Metagenome / Metatranscriptome Family F086707

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086707
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	110 residues
Representative Sequence	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR
Number of Associated Samples	96
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.72 %
% of genes near scaffold ends (potentially truncated)	38.18 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.909 % of family members)
Environment Ontology (ENVO)	Unclassified (61.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (79.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.04% β-sheet: 0.00% Coil/Unstructured: 41.96%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13561	adh_short_C2	7.27
PF00535	Glycos_transf_2	1.82
PF13581	HATPase_c_2	1.82
PF13231	PMT_2	0.91
PF02366	PMT	0.91
PF04138	GtrA	0.91
PF00374	NiFeSe_Hases	0.91
PF13632	Glyco_trans_2_3	0.91
PF04542	Sigma70_r2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	0.91
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.91
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.91
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.91
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	0.91
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.55 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.64 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	62.73 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	33.64 %
Unclassified	root	N/A	30.91 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	16.36 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.73 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.82 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	31.82 %
Unclassified	root	N/A	30.91 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	16.36 %
unclassified Micrococcales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → unclassified Micrococcales	2.73 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.82 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	1.82 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	31.82 %
Unclassified	root	N/A	30.91 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	16.36 %
Micrococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → unclassified Micrococcales → Micrococcales bacterium	2.73 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.82 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.82 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.91 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia broussonetiae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	31.82 %
Unclassified	root	N/A	30.91 %
unclassified Nakamurella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella	16.36 %
Micrococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → unclassified Micrococcales → Micrococcales bacterium	2.73 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.82 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.82 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.91 %

Name	Rank	Taxonomy	Distribution
Pseudonocardia broussonetiae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	31.82 %
Unclassified	root	N/A	30.91 %
Nakamurella sp. PAMC28650	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	16.36 %
Micrococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → unclassified Micrococcales → Micrococcales bacterium	2.73 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.82 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.82 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_105140289	Not Available	540	Open in IMG/M
3300002568\|C688J35102_118044758	Not Available	525	Open in IMG/M
3300004463\|Ga0063356_105518168	Not Available	543	Open in IMG/M
3300005327\|Ga0070658_10345710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1273	Open in IMG/M
3300005329\|Ga0070683_100198197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1907	Open in IMG/M
3300005329\|Ga0070683_100594855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1059	Open in IMG/M
3300005330\|Ga0070690_100441511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	963	Open in IMG/M
3300005331\|Ga0070670_101005000	Not Available	759	Open in IMG/M
3300005337\|Ga0070682_100090672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1999	Open in IMG/M
3300005338\|Ga0068868_101921840	Not Available	561	Open in IMG/M
3300005340\|Ga0070689_100404432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1155	Open in IMG/M
3300005343\|Ga0070687_100063873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → unclassified Micrococcales → Micrococcales bacterium	1954	Open in IMG/M
3300005347\|Ga0070668_100474018	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300005354\|Ga0070675_101903499	Not Available	548	Open in IMG/M
3300005355\|Ga0070671_100096132	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300005366\|Ga0070659_100471872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1067	Open in IMG/M
3300005435\|Ga0070714_100514417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1143	Open in IMG/M
3300005436\|Ga0070713_100454237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1204	Open in IMG/M
3300005441\|Ga0070700_100259839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1250	Open in IMG/M
3300005455\|Ga0070663_100613279	Not Available	916	Open in IMG/M
3300005456\|Ga0070678_100439489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1141	Open in IMG/M
3300005466\|Ga0070685_10423725	Not Available	927	Open in IMG/M
3300005535\|Ga0070684_100604506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1020	Open in IMG/M
3300005543\|Ga0070672_101259642	Not Available	660	Open in IMG/M
3300005548\|Ga0070665_100112486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	2725	Open in IMG/M
3300005577\|Ga0068857_100319049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1435	Open in IMG/M
3300005577\|Ga0068857_100331083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1407	Open in IMG/M
3300005577\|Ga0068857_101805312	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300005616\|Ga0068852_100993608	Not Available	858	Open in IMG/M
3300005718\|Ga0068866_10338717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	952	Open in IMG/M
3300005834\|Ga0068851_10344411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	866	Open in IMG/M
3300005841\|Ga0068863_100036106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4707	Open in IMG/M
3300005842\|Ga0068858_100313426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1498	Open in IMG/M
3300005844\|Ga0068862_100010644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7598	Open in IMG/M
3300005844\|Ga0068862_100641994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1023	Open in IMG/M
3300006881\|Ga0068865_101593420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	587	Open in IMG/M
3300009098\|Ga0105245_12233031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	601	Open in IMG/M
3300009101\|Ga0105247_11175151	Not Available	609	Open in IMG/M
3300009162\|Ga0075423_13076340	Not Available	511	Open in IMG/M
3300009174\|Ga0105241_11027165	Not Available	773	Open in IMG/M
3300009174\|Ga0105241_11080566	Not Available	754	Open in IMG/M
3300009551\|Ga0105238_10390798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1383	Open in IMG/M
3300009553\|Ga0105249_11598871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	724	Open in IMG/M
3300010371\|Ga0134125_10171569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2417	Open in IMG/M
3300010396\|Ga0134126_10639092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1214	Open in IMG/M
3300010399\|Ga0134127_11544280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	737	Open in IMG/M
3300010401\|Ga0134121_10880049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	868	Open in IMG/M
3300010401\|Ga0134121_12521521	Not Available	557	Open in IMG/M
3300012898\|Ga0157293_10135213	All Organisms → cellular organisms → Bacteria → Terrabacteria group	679	Open in IMG/M
3300012955\|Ga0164298_10035291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	2287	Open in IMG/M
3300012957\|Ga0164303_10812581	Not Available	644	Open in IMG/M
3300012961\|Ga0164302_11465587	Not Available	561	Open in IMG/M
3300012986\|Ga0164304_11580964	Not Available	545	Open in IMG/M
3300013296\|Ga0157374_12051566	Not Available	598	Open in IMG/M
3300013297\|Ga0157378_12320307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	588	Open in IMG/M
3300013306\|Ga0163162_10091731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3121	Open in IMG/M
3300013306\|Ga0163162_10886366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1006	Open in IMG/M
3300013307\|Ga0157372_10288584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1908	Open in IMG/M
3300013308\|Ga0157375_12675063	Not Available	596	Open in IMG/M
3300014745\|Ga0157377_10091529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1797	Open in IMG/M
3300014745\|Ga0157377_10302832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1056	Open in IMG/M
3300015077\|Ga0173483_10607101	Not Available	603	Open in IMG/M
3300017792\|Ga0163161_10975488	Not Available	722	Open in IMG/M
3300017965\|Ga0190266_10330253	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300022467\|Ga0224712_10385784	Not Available	666	Open in IMG/M
3300025900\|Ga0207710_10142773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1157	Open in IMG/M
3300025900\|Ga0207710_10691534	Not Available	535	Open in IMG/M
3300025901\|Ga0207688_10045758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2441	Open in IMG/M
3300025904\|Ga0207647_10664492	Not Available	570	Open in IMG/M
3300025911\|Ga0207654_10094121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → unclassified Micrococcales → Micrococcales bacterium	1833	Open in IMG/M
3300025911\|Ga0207654_10664834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	747	Open in IMG/M
3300025918\|Ga0207662_10050897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2463	Open in IMG/M
3300025920\|Ga0207649_10473747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	948	Open in IMG/M
3300025924\|Ga0207694_10336474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1248	Open in IMG/M
3300025926\|Ga0207659_10181964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1666	Open in IMG/M
3300025929\|Ga0207664_11529664	Not Available	589	Open in IMG/M
3300025932\|Ga0207690_10592286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	904	Open in IMG/M
3300025933\|Ga0207706_10723612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	849	Open in IMG/M
3300025935\|Ga0207709_10448265	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300025936\|Ga0207670_10484242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1002	Open in IMG/M
3300025936\|Ga0207670_10501808	Not Available	985	Open in IMG/M
3300025937\|Ga0207669_10625057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	878	Open in IMG/M
3300025941\|Ga0207711_10478246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1160	Open in IMG/M
3300025942\|Ga0207689_10016975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	6159	Open in IMG/M
3300025944\|Ga0207661_10359797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1314	Open in IMG/M
3300025945\|Ga0207679_10374875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1246	Open in IMG/M
3300025945\|Ga0207679_11796028	Not Available	560	Open in IMG/M
3300025960\|Ga0207651_11896277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	536	Open in IMG/M
3300025972\|Ga0207668_10774439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	848	Open in IMG/M
3300025981\|Ga0207640_11152866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	687	Open in IMG/M
3300026023\|Ga0207677_10699759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	899	Open in IMG/M
3300026035\|Ga0207703_10183966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1846	Open in IMG/M
3300026067\|Ga0207678_10143248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → unclassified Micrococcales → Micrococcales bacterium	2040	Open in IMG/M
3300026088\|Ga0207641_10616191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1064	Open in IMG/M
3300026089\|Ga0207648_10738047	Not Available	914	Open in IMG/M
3300026116\|Ga0207674_10023708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	6568	Open in IMG/M
3300026118\|Ga0207675_100206581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1887	Open in IMG/M
3300026118\|Ga0207675_100804462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	953	Open in IMG/M
3300026121\|Ga0207683_10007364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9435	Open in IMG/M
3300028589\|Ga0247818_10743506	Not Available	682	Open in IMG/M
3300028592\|Ga0247822_10350665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	1140	Open in IMG/M
3300028596\|Ga0247821_10300123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	978	Open in IMG/M
3300028782\|Ga0307306_10255611	Not Available	514	Open in IMG/M
3300028810\|Ga0307294_10077709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1016	Open in IMG/M
3300028824\|Ga0307310_10620245	Not Available	552	Open in IMG/M
3300028889\|Ga0247827_11033642	Not Available	560	Open in IMG/M
3300030336\|Ga0247826_10017660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	3275	Open in IMG/M
3300031091\|Ga0308201_10234757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia broussonetiae	624	Open in IMG/M
3300032080\|Ga0326721_10103959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650	1364	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	62.73%
Environmental	Environmental	37.27%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	62.73%
Terrestrial	Environmental → Terrestrial	37.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.36%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	24.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.27%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	24.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.55%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	8.18%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.27%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	6.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1051402891	3300000956	Soil	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPISTLARDDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAGELIDAGWARATAITAMALPNRPNRPEDARR*
C688J35102_1180447582	3300002568	Soil	MVKPQSPPENDRPVFGLADDDVDTFRRWADGLVGLPISTLARGDVGPMLSGRAWLDRAFDACTALLTVQRRAVDRLLEAQHRIAAELVDAGWA
Ga0063356_1055181681	3300004463	Arabidopsis Thaliana Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0070658_103457102	3300005327	Corn Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0070683_1001981972	3300005329	Corn Rhizosphere	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAGELIDAGWARATAITAMALPNRPNRPEDARR*
Ga0070683_1005948552	3300005329	Corn Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR*
Ga0070690_1004415112	3300005330	Switchgrass Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0070670_1010050001	3300005331	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR*
Ga0070682_1000906722	3300005337	Corn Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR*
Ga0068868_1019218402	3300005338	Miscanthus Rhizosphere	LPHMVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR*
Ga0070689_1004044321	3300005340	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR*
Ga0070687_1000638731	3300005343	Switchgrass Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR*
Ga0070668_1004740182	3300005347	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0070675_1019034991	3300005354	Miscanthus Rhizosphere	DDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR*
Ga0070671_1000961322	3300005355	Switchgrass Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNCPEDARR*
Ga0070659_1004718722	3300005366	Corn Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDALAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0070714_1005144171	3300005435	Agricultural Soil	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDGGWARATAITAMTLPNRPEDARR*
Ga0070713_1004542371	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SGLHDDDVDLDPLRRWADGLVGLPIGTLARGDVGPMLSGRAWLDSAFDACTAVLTIQRRSVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR*
Ga0070700_1002598392	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0070663_1006132792	3300005455	Corn Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR*
Ga0070678_1004394892	3300005456	Miscanthus Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR*
Ga0070685_104237252	3300005466	Switchgrass Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR*
Ga0070684_1006045061	3300005535	Corn Rhizosphere	PHMVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR*
Ga0070672_1012596422	3300005543	Miscanthus Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0070665_1001124861	3300005548	Switchgrass Rhizosphere	DVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR*
Ga0068857_1003190492	3300005577	Corn Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR*
Ga0068857_1003310832	3300005577	Corn Rhizosphere	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAGELIDAGWARATAITAMALPNRPNRPEDARR*
Ga0068857_1018053121	3300005577	Corn Rhizosphere	LHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0068852_1009936082	3300005616	Corn Rhizosphere	LPHMVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAEIVDAGWARATAITAMALPNRPEDARR*
Ga0068866_103387173	3300005718	Miscanthus Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAVRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDALAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0068851_103444111	3300005834	Corn Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAGELIDAGWARAITAMALPNRPN
Ga0068863_1000361063	3300005841	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR*
Ga0068858_1003134262	3300005842	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0068862_10001064412	3300005844	Switchgrass Rhizosphere	DDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0068862_1006419943	3300005844	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0068865_1015934202	3300006881	Miscanthus Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTT
Ga0105245_122330311	3300009098	Miscanthus Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGW
Ga0105247_111751512	3300009101	Switchgrass Rhizosphere	DDDADTFRRWADGLVGLPISTLARDDVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0075423_130763401	3300009162	Populus Rhizosphere	VLEERRIRNAGRSFPHMVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRMAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0105241_110271652	3300009174	Corn Rhizosphere	VLEERRIRNAGRSFPHMVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0105241_110805661	3300009174	Corn Rhizosphere	PNATQEGSLPHMVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR*
Ga0105238_103907981	3300009551	Corn Rhizosphere	MVKPQSPTENDRPVLGLHDDDDVDAFRRWADGLVGLPISTLTRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDAR
Ga0105249_115988712	3300009553	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRP
Ga0134125_101715693	3300010371	Terrestrial Soil	VLEERRIRNAGRSFPHMVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELVDAGWARATAITAMALPNRPEDARR*
Ga0134126_106390921	3300010396	Terrestrial Soil	VLEERRIRNAGRSFPHMVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDGGWARATAITAMTLPNRPEDARR*
Ga0134127_115442801	3300010399	Terrestrial Soil	MVKPQSPPENDRPVFGVADDDVDTFRRWAEGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0134121_108800491	3300010401	Terrestrial Soil	TENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR*
Ga0134121_125215212	3300010401	Terrestrial Soil	VDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR*
Ga0157293_101352132	3300012898	Soil	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFTALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0164298_100352912	3300012955	Soil	MVNPQSPTKNDRPVSGLHDDDVDLDPLRRWADGLVGLPIGTLARGDVGPMLSGRAWLDSAFDACTAVLTIQRRSVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0164303_108125812	3300012957	Soil	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPVSTLARGDVGPMLSGRAWLDSAFDACTAVLTIQRRSVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0164302_114655871	3300012961	Soil	LADDDADTFRRWADGLVGLPVSTLARGDVGPMLSGRAWLDSAFDACTAVLTIQRRSVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0164304_115809641	3300012986	Soil	VVLEERRTQRRKEPPRMVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR*
Ga0157374_120515662	3300013296	Miscanthus Rhizosphere	VLEERRIRNAGRSFPHMVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR*
Ga0157378_123203071	3300013297	Miscanthus Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0163162_100917316	3300013306	Switchgrass Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAVRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0163162_108863662	3300013306	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR*
Ga0157372_102885842	3300013307	Corn Rhizosphere	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR*
Ga0157375_126750632	3300013308	Miscanthus Rhizosphere	GVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR*
Ga0157377_100915294	3300014745	Miscanthus Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDAR
Ga0157377_103028321	3300014745	Miscanthus Rhizosphere	SPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR*
Ga0157377_112929311	3300014745	Miscanthus Rhizosphere	VLEERRIRNAGRSFPHMVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELID
Ga0173483_106071012	3300015077	Soil	PHMVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAGELIDAGWARATAITAMALPNRPNRPEDARR*
Ga0163161_109754881	3300017792	Switchgrass Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAVRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDALAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0190266_103302531	3300017965	Soil	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0224712_103857841	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0207710_101427731	3300025900	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR
Ga0207710_106915341	3300025900	Switchgrass Rhizosphere	VLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR
Ga0207688_100457583	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR
Ga0207647_106644921	3300025904	Corn Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNCPEDARR
Ga0207654_100941211	3300025911	Corn Rhizosphere	PNATQEGSLPHMVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR
Ga0207654_106648341	3300025911	Corn Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGP
Ga0207662_100508973	3300025918	Switchgrass Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR
Ga0207649_104737472	3300025920	Corn Rhizosphere	PMVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR
Ga0207694_103364741	3300025924	Corn Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR
Ga0207659_101819642	3300025926	Miscanthus Rhizosphere	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR
Ga0207664_115296641	3300025929	Agricultural Soil	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDGGWARATAITAMTLPNRPEDARR
Ga0207690_105922862	3300025932	Corn Rhizosphere	FGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR
Ga0207706_107236121	3300025933	Corn Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR
Ga0207709_104482651	3300025935	Miscanthus Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0207670_104842423	3300025936	Switchgrass Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGL
Ga0207670_105018082	3300025936	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR
Ga0207669_106250573	3300025937	Miscanthus Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAM
Ga0207711_104782462	3300025941	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR
Ga0207689_100169751	3300025942	Miscanthus Rhizosphere	DDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR
Ga0207661_103597972	3300025944	Corn Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR
Ga0207679_103748751	3300025945	Corn Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPG
Ga0207679_117960281	3300025945	Corn Rhizosphere	DVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAEIVDAGWARATAITAMTLPNRPEDARR
Ga0207651_118962772	3300025960	Switchgrass Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0207668_107744392	3300025972	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACAALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPNRPNRPNRPNRPNRPEDARR
Ga0207640_111528661	3300025981	Corn Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDAFAALLTVPRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0207677_106997591	3300026023	Miscanthus Rhizosphere	RPNATQEGSLPHMVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR
Ga0207703_101839662	3300026035	Switchgrass Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR
Ga0207678_101432481	3300026067	Corn Rhizosphere	NDRPVFGVADDDVDTFRRWADGLVGLPISTLARGEVGPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR
Ga0207641_106161911	3300026088	Switchgrass Rhizosphere	VKPQSPPENDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNRPEDARR
Ga0207648_107380472	3300026089	Miscanthus Rhizosphere	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQPVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR
Ga0207674_100237085	3300026116	Corn Rhizosphere	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAAELIDAGWARVTAITAMTLPNRPEDARR
Ga0207675_1002065812	3300026118	Switchgrass Rhizosphere	MVKPQSPPENDRPVFGLADDDVDTIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDVCTALLTVQRRSVDRLLEAHHRIAGELIDAGWARATAITAMALPNRPEDARR
Ga0207675_1008044621	3300026118	Switchgrass Rhizosphere	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDALAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0207683_100073643	3300026121	Miscanthus Rhizosphere	MVKPQSPPKNDRPVFGVADDDVDTFRRWADGLVGLPISTLARGDVAPMLSGRAWLDSAFDACTALLTVQRRAVDRLLEAQHRIAAELIDAGWARATAITAMALPNCPEDARR
Ga0247818_107435061	3300028589	Soil	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAALLTVQRQSVDRLLQAQHRIAAELIDAGWARTTTLSSLVLPGPAKDARR
Ga0247822_103506652	3300028592	Soil	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPVSTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAGELIDAGWARATAITAMALPNRPNRPNRPNRPEDAR
Ga0247821_103001232	3300028596	Soil	MVKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPVSTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAGELIDAGWARATAITAMALPNRPDRPEDARR
Ga0307306_102556111	3300028782	Soil	TRNDRPVVGVHDDDVDAFRRWADGLVGLPISTLTRGDVGPMLSGRAWLDSAFDALAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0307294_100777091	3300028810	Soil	VDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDALAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGPAKDARR
Ga0307310_106202451	3300028824	Soil	LHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDACAALLTVQRQSVDRLLEAQHRIAAELIDAGWVCTTAISGLALPKRSEDAGR
Ga0247827_110336422	3300028889	Soil	VKPQSPPENDRPVFGLADDDADTFRRWADGLVGLPVSTLARGDVGPMLSGRAWLDSAFDACTALLTVQRRSVDRLLEAQHRIAGELIDAGWARATAITAMALPNRPDRPEDARR
Ga0247826_100176603	3300030336	Soil	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFEAFAAMLTVQRQSVDRLLQAQQRIAAELIDAGWARTTTLSSLVLPGPAKDARR
Ga0308201_102347572	3300031091	Soil	MVKPQSPTENDRPVLGLHDDDVDAIRRWADGLVGLPISTLVRGDVGPMLSGRAWLDSAFDALAALLTVQRQSVDRLLEAQHRIAAELIDAGWARTTALSGLVLPGP
Ga0326721_101039591	3300032080	Soil	MVKPQSPTENDRPVLGLPDDDVDAIRRWADGLVGLPISTLARGDVGPMLSGRAWLDSAFDAFTALLTVQRQSVDRLLEAQHRIAAELIDAAWARTTAFSGLVLPGPAKDARR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086707

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences