NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F086599

Metagenome Family F086599

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086599
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 59 residues
Representative Sequence MINNNDLDFFTRNAQQDKRARQIQDQIIAERKIQMNNVSIEILHEIIKEAQQRAERENG
Number of Associated Samples 72
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 14.55 %
% of genes near scaffold ends (potentially truncated) 19.09 %
% of genes from short scaffolds (< 2000 bps) 73.64 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.727 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(37.273 % of family members)
Environment Ontology (ENVO) Unclassified
(85.455 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(82.727 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 63.22%    β-sheet: 0.00%    Coil/Unstructured: 36.78%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF01176eIF-1a 47.27
PF14743DNA_ligase_OB_2 18.18
PF01970TctA 3.64
PF06418CTP_synth_N 2.73
PF07690MFS_1 1.82
PF03401TctC 0.91
PF01522Polysacc_deac_1 0.91
PF08291Peptidase_M15_3 0.91
PF01165Ribosomal_S21 0.91
PF07331TctB 0.91
PF05050Methyltransf_21 0.91
PF00171Aldedh 0.91
PF13392HNH_3 0.91
PF09834DUF2061 0.91
PF16861Carbam_trans_C 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG0361Translation initiation factor IF-1Translation, ribosomal structure and biogenesis [J] 47.27
COG1784TctA family transporterGeneral function prediction only [R] 3.64
COG3333TctA family transporterGeneral function prediction only [R] 3.64
COG0504CTP synthase (UTP-ammonia lyase)Nucleotide transport and metabolism [F] 2.73
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 0.91
COG0726Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 familyCell wall/membrane/envelope biogenesis [M] 0.91
COG0828Ribosomal protein S21Translation, ribosomal structure and biogenesis [J] 0.91
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 0.91
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 0.91
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 0.91


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.73 %
All OrganismsrootAll Organisms27.27 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001851|RCM31_10051495Not Available617Open in IMG/M
3300004240|Ga0007787_10085487Not Available1457Open in IMG/M
3300004240|Ga0007787_10458542Not Available637Open in IMG/M
3300004240|Ga0007787_10482400Not Available620Open in IMG/M
3300004240|Ga0007787_10625605Not Available539Open in IMG/M
3300005580|Ga0049083_10089127All Organisms → Viruses → Predicted Viral1073Open in IMG/M
3300005582|Ga0049080_10007851All Organisms → cellular organisms → Bacteria → Proteobacteria3709Open in IMG/M
3300005583|Ga0049085_10028355Not Available2088Open in IMG/M
3300005805|Ga0079957_1016431All Organisms → cellular organisms → Bacteria → Proteobacteria5323Open in IMG/M
3300005805|Ga0079957_1078082All Organisms → cellular organisms → Bacteria → Proteobacteria1883Open in IMG/M
3300007974|Ga0105747_1068664All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1070Open in IMG/M
3300009026|Ga0102829_1303735Not Available532Open in IMG/M
3300009068|Ga0114973_10015084All Organisms → cellular organisms → Bacteria4888Open in IMG/M
3300009068|Ga0114973_10230066Not Available1005Open in IMG/M
3300009152|Ga0114980_10001817Not Available15221Open in IMG/M
3300009152|Ga0114980_10006393Not Available7757Open in IMG/M
3300009152|Ga0114980_10016263All Organisms → cellular organisms → Bacteria → Proteobacteria4689Open in IMG/M
3300009152|Ga0114980_10085154Not Available1894Open in IMG/M
3300009152|Ga0114980_10454185Not Available732Open in IMG/M
3300009154|Ga0114963_10003440All Organisms → cellular organisms → Bacteria → Proteobacteria10820Open in IMG/M
3300009154|Ga0114963_10047613All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2755Open in IMG/M
3300009154|Ga0114963_10220598All Organisms → cellular organisms → Bacteria → Proteobacteria1088Open in IMG/M
3300009155|Ga0114968_10009780Not Available6919Open in IMG/M
3300009155|Ga0114968_10015480All Organisms → cellular organisms → Bacteria5356Open in IMG/M
3300009155|Ga0114968_10103573Not Available1736Open in IMG/M
3300009159|Ga0114978_10138501Not Available1575Open in IMG/M
3300009160|Ga0114981_10027941Not Available3223Open in IMG/M
3300009161|Ga0114966_10137876Not Available1600Open in IMG/M
3300009161|Ga0114966_10218678Not Available1195Open in IMG/M
3300009161|Ga0114966_10281174All Organisms → cellular organisms → Bacteria → Proteobacteria1014Open in IMG/M
3300009180|Ga0114979_10372644Not Available839Open in IMG/M
3300009181|Ga0114969_10230761Not Available1121Open in IMG/M
3300009187|Ga0114972_10558462Not Available643Open in IMG/M
3300010354|Ga0129333_10152548Not Available2119Open in IMG/M
3300010354|Ga0129333_10331347Not Available1357Open in IMG/M
3300010370|Ga0129336_10080288Not Available1925Open in IMG/M
3300010885|Ga0133913_12581798Not Available1234Open in IMG/M
3300010885|Ga0133913_12880427All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1154Open in IMG/M
3300012012|Ga0153799_1015413Not Available1599Open in IMG/M
3300013004|Ga0164293_10015153Not Available6472Open in IMG/M
3300013004|Ga0164293_10228212Not Available1328Open in IMG/M
3300013004|Ga0164293_10251308Not Available1248Open in IMG/M
3300013004|Ga0164293_10665382Not Available670Open in IMG/M
3300013004|Ga0164293_11053566Not Available504Open in IMG/M
(restricted) 3300013126|Ga0172367_10007185All Organisms → cellular organisms → Bacteria12836Open in IMG/M
(restricted) 3300013131|Ga0172373_10040489Not Available4226Open in IMG/M
(restricted) 3300013131|Ga0172373_10310484Not Available1012Open in IMG/M
(restricted) 3300013131|Ga0172373_10815241Not Available544Open in IMG/M
(restricted) 3300013137|Ga0172375_10500763Not Available810Open in IMG/M
(restricted) 3300014720|Ga0172376_10684444Not Available556Open in IMG/M
3300017722|Ga0181347_1172575All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon581Open in IMG/M
3300017785|Ga0181355_1354873Not Available538Open in IMG/M
3300017788|Ga0169931_10007637All Organisms → cellular organisms → Bacteria15986Open in IMG/M
3300017788|Ga0169931_10590060Not Available757Open in IMG/M
3300017788|Ga0169931_10854143Not Available578Open in IMG/M
3300019784|Ga0181359_1085269All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1177Open in IMG/M
3300020141|Ga0211732_1579866Not Available682Open in IMG/M
3300020151|Ga0211736_10816252Not Available584Open in IMG/M
3300020159|Ga0211734_10291209Not Available895Open in IMG/M
3300020160|Ga0211733_11164038Not Available901Open in IMG/M
3300020161|Ga0211726_10069685Not Available990Open in IMG/M
3300020162|Ga0211735_10485371Not Available916Open in IMG/M
3300020172|Ga0211729_11217759Not Available778Open in IMG/M
3300020172|Ga0211729_11456754Not Available682Open in IMG/M
3300020205|Ga0211731_10759172Not Available787Open in IMG/M
3300020205|Ga0211731_11319717Not Available861Open in IMG/M
3300021962|Ga0222713_10341838Not Available939Open in IMG/M
3300021963|Ga0222712_10173581All Organisms → cellular organisms → Bacteria1434Open in IMG/M
3300022179|Ga0181353_1024026Not Available1610Open in IMG/M
3300022407|Ga0181351_1203839All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon658Open in IMG/M
3300022752|Ga0214917_10025308All Organisms → cellular organisms → Bacteria4668Open in IMG/M
3300023179|Ga0214923_10133767Not Available1588Open in IMG/M
3300027586|Ga0208966_1189513Not Available529Open in IMG/M
3300027608|Ga0208974_1110734Not Available724Open in IMG/M
3300027608|Ga0208974_1164728Not Available554Open in IMG/M
3300027688|Ga0209553_1197905Not Available655Open in IMG/M
3300027697|Ga0209033_1038390Not Available1790Open in IMG/M
3300027734|Ga0209087_1112976All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1135Open in IMG/M
3300027736|Ga0209190_1126534Not Available1139Open in IMG/M
3300027741|Ga0209085_1007760All Organisms → cellular organisms → Bacteria5484Open in IMG/M
3300027741|Ga0209085_1022267All Organisms → cellular organisms → Bacteria → Proteobacteria3041Open in IMG/M
3300027741|Ga0209085_1054679Not Available1839Open in IMG/M
3300027747|Ga0209189_1408862Not Available502Open in IMG/M
3300027759|Ga0209296_1243363Not Available744Open in IMG/M
3300027759|Ga0209296_1412816Not Available502Open in IMG/M
3300027760|Ga0209598_10158892Not Available995Open in IMG/M
3300027760|Ga0209598_10378457Not Available525Open in IMG/M
3300027770|Ga0209086_10038116All Organisms → cellular organisms → Bacteria → Proteobacteria2796Open in IMG/M
3300027782|Ga0209500_10000333Not Available41662Open in IMG/M
3300027782|Ga0209500_10001573Not Available16998Open in IMG/M
3300027782|Ga0209500_10077687Not Available1692Open in IMG/M
3300027782|Ga0209500_10123265Not Available1252Open in IMG/M
3300027782|Ga0209500_10362117Not Available595Open in IMG/M
3300027804|Ga0209358_10022764Not Available3946Open in IMG/M
3300027804|Ga0209358_10022949All Organisms → cellular organisms → Bacteria → Proteobacteria3927Open in IMG/M
3300027804|Ga0209358_10054725Not Available2345Open in IMG/M
3300027963|Ga0209400_1084106Not Available1526Open in IMG/M
3300027971|Ga0209401_1166921Not Available847Open in IMG/M
3300031746|Ga0315293_10417830All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1052Open in IMG/M
3300031772|Ga0315288_10206563All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2129Open in IMG/M
3300031963|Ga0315901_10316893Not Available1285Open in IMG/M
3300031999|Ga0315274_10146097All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon3007Open in IMG/M
3300032401|Ga0315275_11965194All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon617Open in IMG/M
3300033233|Ga0334722_10012338Not Available7760Open in IMG/M
3300033993|Ga0334994_0383335Not Available685Open in IMG/M
3300034066|Ga0335019_0863540Not Available506Open in IMG/M
3300034101|Ga0335027_0409620Not Available877Open in IMG/M
3300034102|Ga0335029_0318766All Organisms → cellular organisms → Bacteria → Proteobacteria973Open in IMG/M
3300034272|Ga0335049_0224830Not Available1305Open in IMG/M
3300034284|Ga0335013_0673056Not Available594Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake37.27%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater20.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake12.73%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater10.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic5.45%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment4.55%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient2.73%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake1.82%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.82%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton0.91%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.91%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.91%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.91%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001851Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3bEnvironmentalOpen in IMG/M
3300004240Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005583Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009154Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009160Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300009187Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013137 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1mEnvironmentalOpen in IMG/M
3300014720 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35mEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300027586Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027688Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027697Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027747Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027760Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027804Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300033233Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottomEnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034272Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
RCM31_1005149523300001851Marine PlanktonMIKDNDLEFFTRNAQKDKRARQIQDQIIRERKIQMNEVTIEILHEIIREAQKRAERENG*
Ga0007787_1008548723300004240Freshwater LakeMIKDNDLDFFTRNAQQDKRARQIQDQIIEERKIKMNEVAVEILHEIIKESQQRAERENG*
Ga0007787_1045854223300004240Freshwater LakeMIKDSDLDFFTRNAQKDKRARQIQDQLIAERKIRMNDVTIEILHEIIKEAQQKAEQENA*
Ga0007787_1048240023300004240Freshwater LakeMINNKDLDFFTRNAQQDKRARQIQDQIIEERKIRMNEVAIEILHEIIKESQQRAERENG*
Ga0007787_1062560523300004240Freshwater LakeMIKDSDLEFFTRNAQKDKRARQIQDQIIAERKIHMNNVTIEILHEIIKEAEQRAERENA*
Ga0049083_1008912743300005580Freshwater LenticTRNAKQDKRAREIQDQIIAERKIKMNEISIEILHEIIREAQTRAERENG*
Ga0049080_1000785163300005582Freshwater LenticMIKDSDLEFFTKNAQRDKRARQIQDEIIAERKIQMDKISIEILHEIIKEAQERAERENG*
Ga0049085_1002835523300005583Freshwater LenticMKDKELNDLDFFTRNAQQDKRARKIQDQIIAERKIQMNKISIEILHGIIKEAQKRAERENG*
Ga0079957_101643153300005805LakeMIKDNDLEFFTRNAQKDKRARQIQDQIIAERKIQMDKISIEILHEIIKEAQQRAREENA*
Ga0079957_107808243300005805LakeMIKNNDYEFFTRNAQKDKRARQIQDQIIVERKIRMNDVTIEILHEIIREAEQRAERENA*
Ga0105747_106866423300007974Estuary WaterMKDKELNDLDFFTRNAQQDKRARKIQNQIITERKIQMNKISIEILHGIIKEAQKRAERENG*
Ga0102829_130373513300009026EstuarineKELNDLDFFTRNAQQDKRARKIQDQIITERKIQMNKISIEILHRIIKEAQKRAERENG*
Ga0114973_1001508453300009068Freshwater LakeMIKDNDYEFFTRNAQKDKRARQIQDQIIEERKIRMNDVTIEILHEIIREAEQRAERENG*
Ga0114973_1023006633300009068Freshwater LakeMINNKDLDFFTRNAQQDKRARQIQDQIIEERKIKMNEVAIEILHEIIKESQQRAERENG*
Ga0114980_10001817223300009152Freshwater LakeMINNNDLDFFTRNAQQDKRARQIQDRIIAERKIEMNKISIEILHEIIKEAQQRAERENG*
Ga0114980_1000639373300009152Freshwater LakeMIKDSDLEFFTKNAQKDKRARQIQDQLIAERKIRMNDVTIEILHEIIKEAQQRAEQENV*
Ga0114980_1001626333300009152Freshwater LakeMIKDNDYEFFTRNAQKDKRARQIQDKIIAERKIHMNDVTIEILHEIIREAEQRAEQENN*
Ga0114980_1008515443300009152Freshwater LakeMINNNDLDFFTRNAKQDKRARQIQDQIIAERKIQMNNVSIEILHEIIKEAQQRAERENG*
Ga0114980_1045418523300009152Freshwater LakeMISNKDLDFFTRNAQQDKRARQIQDRIIEERKIQMNAVSIEILHEIIKEAQQRAERENG*
Ga0114963_1000344053300009154Freshwater LakeMIKDNNLEFFTKRAQQNKRARQIQDQIIEERKIRMNDVTIEILHEIIREAQQRAERENDKRRSIKISG*
Ga0114963_1004761333300009154Freshwater LakeMIKDNNLEFFTKRAQLDKRARQIQTEIIEERKIHMNEVTIDILHEIIREAQQRAERENG*
Ga0114963_1022059823300009154Freshwater LakeMTKDNNLEFFTKRAQLDKRARQIQTEILEERKILMNEVTVEILHEIIREAQQRAERENG*
Ga0114968_1000978033300009155Freshwater LakeMIDKDLDFFTRNAIQDKRAREIQDQIIAERKIKMNEISIEILHEIIREAQTRAERENG*
Ga0114968_1001548043300009155Freshwater LakeMINNNDLDFFTRNAQQDKRARQIQDQIIEERKIEMNKISIEILHEIIKEAQQRAERENG*
Ga0114968_1010357313300009155Freshwater LakeMISNKDLDFFTRNAQQDKRARQIQDQIIEEKKIKMNNVSIEILHEIIKEAQQRAERENG*
Ga0114978_1013850143300009159Freshwater LakeMINNNDLDFFTRNAQQDKRARQMQDQIIEERKIKMNNVSIEILHEIIKEAQQRAERENG*
Ga0114981_1002794113300009160Freshwater LakeKRMISNKDLDFFTRNAQQDKRARQIQDRIIEERKIQMNAVSIEILHEIIKEAQQRAERENG*
Ga0114966_1013787643300009161Freshwater LakeMIDNDLDFFTRNAQQDKRVRKIQDQIIAERKIQMNEISIEILHEIIREAQTRAERENG*
Ga0114966_1021867833300009161Freshwater LakeMINYKDLDFFTRNAQQDKRARQIQDQIIEERKIKMNEVAIEILHEIIKESQQRAERENG*
Ga0114966_1028117413300009161Freshwater LakeKILKQKKTMINNDLDFFTRNAQQDKRARQIQDQIIEERKIRMNDISIEILHEIIKEAQQRAERENG*
Ga0114979_1037264433300009180Freshwater LakeMINNNDLDFFTRNAQQDKRARQIQDQIIEERKIKMNNVSIEILHEIIKEAQQRAERENG*
Ga0114969_1023076143300009181Freshwater LakeMINNNDLDFFTRNAQQDKRARQIQDQIIEERKIQMNNVSIEILHEIIKEAQQRAE
Ga0114972_1055846223300009187Freshwater LakeMISNKDLDFFTRNAQQDKRARQIQDRIIEERKIRMNDISIEILHEIIKEAQQRAERENG*
Ga0129333_1015254843300010354Freshwater To Marine Saline GradientMIKDNDLEFFTRNAQRDKRARQIQDQIIAERKIQLDKISIEILHEIIKEAEQRAKEDNA*
Ga0129333_1033134733300010354Freshwater To Marine Saline GradientMIKNNDYEFFTRNAQKDKRARQIQDKIIAERKIRMNDVTIEILHEIIREAEQRAEQENG*
Ga0129336_1008028823300010370Freshwater To Marine Saline GradientMIKDNDYEFFTRNAQKDKRARQIQDKIIAERKIRMNDVTIEILHEIIREAEQRAEQENG*
Ga0133913_1258179843300010885Freshwater LakeMINYKDLDFFTRNAQQDKRARQIQDQIIEERKIKMNEVAIEILHEIIKESQQRAERE
Ga0133913_1288042723300010885Freshwater LakeMINNNDLDFFTRNAQQDKRARQIQDRIIAERKIKMNNVSIEILHEIIKEAQQRAERENG*
Ga0153799_101541353300012012FreshwaterMIDNNLDFFTRNAKQDKRAREIQDQIIAEKKIKMNEISIEILHEIIREAQTRAERENG*
Ga0164293_1001515383300013004FreshwaterMSTQKDLEFFTRNAKQDKKAREIQDQIIAERKIKMNEISIEILHEIIREAQTRAERENG*
Ga0164293_1022821243300013004FreshwaterMIDNNLDFFTRNAKQDKRAREIQDQIIAERKIKMNEISIEILHEIIREAQTRAERENG*
Ga0164293_1025130833300013004FreshwaterMINNNDLDFFTRNAQQDKRARQIQDRIIAERKIQMNNVSIEILHEIIKEAQQRAERENG*
Ga0164293_1066538233300013004FreshwaterKILKQEKRMISNKDLDFFTRNAQQDKRARQIQDRIIEERKIQMNAVSIEILHEIIKEAQQRAERENG*
Ga0164293_1105356623300013004FreshwaterMISNKDLDFFTRNAQQDKRARQIQDRIIAERKIEMNNVSIEILHEIIKEAQQRAERENG*
(restricted) Ga0172367_1000718563300013126FreshwaterMIKDSDLEFFTRNAKKDKRARQIQDQIMAEKKIQMDKVSIEILQEIIKEAQQRVREDNA*
(restricted) Ga0172373_1004048923300013131FreshwaterMSSREDLTFFTRNAQQDKRARQIQDEIIAERKIQMDKISIEILHEIIKEAEQRAREENA*
(restricted) Ga0172373_1031048443300013131FreshwaterMIKDSDLEFFTKNAKLDKRARQIQDQIIAERKIQMDKVSIEILHEIIKEAQQRARVENA*
(restricted) Ga0172373_1081524123300013131FreshwaterMIKDNDLEFFTRNAQKDKRARQIQDQLIAEKKIQMDKVSIEILHEIIKEAEQRAREENA*
(restricted) Ga0172375_1050076313300013137FreshwaterLEFFTKNAKLDKRARQIQDQIIAERKIQMDKVSIEILHEIIKEAQQRARVENA*
(restricted) Ga0172376_1068444423300014720FreshwaterMIKDSDLEFFTKNAQLDKRARQIQDQIIAERKIQMDKVSIEILHEIIREAQQRAREENA*
Ga0181347_117257533300017722Freshwater LakeSKDLDFFTRNAQQDKRARKIQDQIIAERKIQMNKISIEILHGIIKEAQKRAERENG
Ga0181355_135487323300017785Freshwater LakeMVQMKDKGPNDLDFFTRNAQQDKRAREIQDQIIAERKIQMNKISIEILHGIIKEAKKKAEREFMK
Ga0169931_10007637113300017788FreshwaterMSTQKDLEFFTRNAQQDKRAKQIQDQIIAEKKIQMDKVSIEILHEIIKEPQQRAREENA
Ga0169931_1059006033300017788FreshwaterMIKDNDLEFFTRNAQRDKRARQIQDQLIAEKKIEMDKVSIEILHEIIKEAEQRAREENA
Ga0169931_1085414333300017788FreshwaterMIKYSDLEFFTKNAQLDKRARQIQDQLIAERKIQMDKVSIEILHEIIKEAEQRAREENA
Ga0181359_108526943300019784Freshwater LakeMKEESSKDLDFFTRNAQQDKRARKIQDQIIAERKIQMNKISIEILHGIIKEAQKRAEREN
Ga0211732_157986623300020141FreshwaterMIDNDLDFFTRNAKQDKRAREIQDRIIAERKIEMNKISIEILHEIIKEAQQRAERENG
Ga0211736_1081625223300020151FreshwaterMINNNDLDFFTRNAQQDKRARQIQDRIIAERKIQMNNVSIEILHEIIREAQTRAERENG
Ga0211734_1029120913300020159FreshwaterMINNNDLDFFTRNAQQDKRARQIQDRIIAERKIQMNNISIEILHEIIKEAQQRAERENG
Ga0211733_1116403823300020160FreshwaterMIDNNLDFFTRNAKQDKRAREIQDQIIAERKIKMNEISIEILHEIIREAQQRAERENG
Ga0211726_1006968533300020161FreshwaterMIKDNDLDFFTRNAQQDKRARQIQDRIIAERKIEMNKISIEILHEIIKEAQQRAERENG
Ga0211735_1048537133300020162FreshwaterMIDKDLDFFTRNAKQDKRAREIQDQIIAERKIKMNAVSIEILHEIIKEAQQRAERENG
Ga0211729_1121775923300020172FreshwaterMINNNDLDFFTRNAKQDKRAREIQDRIIAERKIEMNKISIEILHEIIKEAQQRAERENG
Ga0211729_1145675413300020172FreshwaterINNNDLDFFTRNAKQDKRAREIQDQIIEERKIEMNKISIEILHEIIKEAQHRAERENG
Ga0211731_1075917213300020205FreshwaterMISNKDLDFFTRNAQQDKRARQIQDRIIEERKIQMNAVSIEILHEIIKEAQQRAERENG
Ga0211731_1131971713300020205FreshwaterMIDNDLDFFTRNAQQDKRARQIQDRIIEERKIEMNKISIEILHEIIKEAQHRAER
Ga0222713_1034183823300021962Estuarine WaterMIKDSDLEFFTKNAQRDKRARQIQDQIIAERKIQLDKISIEILHEIIKEAEQRAKEDNA
Ga0222712_1017358143300021963Estuarine WaterMINNKDLDFFTRNAQQDKRARQIQDQIIEERKIKMNEVAIEILHEIIKESQQRAERENG
Ga0181353_102402633300022179Freshwater LakeMIKDSDLDFFTRNAQKDKRARQIQDQLIAERKIRMNDVTIEILHEIIKEAQQKAEQENV
Ga0181351_120383923300022407Freshwater LakeMKDKELNDLDFFTRNAQQDKKARKIQDQIIAERKIQMNEISIEILHGIIKEAQKRAEREN
Ga0214917_1002530883300022752FreshwaterMIEDNYLEFFTKRAQLDKRARQIQDQIIEERKSHMNEITVEILHEIIREAQQRAERE
Ga0214923_1013376743300023179FreshwaterMINNNDLDFFTRNAQQDKRARQIQDQIIEERKIEMNKISIEILHEIIKEAQQRAERENG
Ga0208966_118951333300027586Freshwater LenticMINNKDLDFFTRNAQQDKRARQIQDRIIEERKIRMNDISIEILHEIIKEAQQRAEREN
Ga0208974_111073413300027608Freshwater LenticFFTRNAKQDKRAREIQDQIIAERKIQMNEISIEILHEIIREAQTRAERENG
Ga0208974_116472833300027608Freshwater LenticMINNKDLDFFTRNAQQDKRARQIQDRIIAERKIQMNNVSIEILHEIIREAQTRAERENG
Ga0209553_119790523300027688Freshwater LakeMIDNNLDFFTRNAKQDKRAREIQDQIIAERKIKMNEISIEILHEIIREAQTRAERENG
Ga0209033_103839023300027697Freshwater LakeMIKDSDLDFFTRNAQKDKRARQIQDQLIAERKIRMNDVTIEILHEIIKEAEQRAERENA
Ga0209087_111297633300027734Freshwater LakeMISNKDLDFFTRNAQQDKRARQIQDRIIAERKIEMNKISIEILHEIIKEAQQRAERENG
Ga0209190_112653413300027736Freshwater LakeMISNKDLDFFTRNAQQDKRARQIQDQIIEERKIHMNAVSIEILHEIIKEAQQRAERENG
Ga0209085_100776043300027741Freshwater LakeMIKDNNLEFFTKRAQLDKRARQIQTEIIEERKIHMNEVTIDILHEIIREAQQRAERENG
Ga0209085_102226743300027741Freshwater LakeMIKDNNLEFFTKRAQQNKRARQIQDQIIEERKIRMNDVTIEILHEIIREAQQRAERENDKRRSIKISG
Ga0209085_105467933300027741Freshwater LakeMTKDNNLEFFTKRAQLDKRARQIQTEILEERKILMNEVTVEILHEIIREAQQRAERENG
Ga0209189_140886223300027747Freshwater LakeIKNKMTKDNNLEFFTKRAQLDKRARQIQTEILEERKILMNEVTVEILHEIIREAQQRAERENG
Ga0209296_124336323300027759Freshwater LakeMIKDSDLEFFTKNAQKDKRARQIQDQLIAERKIRMNDVTIEILHEIIKEAQQRAEQENV
Ga0209296_141281613300027759Freshwater LakeMINNNDLDFFTRNAQQDKRARQIQDRIIAERKIEMNKISIEILHEIIKEAQ
Ga0209598_1015889223300027760Freshwater LakeMIKDNDYEFFTRNAQKDKRARQIQDQIIEERKIRMNDVTIEILHEIIREAEQRAERENG
Ga0209598_1037845713300027760Freshwater LakeMISNKDLDFFTRNAQQDKRARQIQDRIIEERKIRMNDISIEILHEIIKEAQQRAERENG
Ga0209086_1003811653300027770Freshwater LakeMINYKDLDFFTRNAQQDKRARQIQDQIIEERKIKMNEVAIEILHEIIKESQQRAERENG
Ga0209500_10000333523300027782Freshwater LakeMINNNDLDFFTRNAQQDKRARQIQDRIIAERKIEMNKISIEILHEIIKEAQQRAERENG
Ga0209500_1000157353300027782Freshwater LakeMINNNDLDFFTRNAQQDKRARQIQDQIIAEKKIKMNNVSIEILHEIIKEAQQRAERENG
Ga0209500_1007768743300027782Freshwater LakeMINNNDLDFFTRNAKQDKRARQIQDQIIAERKIQMNNVSIEILHEIIKEAQQRAERENG
Ga0209500_1012326543300027782Freshwater LakeMIKDNDYEFFTRNAQKDKRARQIQDKIIAERKIHMNDVTIEILHEIIREAEQRAEQENN
Ga0209500_1036211713300027782Freshwater LakeMINNNDLDFFTRNAQQDKRARQMQDQIIEERKIKMNNVSIEILHEIIKEAQQRAERENG
Ga0209358_1002276433300027804Freshwater LakeMINNKDLDFFTRNAQQDKRARQIQDQIIEERKIRMNEVAIEILHEIIKESQQRAERENG
Ga0209358_1002294953300027804Freshwater LakeMIKDSDLDFFTRNAQKDKRARQIQDQLIAERKIRMNDVTIEILHEIIKEAQQKAEQENA
Ga0209358_1005472523300027804Freshwater LakeMIKDNDLDFFTRNAQQDKRARQIQDQIIEERKIKMNEVAVEILHEIIKESQQRAERENG
Ga0209400_108410643300027963Freshwater LakeMISNKDLDFFTRNAQQDKRARQIQDQIIEEKKIKMNNVSIEILHEIIKEAQQRAERENG
Ga0209401_116692133300027971Freshwater LakeMINNDLDFFTRNAQQDKRARQIQDQIIEEKKIKMNNVSIEILHEIIKEAQQRAERENG
Ga0315293_1041783033300031746SedimentMKNKDLNDLDFFTRNAQQDKRAREIQNQIIEKRKIQMNKISIEILHGIIKEAQKRAEK
Ga0315288_1020656333300031772SedimentMKNKDLNDLDFFTRNAQQDKRAREIQNQIIEKRKIQMNKISIEILHGIIKEAQKRAEREF
Ga0315901_1031689313300031963FreshwaterLDFFTRNAQKDKRARQIQDQLIAERKIRMNDVTIEILHEIIKEAQQKAEQENA
Ga0315274_1014609773300031999SedimentMKEENSKDLDFFTRNAKQDKRAREIQNQIIAERKIKMNEISIEILHRIIKEAQRKAEQEFIK
Ga0315275_1196519423300032401SedimentMKNKDLNDLDFFTRNAQQDKRAREIQNQIIEKRKIQMNKISIEILHGIIK
Ga0334722_1001233893300033233SedimentMKNKDLNDLDFFTRNAQQDKRAREIQNQIIEKRKIQMNKISIEILHGIIKEAQKRAEKEF
Ga0334994_0383335_3_1673300033993FreshwaterDLDFFTRNAQQDKRARQIQDQIIAERKIQMNNISIEILHEIIKEAQQRAERENG
Ga0335019_0863540_28_2073300034066FreshwaterMINNNDLDFFTRNAQQDKRARQIQDQIIAERKIQMNNVSIEILHEIIKEAQQRAERENG
Ga0335027_0409620_2_1453300034101FreshwaterMINNNDLDFFTRNAQQDKRARQIQDRIIEERKIQMNNVSIEILHEIIK
Ga0335029_0318766_3_1733300034102FreshwaterDNNLDFFTRNAKQDKRAREIQDQIIAERKIKMNEISIEILHEIIREAQTRAERENG
Ga0335049_0224830_1087_12663300034272FreshwaterMINNNDLDFFTRNAQQDKRARQIQDQIIAERKIEMNKISIEILHEIIKEAQQRAERENG
Ga0335013_0673056_335_5143300034284FreshwaterMSTQKDLEFFTRNAKQDKKAREIQDQIIAERKIKMNEISIEILHEIIREAQTRAERENG


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