NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F086855

Metagenome / Metatranscriptome Family F086855

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F086855
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 40 residues
Representative Sequence DDTFFIRVTGGDVETKETLRFDVEKKTVEVANRAQGQR
Number of Associated Samples 105
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.82 %
% of genes near scaffold ends (potentially truncated) 97.27 %
% of genes from short scaffolds (< 2000 bps) 89.09 %
Associated GOLD sequencing projects 99
AlphaFold2 3D model prediction Yes
3D model pTM-score0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (82.727 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(12.727 % of family members)
Environment Ontology (ENVO) Unclassified
(23.636 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.273 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 15.15%    Coil/Unstructured: 84.85%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.23
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF03992ABM 20.91
PF07969Amidohydro_3 19.09
PF00296Bac_luciferase 6.36
PF00106adh_short 3.64
PF02900LigB 3.64
PF13594Obsolete Pfam Family 2.73
PF08843AbiEii 1.82
PF13458Peripla_BP_6 1.82
PF04909Amidohydro_2 1.82
PF13378MR_MLE_C 1.82
PF10041DUF2277 1.82
PF00550PP-binding 0.91
PF04255DUF433 0.91
PF00496SBP_bac_5 0.91
PF13561adh_short_C2 0.91
PF05378Hydant_A_N 0.91
PF14833NAD_binding_11 0.91
PF03364Polyketide_cyc 0.91
PF00583Acetyltransf_1 0.91
PF00034Cytochrom_C 0.91
PF05598DUF772 0.91
PF00903Glyoxalase 0.91
PF03480DctP 0.91
PF00596Aldolase_II 0.91
PF00378ECH_1 0.91
PF02129Peptidase_S15 0.91
PF03471CorC_HlyC 0.91
PF13522GATase_6 0.91
PF01408GFO_IDH_MocA 0.91
PF02730AFOR_N 0.91
PF08352oligo_HPY 0.91
PF02746MR_MLE_N 0.91
PF13419HAD_2 0.91
PF02515CoA_transf_3 0.91
PF00702Hydrolase 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 6.36
COG0145N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunitAmino acid transport and metabolism [E] 1.82
COG2253Predicted nucleotidyltransferase component of viral defense systemDefense mechanisms [V] 1.82
COG4948L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamilyCell wall/membrane/envelope biogenesis [M] 1.82
COG1804Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferasesLipid transport and metabolism [I] 0.91
COG2414Aldehyde:ferredoxin oxidoreductaseEnergy production and conversion [C] 0.91
COG2442Predicted antitoxin component of a toxin-antitoxin system, DUF433 familyDefense mechanisms [V] 0.91

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms83.64 %
UnclassifiedrootN/A16.36 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_100485992All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium522Open in IMG/M
3300000443|F12B_10233428All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium509Open in IMG/M
3300002912|JGI25386J43895_10154149All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300003987|Ga0055471_10087229All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium900Open in IMG/M
3300004024|Ga0055436_10005687All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2519Open in IMG/M
3300004479|Ga0062595_100801922All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300004479|Ga0062595_101081662All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium699Open in IMG/M
3300005175|Ga0066673_10350532All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria862Open in IMG/M
3300005440|Ga0070705_101783665All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium522Open in IMG/M
3300005471|Ga0070698_100013991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia8486Open in IMG/M
3300005556|Ga0066707_10544642All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium749Open in IMG/M
3300005558|Ga0066698_10902797Not Available565Open in IMG/M
3300005560|Ga0066670_10707941All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium610Open in IMG/M
3300005586|Ga0066691_10577857All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria669Open in IMG/M
3300005713|Ga0066905_100824231Not Available806Open in IMG/M
3300005829|Ga0074479_10710805All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium594Open in IMG/M
3300005844|Ga0068862_100331166All Organisms → cellular organisms → Bacteria1408Open in IMG/M
3300006034|Ga0066656_10793504Not Available607Open in IMG/M
3300006050|Ga0075028_100745059All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium593Open in IMG/M
3300006800|Ga0066660_11023756All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300006806|Ga0079220_10307403All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales983Open in IMG/M
3300006845|Ga0075421_101033655All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300006846|Ga0075430_100716014All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria825Open in IMG/M
3300006904|Ga0075424_102420267All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium551Open in IMG/M
3300007258|Ga0099793_10655099All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300009038|Ga0099829_10701987Not Available840Open in IMG/M
3300009088|Ga0099830_10246946All Organisms → cellular organisms → Bacteria1411Open in IMG/M
3300009137|Ga0066709_103105048All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300009147|Ga0114129_10600341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1426Open in IMG/M
3300009177|Ga0105248_10085486All Organisms → cellular organisms → Bacteria3549Open in IMG/M
3300009799|Ga0105075_1042944Not Available560Open in IMG/M
3300009806|Ga0105081_1012351Not Available962Open in IMG/M
3300010047|Ga0126382_10597999Not Available907Open in IMG/M
3300010303|Ga0134082_10170973All Organisms → cellular organisms → Bacteria883Open in IMG/M
3300010321|Ga0134067_10178066Not Available771Open in IMG/M
3300010336|Ga0134071_10697632All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300010359|Ga0126376_13101835All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300010360|Ga0126372_11642253Not Available682Open in IMG/M
3300010362|Ga0126377_10164823All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2095Open in IMG/M
3300010391|Ga0136847_10141768All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1456Open in IMG/M
3300011270|Ga0137391_11395281All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300012205|Ga0137362_11271493All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium621Open in IMG/M
3300012207|Ga0137381_10564512Not Available992Open in IMG/M
3300012353|Ga0137367_10158150All Organisms → cellular organisms → Bacteria1651Open in IMG/M
3300012355|Ga0137369_10252912All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1331Open in IMG/M
3300012685|Ga0137397_10277785All Organisms → cellular organisms → Bacteria1248Open in IMG/M
3300012923|Ga0137359_10316040All Organisms → cellular organisms → Bacteria1390Open in IMG/M
3300012944|Ga0137410_11657047All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300012948|Ga0126375_10210878All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1284Open in IMG/M
3300012971|Ga0126369_10523052Not Available1247Open in IMG/M
3300014154|Ga0134075_10112816All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1152Open in IMG/M
3300014262|Ga0075301_1182565All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium505Open in IMG/M
3300015052|Ga0137411_1025146All Organisms → cellular organisms → Bacteria1634Open in IMG/M
3300015356|Ga0134073_10067565All Organisms → cellular organisms → Bacteria995Open in IMG/M
3300016404|Ga0182037_11715886Not Available560Open in IMG/M
3300017966|Ga0187776_11012749All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300018053|Ga0184626_10014587All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria3125Open in IMG/M
3300018059|Ga0184615_10059912All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2123Open in IMG/M
3300018063|Ga0184637_10083563All Organisms → cellular organisms → Bacteria1960Open in IMG/M
3300018063|Ga0184637_10174826All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1322Open in IMG/M
3300018063|Ga0184637_10540864All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300018422|Ga0190265_10291868All Organisms → cellular organisms → Bacteria1697Open in IMG/M
3300018422|Ga0190265_11799629All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300018431|Ga0066655_10245573All Organisms → cellular organisms → Bacteria1139Open in IMG/M
3300018468|Ga0066662_12260472All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300018482|Ga0066669_11275903All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium664Open in IMG/M
3300018482|Ga0066669_12399844All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300019249|Ga0184648_1183364All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium549Open in IMG/M
3300019458|Ga0187892_10032441All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales4185Open in IMG/M
3300019789|Ga0137408_1044791All Organisms → cellular organisms → Bacteria2507Open in IMG/M
3300020067|Ga0180109_1013196All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium965Open in IMG/M
3300021081|Ga0210379_10431669All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300022756|Ga0222622_11089206All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium588Open in IMG/M
3300025165|Ga0209108_10266436All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales868Open in IMG/M
3300025324|Ga0209640_10813712All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300025910|Ga0207684_10314099All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1351Open in IMG/M
3300025919|Ga0207657_10294616All Organisms → cellular organisms → Bacteria1286Open in IMG/M
3300025923|Ga0207681_11059950All Organisms → cellular organisms → Bacteria681Open in IMG/M
3300025939|Ga0207665_11451743All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium546Open in IMG/M
3300026001|Ga0208000_115385Not Available511Open in IMG/M
3300026095|Ga0207676_12072815All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300026528|Ga0209378_1100830All Organisms → cellular organisms → Bacteria1275Open in IMG/M
3300026536|Ga0209058_1335668All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium522Open in IMG/M
3300026538|Ga0209056_10039316All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales4358Open in IMG/M
3300026552|Ga0209577_10219363All Organisms → cellular organisms → Bacteria1450Open in IMG/M
3300026827|Ga0207591_107563All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium554Open in IMG/M
3300027511|Ga0209843_1049717Not Available742Open in IMG/M
3300027862|Ga0209701_10429408All Organisms → cellular organisms → Bacteria → Proteobacteria731Open in IMG/M
3300027907|Ga0207428_10013931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales7005Open in IMG/M
3300027909|Ga0209382_10244186All Organisms → cellular organisms → Bacteria2041Open in IMG/M
3300027964|Ga0256864_1156686All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300028809|Ga0247824_10075300All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus1755Open in IMG/M
3300028878|Ga0307278_10356429All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria645Open in IMG/M
3300030830|Ga0308205_1031788All Organisms → cellular organisms → Bacteria649Open in IMG/M
(restricted) 3300031197|Ga0255310_10089569All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales821Open in IMG/M
3300031228|Ga0299914_10010253All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7162Open in IMG/M
3300031538|Ga0310888_10367820All Organisms → cellular organisms → Bacteria → Proteobacteria837Open in IMG/M
3300031716|Ga0310813_11822889All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium572Open in IMG/M
3300031740|Ga0307468_100477883All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp. CPCC 100927980Open in IMG/M
3300031764|Ga0318535_10113480All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1193Open in IMG/M
3300031833|Ga0310917_10288444Not Available1109Open in IMG/M
3300031894|Ga0318522_10297924Not Available611Open in IMG/M
3300031897|Ga0318520_11016960Not Available524Open in IMG/M
3300032174|Ga0307470_10936318All Organisms → cellular organisms → Bacteria → Proteobacteria684Open in IMG/M
3300032205|Ga0307472_102475237All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria528Open in IMG/M
3300033814|Ga0364930_0076585All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1142Open in IMG/M
3300034056|Ga0373893_062293All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum525Open in IMG/M
3300034090|Ga0326723_0270576All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales759Open in IMG/M
3300034643|Ga0370545_116571All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium595Open in IMG/M
3300034664|Ga0314786_072078Not Available696Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil12.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.36%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.45%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.45%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.45%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.55%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.64%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.64%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.73%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.73%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.73%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.82%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.82%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment0.91%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.91%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.91%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.91%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.91%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.91%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.91%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.91%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.91%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.91%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.91%
Bio-OozeEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze0.91%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.91%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.91%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.91%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.91%
Sediment SlurryEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry0.91%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000443Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemlyEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300003987Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2EnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005829Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBCEnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009799Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30EnvironmentalOpen in IMG/M
3300009806Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010391Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014262Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1EnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300018053Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1EnvironmentalOpen in IMG/M
3300018059Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coexEnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019249Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019458Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaGEnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020067Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025165Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1EnvironmentalOpen in IMG/M
3300025324Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026001Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104 (SPAdes)EnvironmentalOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300026827Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027511Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027964Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111 HiSeqEnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300030830Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031228Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033814Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17EnvironmentalOpen in IMG/M
3300034056Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.3EngineeredOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M
3300034643Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034664Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10048599213300000364SoilDDTFFIRVTGGDVETKXTLRFDVEKKTVEVANRAQGQR*
F12B_1023342813300000443SoilFFIRVTGGDVETKETNRFDVAKQTVEVANRAMGQR*
JGI25386J43895_1015414913300002912Grasslands SoilSIEYGDDTFFIRVTGGDVETKKTLRFDLEKKAVQVADRAQGQR*
Ga0055471_1008722913300003987Natural And Restored WetlandsIEYGDDTFFIRVTGGDVESKETLRFDVAGKTVQVANRAQGQR*
Ga0055436_1000568733300004024Natural And Restored WetlandsDIHSIEFGDDTFFIRVTGGDVETKDTLRFDVAQNTVEVASRAQGQR*
Ga0062595_10080192233300004479SoilFGDDTFFIRVTGGDVETKETNRFDVAKKTVEVANRAMGQR*
Ga0062595_10108166213300004479SoilFGDDTFFIRVTGGDVETKETHRFDVEKKTVEVANRAIGQR*
Ga0066673_1035053213300005175SoilSIEYGDDTFFIRVTGGDVESKQTLKFDAAKKTVEVANRALGQR*
Ga0070705_10178366523300005440Corn, Switchgrass And Miscanthus RhizosphereSIEFGDDTFFIRVTGGDVESKETNRFDVAKQTVEVANRALGQR*
Ga0070698_100013991103300005471Corn, Switchgrass And Miscanthus RhizosphereIHSIEFGDDTFFIRVTGGDVETKETHRFDVEKQTVEVANRAIGQR*
Ga0066707_1054464223300005556SoilFGDDTFFIRVTGGDVEKKQTLKFDPDKKTVEVANRALGQR*
Ga0066698_1090279713300005558SoilHSIEYGDDTFFIRVTGGDVESQKTLRFDLDKKSVQVADRAQGQR*
Ga0066670_1070794113300005560SoilDDTFFIRVTGGDVETKQTLKFDPEKKTVEVANRALGQR*
Ga0066691_1057785723300005586SoilTFFIRVTGGDVERKQTLKFDAAKKTVEVANRALGQR*
Ga0066905_10082423113300005713Tropical Forest SoilDDTFFIRVTGGDVEQQKTLRFDPDKKAVQVADRAQGQR*
Ga0074479_1071080523300005829Sediment (Intertidal)FIRVTGGDVETKETHRFDVEKKTVEVANRAKGER*
Ga0068862_10033116643300005844Switchgrass RhizosphereIEFGDDTFFIRVTGGDVETKKTLKFDKDKKTVEVADRAMNQR*
Ga0066656_1079350423300006034SoilHSIEYGDDTFFIRVTGGDVESNKTLRFDLEKKSVQVADRAQGQR*
Ga0075028_10074505923300006050WatershedsSIEFGDDTFFIRVTGGDVESKETHRFDVEKKTVQVANRALGQR*
Ga0066660_1102375623300006800SoilDDTFFIRVTGGDVETKKTLRFDLEKKTVQVADRAQGQR*
Ga0079220_1030740313300006806Agricultural SoilFGDDTFFIRVTGGDVETKETNRFDVHKKTVEVANRALGQR*
Ga0075421_10103365533300006845Populus RhizosphereTFFIRVTGGDVETKETNRFDVAKQTVEVANRAMGQR*
Ga0075430_10071601433300006846Populus RhizosphereFGDDTFFIRVTGGDVEIKETLRFDPEKKTVTVANRALGQR*
Ga0075424_10242026733300006904Populus RhizosphereIEFGDDTFFIRVTGGDVETKQTLKFDVEKKTVEVANRALGQR*
Ga0099793_1065509913300007258Vadose Zone SoilSIEYGDDTFFIRVTGGDVESKKTLRFDLEKKSVHVADRAQGQR*
Ga0099829_1070198713300009038Vadose Zone SoilDTFFIRVTGGDVETKETLRFDVEKKTVEVANRAKGQR*
Ga0099830_1024694613300009088Vadose Zone SoilIEFGDDTFFLRVTGGDVESKETRRFDVEKKTVEIANRALGQR*
Ga0066709_10310504823300009137Grasslands SoilFGNDTFFIRVTGGDVETKETLRFDVEKKTVEVANRAKGQR*
Ga0114129_1060034133300009147Populus RhizosphereEYGNDTFFIRVTGGDVETKQTLKFDVEKKTVEVANRALGQR*
Ga0105248_1008548653300009177Switchgrass RhizosphereDDTFFIRVTGGDVETKETLRFDVEKKTVEVANRAQGQR*
Ga0105075_104294413300009799Groundwater SandHSIEYGDDTFFIRVTGGDVESQKTLRFDLEKKSVQVADRALGQR*
Ga0105081_101235123300009806Groundwater SandEYGDDTFFLRVTGGDVESQKTLRFDLDKKSVQVADRAQGQR*
Ga0126382_1059799913300010047Tropical Forest SoilTFFIRVTGGDVETKKTLRFDPEKKAVQIADRAQGQR*
Ga0134082_1017097313300010303Grasslands SoilFFVRVTGGDVETKETLRFDVEKKTVEIANRAQGQR*
Ga0134067_1017806623300010321Grasslands SoilFFLRVTGGDVETKKTLRFDLEKKTVQVADRAQGQR*
Ga0134071_1069763223300010336Grasslands SoilDDTFFVRVTGGDVETKETLRFDVEKKTVEIANRARGQR*
Ga0126376_1310183513300010359Tropical Forest SoilIHSIEYGDDTIFLRVTGGDVESQETLRFDVEQKTVTVANRALGQR*
Ga0126372_1164225323300010360Tropical Forest SoilYGDDTFFIRVTGGDVETKKTLRFDPEKKTVQIADRAQGQR*
Ga0126377_1016482313300010362Tropical Forest SoilTFFIRVTGGDVEQQKTLRFDPDKKAVQVADRAQGQR*
Ga0136847_1014176833300010391Freshwater SedimentMKYPTGGRHETKETHRFDVGQQTVEVANRAQGQR*
Ga0137391_1139528133300011270Vadose Zone SoilDAGSDDTFFIRVTGGDVETRKTLKFDAERKTVEVADRALGQR*
Ga0137362_1127149323300012205Vadose Zone SoilDIHSIEFGDDTFFIRVTGGDVETKETHRFDVEKKTVAVANRAIGQR*
Ga0137381_1056451213300012207Vadose Zone SoilIEYGDDTFFIRVTGGDVESQKTLRFDLDKKSVQVADRAQGQR*
Ga0137367_1015815013300012353Vadose Zone SoilIEFGNDTFFIRVTGGDVETKETLRFDVERKTVEVANRAKGQR*
Ga0137369_1025291233300012355Vadose Zone SoilFGDDTFFLRVTGGDVETKDTLRFDVEKKTVEVANRAKGQR*
Ga0137397_1027778523300012685Vadose Zone SoilFGDDTFFIRVTGGDVEKQQTLKFDPDKKTVEVANRALGQR*
Ga0137359_1031604023300012923Vadose Zone SoilHSIEYGDDTFFIRVTGGDVETMKTLKFDKDKQTVEVADRAMNQR*
Ga0137410_1165704723300012944Vadose Zone SoilSIEYGDDTFFIRVTGGDVESKKTLRFDLEQKTVKVADRAQGQR*
Ga0126375_1021087813300012948Tropical Forest SoilIFLRVTGGDVESKETHRFDVEKQTVEIANRAMGQR*
Ga0126369_1052305213300012971Tropical Forest SoilHSIEYGDDTFFIRVTGGDVEQQKTLRFDPDKKAVQVADRAQGQR*
Ga0134075_1011281633300014154Grasslands SoilEYGDDTFFIRVTGGDVESNKTLRFDLEKKSVQVADRAQGQR*
Ga0075301_118256523300014262Natural And Restored WetlandsSIEFGDDTFFIRVTGGDVETKETLRFDVDKKTVTVADRAQGQR*
Ga0137411_102514643300015052Vadose Zone SoilTFFLRVTGGDVETKETHRFDVEKKTVEIANRAKGER*
Ga0134073_1006756523300015356Grasslands SoilFFVRVTGGDVETKETLRFDVEKKTVEIANRARGQR*
Ga0182037_1171588613300016404SoilDDTFFIRVTGGDVETKKTLRFDPEKKSVQIADRAQGQR
Ga0187776_1101274923300017966Tropical PeatlandEFGDDTFFLRVTGGDVETKETLRFDVANKTVEVANRAQGQR
Ga0184626_1001458753300018053Groundwater SedimentDDTFFLRVTGGDVETKKTLKFDLEKKTVEVADRAMNQR
Ga0184615_1005991243300018059Groundwater SedimentFGDDTFFLRVTGGDVESKKTLKFDKDKKTVEVADRAMNQR
Ga0184637_1008356313300018063Groundwater SedimentEFGDDTFFLRVTGGDVETKETHRFDVDKQTVEIANRAKGQR
Ga0184637_1017482643300018063Groundwater SedimentFFIRVTGGDVETQKTLRFDVEKKTVEVANRALNQR
Ga0184637_1054086423300018063Groundwater SedimentDIHSIEFGPDTFFIRVTGGDVESKETFRFDVDKKTVQVANRALGQR
Ga0190265_1029186813300018422SoilIHSIEFGDDTFFIRVTGGDVETKETHRFDVEKKTVEIANRAQGQR
Ga0190265_1179962923300018422SoilSIEFGDDTFFIRVTGGDVETKKTLKFDKDKKTVEVADRAMNQR
Ga0066655_1024557313300018431Grasslands SoilDIHSIEYGNDTFFIRVTGGDVETKQTLKFDPEKKTVEVANRALGQR
Ga0066662_1226047223300018468Grasslands SoilSIAYGDYTFFILVTGVDVEKQKTLRFHLEKQTVEVEDRAQHLQ
Ga0066669_1127590323300018482Grasslands SoilTFFIRVTGGDVEKKQTLKFDPDKKTVEVANRALGQR
Ga0066669_1239984423300018482Grasslands SoilFFIRVTGGDVESKETLRFDVEKKTVEVANRAKGQR
Ga0184648_118336423300019249Groundwater SedimentDDTFFLRVTGGDVETKETHRFDVEKQTVEVANRAKGQR
Ga0187892_1003244113300019458Bio-OozeEYGDDTFFIRVTGGDVESKETHRFDVDKKTVEIANRALGQR
Ga0137408_104479113300019789Vadose Zone SoilIHSIEFGDDTFFLRVTGGDVETKETHRFDVEKKTVEIANRAKGER
Ga0180109_101319633300020067Groundwater SedimentGDDTFFIRVTGGDVETKETLRFDVEKKTVEVANRSQGQR
Ga0210379_1043166933300021081Groundwater SedimentDDTFFLRVTGGDVETKKTLKFDKEKKTVEVADRAMNQR
Ga0222622_1108920613300022756Groundwater SedimentDIHSIEFGDDTFFLRVTGGDVETKETHRFDVEKKTVEIANRAQGQR
Ga0209108_1026643633300025165SoilSIEFGDDTFFIRVTGGDVETNETHRFDVEKKTVEIANRAQGQR
Ga0209640_1081371213300025324SoilHSIEFGDDTFFIRVTGGDVETQKTLKFDPDKKTVEIADRALNQR
Ga0207684_1031409933300025910Corn, Switchgrass And Miscanthus RhizosphereIEFGDDTFFIRVTGGDVETKQTHRFDVEKKTVEVANRALGQR
Ga0207657_1029461613300025919Corn RhizosphereMPFVFGDDTFFIRVTGGDVETKETLRFDVEKKTVEVANRAQGQR
Ga0207681_1105995033300025923Switchgrass RhizosphereFFIRVTGGDVETKETLRFDVEKKTVEVANRAQGQR
Ga0207665_1145174323300025939Corn, Switchgrass And Miscanthus RhizosphereEFGDDTFFIRVTGGDVETKETHRFDVEKKTVEVANRAIGQR
Ga0208000_11538513300026001Rice Paddy SoilEFGDDTFFLRVTGGDVETKETNRFDVEKKTVEVANRALGQR
Ga0207676_1207281513300026095Switchgrass RhizosphereHSIEFGDDTFFIRVTGGDVETKETLRFDVEKKTVEVANRAQGQR
Ga0209378_110083013300026528SoilDDTFFIRVTGGDVETKKTLRFDLEKKTVQVADRAQGQR
Ga0209058_133566813300026536SoilHSIEYGDDTFFIRVTGGDVESKKTLRFDLEKKTVQVADRAQGQR
Ga0209056_1003931613300026538SoilFFIRVTGGDVESKKTLRFDLEKKSVQVADRAQGQR
Ga0209577_1021936313300026552SoilSIEYGDDTFFIRVTGGDVETKKTLRFDLEKKTVQVADRAQGQR
Ga0207591_10756333300026827SoilYGDDTFFIRVTGGDVETKQTLKFDKDRKTVEVANRAMGQR
Ga0209843_104971723300027511Groundwater SandSIEYGDDTFFIRVTGGDVESQKTLRFDLEKKSVNVADRAFGQR
Ga0209701_1042940833300027862Vadose Zone SoilIEFGDDTFFLRVTGGDVESKETRRFDVEKKTVEIANRALGQR
Ga0207428_1001393193300027907Populus RhizosphereIFIRVTGGDVESKQTFRFDPEKDTVEVANRALGQR
Ga0209382_1024418613300027909Populus RhizosphereEFGDDTFFLRVTGGDVETKETHRFDVDKKTVEIANRALGQR
Ga0256864_115668623300027964SoilIHSIEFGDDTFFIRVTGGDVETQKTLKFDPDRKTVEVADRALNQR
Ga0247824_1007530013300028809SoilTFFIRVTGGDVETKQTLKFDAEKKTVEVANRAMGQR
Ga0307278_1035642923300028878SoilIEFGDDTFFLRVTGGDVETKKTLKFDLEKKTVEVADRAMNQR
Ga0308205_103178813300030830SoilHSIAYGDDTFFIRVTGGDVEKHKTLRFNLDKQTVEVEDRGQRPR
(restricted) Ga0255310_1008956933300031197Sandy SoilDTFFIRVTGGDVETKETRRFDLEKKTVEIANRANGQR
Ga0299914_1001025373300031228SoilMSQDTLDGDVETKKTLRFDAEQKTAKVTDRALNQR
Ga0310888_1036782013300031538SoilEFGDDTFFIRVTGGDVETKETNRFDVEKKTVEVANRAVGQR
Ga0310813_1182288913300031716SoilEFGDDTFFIRVTGGDVETKETHRFDVEKKTVEVVNRALGQR
Ga0307468_10047788313300031740Hardwood Forest SoilHSIEYGDDTFFIRVTGGDVETKKTNKFDPDKKTVEVADRSRGQR
Ga0318535_1011348023300031764SoilFFIRVTGGDVETKKTLRFDPEKKTVQIADRAQGQR
Ga0310917_1028844413300031833SoilGDDTFFIRVTGGDVETKKTLRFDPEKKTVQIADRAQGQR
Ga0318522_1029792413300031894SoilEYGDDTIFIRVTGGDVETKKTLRFDPEKKSVQIADRAQGQR
Ga0318520_1101696013300031897SoilEYGDDTFFIRVTGGDVETKKTLRFDPEKKSVQIADRAQGQR
Ga0307470_1093631833300032174Hardwood Forest SoilDDTFFIRVTGGDVESKETNRFDVEKKTVEVANRALGQR
Ga0307472_10247523713300032205Hardwood Forest SoilFGDDTFFIRVTGGDVETKETLKFDVEKKTVEIANRALGQR
Ga0364930_0076585_2_1303300033814SedimentIEFGDDTFFIRVTGGDVETKETLRFNVKQKTVEVANRAQGQR
Ga0373893_062293_2_1153300034056Sediment SlurryDTFFIQVTGGDVETKETLRFDVDKRTVEIADRARGQQ
Ga0326723_0270576_651_7583300034090Peat SoilFFIRVTGGDVETKETHRFDVEKKTVEVANRALGQR
Ga0370545_116571_442_5883300034643SoilVGDIYSIEFGDDTFFIRVTGGDVETKETHRFDVEKKTMEIANRAKGQR
Ga0314786_072078_2_1333300034664SoilSIEYGDDTFFIRVTGGDVETKKTLRFDLEKKSVQIADRAQGQR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.