342	3300010323	Grasslands Soil	LPARQPTSLALRVLAALIGIIGLEVVRYFAFRLEYQADPSLWLLIVGSIAFNIWFQWWNLPDTAWKALIAAALNEAGLPPAARIVAKAVGALLTALAPLIAPR*
Ga0134111_102877002	3300010329	Grasslands Soil	VSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLTALSPLIAP
Ga0134071_101509572	3300010336	Grasslands Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADSSLWLVITGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPTARIVAYAVAALIKGLAPLIAPR*
Ga0126378_109477462	3300010361	Tropical Forest Soil	LSTRRPASIGLRLLAAFTGIVGLEVVRYFAYRPEYQADASLWFLIAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALAPLISLR*
Ga0126377_107532932	3300010362	Tropical Forest Soil	LIGIVSLEVIRYFTFSSEYQVDRSLWLVVAGSIAFNIWFQWWTLPDTALKSLIAAALTETGLPPAARIVTNAVTSLVTGLAPLIAPR*
Ga0126377_116824012	3300010362	Tropical Forest Soil	VSRHSSVAIRVVAALIGIIGLEMIRYFTFSSEYLVDPSLWLVIAGSIAFNLWFQWWTLPDTALKSLIAAALTQTGLPPAARIVANAVVALMTGLAPLIAPR*
Ga0126383_105981132	3300010398	Tropical Forest Soil	LSTRRPASIGLRLLAAFTGIVGLEVVRYFAYRPEYQADASLWFLIAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALAPLISPR*
Ga0137391_110553462	3300011270	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFQWWTLPDTAWKAVIAAALTEAGLPPTARIVAYAVAALIKGLAPLIAPS*
Ga0137363_103636362	3300012202	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPTARIVAYAVAALIKGLAPLIAPR*
Ga0137374_1006374010	3300012204	Vadose Zone Soil	LPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPHTAWKALIAAALTEAGLPPAAGIVAKALVALLKALAPLIAPR*
Ga0137362_109668731	3300012205	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFQWWTLPDTAWKALIAAALSEAGLPPTARIVAYAVAALIKGLAPLIAPR*
Ga0137380_101863213	3300012206	Vadose Zone Soil	LAARQGRRESVALRVLAAFVGIVGLEVVRYFTFRPEYKADPSLWLVVAGSIAFNIWFQWWTLPNTAWKALMAAALAQAGLPPAARIVATAVVALGKGLAPLLAPR*
Ga0137387_100146335	3300012349	Vadose Zone Soil	VSRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIVAGSIAFNFWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANALVALMSGLAPLIAPR*
Ga0137386_107703522	3300012351	Vadose Zone Soil	VSRRHSVSVRILAALGGIVGLEVIRYFTFSAEYQVDPSLWLIVAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANAVVALMAGLAPLIAPR*
Ga0137360_100448244	3300012361	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFRWWTLPDTAWKALIAAALTEAGLPPTARIVAYAVAALIKGLAPLIAPR*
Ga0137361_101109382	3300012362	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFRWWTLPDTAWKALIAAALTEAGLPPTARIVAYAVAALIKGLAPLIAPS*
Ga0137361_106633153	3300012362	Vadose Zone Soil	LSTRRSASIGLRLLAAFIGIVGLEVVRAHPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPPTARIVSKAVVALLTALAPLIAPR*
Ga0137390_116230552	3300012363	Vadose Zone Soil	RSDAPLAAHRSRQESVTLRVLAALVGIISLEVIRYYTFRSDYEADSSLWLIIAGSVAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAARIFANAVVVLVKALAPLIAPR*
Ga0137397_102385644	3300012685	Vadose Zone Soil	LSTRRSASIGLRLLAAFIGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTFLKALIAAVLSEAGLPATARIVSKAVVALLTALAPLIAPR*
Ga0137397_102636232	3300012685	Vadose Zone Soil	LPARQPPSLALRTLAALAGIVGLELVRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAARIVAKAFVALLKALAPLIAPR*
Ga0137394_103611222	3300012922	Vadose Zone Soil	LSARASRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIIAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANAVVALMTGLAPLIAPR*
Ga0137407_106631471	3300012930	Vadose Zone Soil	LSARVSRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIIAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANAVGALMTGLAPLIAPR*
Ga0137407_122554851	3300012930	Vadose Zone Soil	LPARRAQSPTLRVLAAFIGIVGLEVVRYVAFRSEYQTEPSLWFVVAGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAARIVAKAVVGLLKALAPLIAPR*
Ga0137410_113655122	3300012944	Vadose Zone Soil	LSARASRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIIAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANAVGALMTGLAPLIAPR*
Ga0126375_104429861	3300012948	Tropical Forest Soil	STRRPASIGLRLLAAFTGIVSLEVVRYFAYRPEYQADPSLWFLIAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALAPLISPR*
Ga0126369_106748811	3300012971	Tropical Forest Soil	LSTRRPASIGLRLLAAFTGIVGLEVVRYFAYTSEYQADSTLWFLIAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALVPLISPR*
Ga0164304_108976022	3300012986	Soil	LPAHQPPSLALRTLAALAGIVSLELVRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAARIVAKAILALLTALAPLIAPR*
Ga0134075_103613752	3300014154	Grasslands Soil	LSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLTALSPLIAPR
Ga0137409_100227421	3300015245	Vadose Zone Soil	VSRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIIAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANAVGALMTGLAPLIAPR*
Ga0184634_102773852	3300018031	Groundwater Sediment	LPAHRKRQETVTLRVLAALFGIVTLEVIRYYTFRADYETDPSLWLIIGGSVAFNIWLQWWTLPDTAWKALIAAALTEAGLPPAARIFANAIVVLVKALAPLIAPR
Ga0184626_100244942	3300018053	Groundwater Sediment	LPAGRPQSPALRVLAAFIGIVGLEAVRYVAFRSEYQTDPSLWFVVAGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAARIIAKALVALLKALAPLIAPR
Ga0184626_100409034	3300018053	Groundwater Sediment	LPAHRKRQETVTLRVLAALFGIVTLEVIRYYTFRADYETDPSLWLIIGGSVAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAARIFANAHCRPHQCARAAHRPALG
Ga0184637_101983682	3300018063	Groundwater Sediment	VGIAALEVIRYYTFRADYEADPSLWLIIGGSVAFNIWFQWWTLPDTAWKALIAAVLSEAGLPPAARIFASAIVVLFRALAPLITPR
Ga0184640_100453908	3300018074	Groundwater Sediment	LPAHRKRQETVTLRVLAALFGIVTLEVIRYYTFRADYETDPSLWLIIGGSVAFNIWLQWWTLPDTAWKALIAAALTEAGLPPAARIF
Ga0184640_105012272	3300018074	Groundwater Sediment	LPAHRKRQETVALRVLASLFGIVTLEVIRYYTFRADYETDPSLWLIIGGSVAFNIWFQWWSLPDTAWKALIAAALTEAGLPPAARIF
Ga0184612_102560412	3300018078	Groundwater Sediment	FGIVSLEVIRYYTFRADYEADPSLWLIIGGSVAFNIWFQWWTLPDTAWKALIAAALTEAGLPPASRIFANAILVLVKALAPLIAPR
Ga0184612_103307221	3300018078	Groundwater Sediment	LPAHRKRQETVTLRVLAALFGIVTLEVIRYYTFRADYETDPSLWLIIGGSVAFNIWLQWWTLPDTAWKALIAAALTEAGLPPAARIFANAIVVLTKALAPLIAPR
Ga0184627_100591772	3300018079	Groundwater Sediment	LPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAAGIVAKALVALLKALAPLIAPR
Ga0184627_105531702	3300018079	Groundwater Sediment	VTLRVLASLFGIVTLEIIRYYTFRADYEADPSLWLIIGGSVAFNIWLQWWTLPDTAWKALITAALTEAGLPPAARIFANAIVVLVKALAPLIAPR
Ga0184627_106844891	3300018079	Groundwater Sediment	LPAHRSRQGSVTLRVLAALVGIISLEVIRYYTFRADYEADSSLWLIIAGSVAFNVWFQWWTLPDTVWKALIAAALTEAGLPPAARIFANAAVVLVKALVPLIAPR
Ga0184629_104432491	3300018084	Groundwater Sediment	LPPHRKRQEAVTLRLLASLFGIVTLEVIRYYTFRADYETDPSLWLIIGGSIAFNIWFQWWTLPDTAWKALIAAARAEAGLPPAARIFANATVVLAKALAPLIAPR
Ga0066667_111128582	3300018433	Grasslands Soil	VSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLTALSPLIAPRP
Ga0137408_14742922	3300019789	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFRWWTLPDTAWKALIAAALSEAGLPPTARIVAYAVAALIKGLAPLIAPR
Ga0210379_101166832	3300021081	Groundwater Sediment	LPARRAQSPTLRVLAAFIGIVGLEVVRYVAFRSEYQTEPSLWFVVAGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAARIVAKAVVGLLKALAPLIAPR
Ga0207662_106454682	3300025918	Switchgrass Rhizosphere	LPARQPPSLALRTLAALAGIVGLELVRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAARIVAKAIVALLKALAPLISPR
Ga0207681_112764532	3300025923	Switchgrass Rhizosphere	LPARQPPSLALRTLAALAGIVGLELVRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVRKALIAAALTEAGLPPAARIVAKAIVALLKALAPLIAPR
Ga0207691_103413573	3300025940	Miscanthus Rhizosphere	LPAHRKRQETVTLRVLAALVGIIVLEVTRYYAFRAEYETDSSLWLIIGGSVAFNVWFQWWTLPDTAWKALIAAVLTEAGLPLAARILTNAVVVLIKALAPLIAPR
Ga0209438_10969242	3300026285	Grasslands Soil	VSRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIIAGSIAFNLWFQWWTLPDSALKSLIAAALTQTGLPPAARIVANAVVALMAGLAPLIAPR
Ga0209237_10389082	3300026297	Grasslands Soil	LAARQGRRESVALRVLAAFVGIVGLEVVRYFTFRPEYQADPSLCLVVAGSIAFNIWFQWWTLPNTALKALIAAALAQAGLPLAARIVATAVVALGKGLAPLLAPR
Ga0209266_11142181	3300026327	Soil	VSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLT
Ga0209803_11762292	3300026332	Soil	AFVGIVGLEVVRYFTFRPEYQADPSLCLVVAGSIAFNIWFQWWTLPNTALKALIAAALAQAGLPLAARIVATAVVALGKGLAPLLAPR
Ga0209378_10435913	3300026528	Soil	LPARQPTSLALRVLAALIGIIGLEVVRYFAFRLEYQADPSLWLLIVGSIAFNIWFQWWNLPDTAWKALIAAALTEAGLPPAARIVAKAVGALLTALAPLIAPR
Ga0209157_10611902	3300026537	Soil	LPARQPTSLALRVLAALIGIIGLEVVRYFAFRLEYQADPSLWLLIVGSIAFNIWFQWWNLPDTAWKALIAAALNEAGLPPAARIVAKAVGALLTALAPLIAPR
Ga0209157_11664361	3300026537	Soil	SDAPLPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTAWKALIAAALTEARLPPAAGIVAKALVALLKALAPLIAPR
Ga0209376_10101109	3300026540	Soil	LSTRRSASIGLRLLAAFVGIVGLEVVRYFAYRSEYQADPSLWLLIAGSIAFNSWFQWWTLPDTSLKALIAAVLSEAGLPTASRIVAKAVVALLTALSPLIAPRP
Ga0209899_10048995	3300027490	Groundwater Sand	LPARRPESPTLRVLAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAAGIVAKALVALLKALAPLIAPR
Ga0208185_11647681	3300027533	Soil	PESPTLRVFAAFIGIVGLEVVRYIAFRSEYQADPSLWFVIVGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAAGIVAKALVALLKALAPLIAPR
Ga0209388_10035842	3300027655	Vadose Zone Soil	VSRRHSVAVRVLAALGGIVGLEVIRYFTFSAEYQVDPSLWLIIAGSIAFNLWFQWWTLLDSALKSLIAAALTQTGLPPAARIVANAVVALMTGLAPLIAPR
Ga0209388_10091852	3300027655	Vadose Zone Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFRWWTLPDTTWKALIAAALTEAGLPPTARIVAYAAAALIKGLAPLIAPR
Ga0209481_102454231	3300027880	Populus Rhizosphere	LSTRRPASIALRLLAAFTGIVGLEVVRYFAYRPEYQADPSLWFLIAGSIAFNSWFQWWTLPDTSAKALIAAILSEAGLPAASRIVAKAIVALLTALAPLISPR
Ga0209382_115977432	3300027909	Populus Rhizosphere	RVLGALVGIVILEVTRYVTFRSEYEADPSLWLFIGGSVAFNLWFQWWTLPDKALKSLIAAMLAEAGLPATARIVANAIVALGRGLAPLLAPH
Ga0310886_108387711	3300031562	Soil	LSDAPLPARQPPSLALRTLAALAGIVSLELVRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAARIVAKAIVALLTALAPLIAPR
Ga0307469_122073002	3300031720	Hardwood Forest Soil	LPARQPFSLALRTLAALAGIVGLELVRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAARIVAKAIVALLKALAPLIAPR
Ga0307468_1002066373	3300031740	Hardwood Forest Soil	LPAHRKRQETVTLRVLAALVGIVVLEVIRYYTFRADYETDSSLWLIIGGSVAFNVWFQWWTLPETAWKALIAAVLTEAGLPPAARIFANAVAVLIKALAPLIAPR
Ga0307468_1010192482	3300031740	Hardwood Forest Soil	STRRPASIGLRLLAAFTGIVSLEVVRYFAYRPEYQADPSLWFLIAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALAPLISPR
Ga0318514_104546641	3300032066	Soil	LRVLAALAGIVGLELIRYFSFSSEYKADPSLWFVIAGSIAFNIWFQWWTLPDAAWKALIAAALTQAGLPPAARIVANAIIGLLKALAPLISPR
Ga0307471_1006045212	3300032180	Hardwood Forest Soil	LPARRRRRESVALRVLAAFVGISGLEVVRYFTYSSEYQADPSLWLVITGSIAFNIWFQWWTLPDTAWKALIAAALTEAGLPPTARIVAYAVAALIKGLAPLIAPR
Ga0307471_1008222162	3300032180	Hardwood Forest Soil	LSTRRPASIGLRLLAAFTGIVGLEIVRYFAYRPEYQAEPSLWFLVAGSIAFNSWFQWWTLPDTSLKALIAAILSEAGLPAASRIVAKAVVALLTALTPLISPR
Ga0307471_1008687453	3300032180	Hardwood Forest Soil	LPARQPASLALRTLAALAGIVGLESIRYLAFRSEYQADPALWLVIAGSIAFNIWFQWWTLPDTVWKALIAAALTEAGLPPAARIVAKAIVALLKALAPLIAPR
Ga0326726_100155968	3300033433	Peat Soil	AGIVGLELVRYLAFRSEYQADPALWLVIAGSIAFNIWPPAARIVAKAIVALLKALAPLIAPR
Ga0364940_0151510_3_290	3300034164	Sediment	LPAHRKRQETVTLRVLASLVGIAILEVIRYYTFRADYEADPSLWLIIGGSVAFNIWFQWWTLPDTAWKALIAAALTEAGLPPAARILANAIVVLVK
Ga0364934_0066918_657_974	3300034178	Sediment	LPAHRKRQETVTLRVLASLFGIVTLEIIRYYTFRADYEADSSLWLIIGGSVAFNIWFQWWTLPDTAWKALIAAVLTEAGLSPAARIATNAIVVLGKALAPLIAPR
Ga0364941_098928_25_288	3300034417	Sediment	LAGIVGLEMIRYFTFSSEYQVDHSLWLIIAGSIAFNVWFQWWTLPDTALKSLIAAALTQTGLPPAARIVANAVVALMTGLAPLITPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086314

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences