Metagenome Family F087057

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087057
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	47 residues
Representative Sequence	VIRKRVIFTVFLGVMTVLSGVMLTSAGLIYYTGFLDGRKGCDAAGLNR
Number of Associated Samples	40
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	14.68 %
% of genes near scaffold ends (potentially truncated)	9.09 %
% of genes from short scaffolds (< 2000 bps)	80.00 %
Associated GOLD sequencing projects	31
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.455 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (66.364 % of family members)
Environment Ontology (ENVO)	Unclassified (95.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF12385	Peptidase_C70	15.45
PF13529	Peptidase_C39_2	6.36
PF16778	Phage_tail_APC	0.91
PF13550	Phage-tail_3	0.91
PF13884	Peptidase_S74	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
All Organisms	root	All Organisms	24.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Viruses	superkingdom	All Organisms → Viruses	24.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	17.27 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	17.27 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	17.27 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17.27 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	17.27 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2.73 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.91 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001965\|GOS2243_1072361	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1714	Open in IMG/M
3300002488\|JGI25128J35275_1006662	Not Available	3111	Open in IMG/M
3300006735\|Ga0098038_1008295	All Organisms → Viruses	4142	Open in IMG/M
3300006735\|Ga0098038_1017858	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	2722	Open in IMG/M
3300006735\|Ga0098038_1021872	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2428	Open in IMG/M
3300006735\|Ga0098038_1022732	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2377	Open in IMG/M
3300006735\|Ga0098038_1048479	Not Available	1539	Open in IMG/M
3300006735\|Ga0098038_1062386	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1330	Open in IMG/M
3300006735\|Ga0098038_1146578	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	789	Open in IMG/M
3300006735\|Ga0098038_1149966	Not Available	777	Open in IMG/M
3300006735\|Ga0098038_1188209	All Organisms → Viruses	672	Open in IMG/M
3300006735\|Ga0098038_1228373	Not Available	594	Open in IMG/M
3300006735\|Ga0098038_1252972	Not Available	556	Open in IMG/M
3300006735\|Ga0098038_1281461	Not Available	519	Open in IMG/M
3300006735\|Ga0098038_1289242	Not Available	511	Open in IMG/M
3300006737\|Ga0098037_1109615	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	951	Open in IMG/M
3300006737\|Ga0098037_1121828	Not Available	891	Open in IMG/M
3300006737\|Ga0098037_1167691	Not Available	731	Open in IMG/M
3300006737\|Ga0098037_1177320	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	705	Open in IMG/M
3300006737\|Ga0098037_1205533	All Organisms → Viruses	643	Open in IMG/M
3300006737\|Ga0098037_1298094	Not Available	509	Open in IMG/M
3300006749\|Ga0098042_1002461	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	6699	Open in IMG/M
3300006749\|Ga0098042_1062103	All Organisms → Viruses	993	Open in IMG/M
3300006749\|Ga0098042_1063152	All Organisms → Viruses	982	Open in IMG/M
3300006749\|Ga0098042_1076958	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	868	Open in IMG/M
3300006749\|Ga0098042_1121152	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	653	Open in IMG/M
3300006752\|Ga0098048_1154778	Not Available	683	Open in IMG/M
3300006922\|Ga0098045_1105356	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	663	Open in IMG/M
3300006929\|Ga0098036_1088919	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	951	Open in IMG/M
3300006929\|Ga0098036_1229675	Not Available	562	Open in IMG/M
3300007963\|Ga0110931_1070799	Not Available	1052	Open in IMG/M
3300007963\|Ga0110931_1117756	Not Available	799	Open in IMG/M
3300009550\|Ga0115013_10097740	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1668	Open in IMG/M
3300009550\|Ga0115013_10252938	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1074	Open in IMG/M
3300009550\|Ga0115013_11387568	Not Available	521	Open in IMG/M
3300010148\|Ga0098043_1027131	Not Available	1813	Open in IMG/M
3300010148\|Ga0098043_1033568	Not Available	1608	Open in IMG/M
3300010148\|Ga0098043_1134502	Not Available	706	Open in IMG/M
3300010148\|Ga0098043_1155568	Not Available	645	Open in IMG/M
3300010148\|Ga0098043_1170837	Not Available	609	Open in IMG/M
3300010148\|Ga0098043_1175187	Not Available	600	Open in IMG/M
3300010148\|Ga0098043_1179961	Not Available	590	Open in IMG/M
3300010149\|Ga0098049_1224321	Not Available	573	Open in IMG/M
3300010153\|Ga0098059_1296688	Not Available	618	Open in IMG/M
3300012920\|Ga0160423_10002703	Not Available	14769	Open in IMG/M
3300012920\|Ga0160423_10135298	Not Available	1733	Open in IMG/M
3300012920\|Ga0160423_10683730	Not Available	693	Open in IMG/M
3300012920\|Ga0160423_10757793	Not Available	654	Open in IMG/M
3300012920\|Ga0160423_10896369	Not Available	595	Open in IMG/M
3300012920\|Ga0160423_10906556	Not Available	591	Open in IMG/M
3300012920\|Ga0160423_10977804	Not Available	567	Open in IMG/M
3300012928\|Ga0163110_10706019	Not Available	787	Open in IMG/M
3300012936\|Ga0163109_10008686	All Organisms → Viruses	7587	Open in IMG/M
3300012936\|Ga0163109_10470105	Not Available	921	Open in IMG/M
3300012936\|Ga0163109_10658907	Not Available	766	Open in IMG/M
3300012936\|Ga0163109_10885586	Not Available	652	Open in IMG/M
3300012936\|Ga0163109_11396249	Not Available	510	Open in IMG/M
3300012954\|Ga0163111_10380280	Not Available	1276	Open in IMG/M
3300012954\|Ga0163111_10565158	Not Available	1057	Open in IMG/M
3300012954\|Ga0163111_12347781	Not Available	541	Open in IMG/M
3300017708\|Ga0181369_1024652	Not Available	1444	Open in IMG/M
3300017708\|Ga0181369_1043459	Not Available	1023	Open in IMG/M
3300017709\|Ga0181387_1086838	Not Available	635	Open in IMG/M
3300017732\|Ga0181415_1121181	Not Available	588	Open in IMG/M
3300017759\|Ga0181414_1099311	Not Available	766	Open in IMG/M
3300017767\|Ga0181406_1008179	All Organisms → Viruses	3450	Open in IMG/M
3300017771\|Ga0181425_1050188	Not Available	1358	Open in IMG/M
3300017786\|Ga0181424_10292815	Not Available	676	Open in IMG/M
3300020258\|Ga0211529_1069011	Not Available	601	Open in IMG/M
3300020264\|Ga0211526_1017975	Not Available	1162	Open in IMG/M
3300020378\|Ga0211527_10025779	Not Available	1982	Open in IMG/M
3300020388\|Ga0211678_10221636	Not Available	787	Open in IMG/M
3300020417\|Ga0211528_10165258	Not Available	864	Open in IMG/M
3300020417\|Ga0211528_10270917	Not Available	639	Open in IMG/M
3300020421\|Ga0211653_10031699	Not Available	2449	Open in IMG/M
3300020438\|Ga0211576_10007599	Not Available	7080	Open in IMG/M
3300025086\|Ga0208157_1006868	Not Available	3995	Open in IMG/M
3300025086\|Ga0208157_1017094	Not Available	2266	Open in IMG/M
3300025086\|Ga0208157_1017270	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2251	Open in IMG/M
3300025086\|Ga0208157_1019625	Not Available	2075	Open in IMG/M
3300025086\|Ga0208157_1021447	Not Available	1959	Open in IMG/M
3300025086\|Ga0208157_1025722	Not Available	1742	Open in IMG/M
3300025086\|Ga0208157_1026213	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1721	Open in IMG/M
3300025086\|Ga0208157_1027529	Not Available	1665	Open in IMG/M
3300025086\|Ga0208157_1038407	Not Available	1341	Open in IMG/M
3300025086\|Ga0208157_1051288	Not Available	1108	Open in IMG/M
3300025086\|Ga0208157_1066131	Not Available	932	Open in IMG/M
3300025086\|Ga0208157_1073913	Not Available	864	Open in IMG/M
3300025101\|Ga0208159_1000671	Not Available	13420	Open in IMG/M
3300025101\|Ga0208159_1094128	Not Available	544	Open in IMG/M
3300025101\|Ga0208159_1094431	Not Available	542	Open in IMG/M
3300025101\|Ga0208159_1101825	Not Available	510	Open in IMG/M
3300025102\|Ga0208666_1006753	Not Available	4212	Open in IMG/M
3300025102\|Ga0208666_1018123	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2272	Open in IMG/M
3300025102\|Ga0208666_1128059	Not Available	593	Open in IMG/M
3300025102\|Ga0208666_1141744	Not Available	546	Open in IMG/M
3300025110\|Ga0208158_1131406	Not Available	576	Open in IMG/M
3300025128\|Ga0208919_1107588	Not Available	893	Open in IMG/M
3300025128\|Ga0208919_1139919	Not Available	756	Open in IMG/M
3300025128\|Ga0208919_1243165	Not Available	525	Open in IMG/M
3300025132\|Ga0209232_1205006	Not Available	600	Open in IMG/M
3300025151\|Ga0209645_1032210	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1924	Open in IMG/M
3300027859\|Ga0209503_10213732	Not Available	928	Open in IMG/M
3300029318\|Ga0185543_1000135	Not Available	22620	Open in IMG/M
3300029318\|Ga0185543_1000187	Not Available	19071	Open in IMG/M
3300029318\|Ga0185543_1005022	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	3507	Open in IMG/M
3300029318\|Ga0185543_1059484	Not Available	796	Open in IMG/M
3300029318\|Ga0185543_1065454	Not Available	747	Open in IMG/M
3300029318\|Ga0185543_1088609	Not Available	609	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	80.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.73%
Strait	Environmental → Aquatic → Marine → Strait	5.45%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	66.36%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	14.55%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.73%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	66.36%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	14.55%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	12.73%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	5.45%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001965	Marine microbial communities from Coastal Floreana, Equador - GS028	Environmental	Open in IMG/M
3300002488	Marine viral communities from the Pacific Ocean - ETNP_2_60	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017709	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27	Environmental	Open in IMG/M
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300020258	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)	Environmental	Open in IMG/M
3300020264	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020388	Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)	Environmental	Open in IMG/M
3300020417	Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025101	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025110	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300027859	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300029318	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GOS2243_10723615	3300001965	Marine	MIRKRVIFAVFLGAMTVLSGAMLSGAALVYYTGFLDGNKRCSTAGLVR*
JGI25128J35275_10066623	3300002488	Marine	VIRKRVIFTVLLGVMTVLSGVVLTSGGLIYYAGFLDGSKGCDAAGLER*
Ga0098038_10082955	3300006735	Marine	VIRKRVIFAIFIGMLTVLSGTVLSAAGLIYYTGFLDGNKRCDTAGLAR*
Ga0098038_10178586	3300006735	Marine	VIRKRVVFAIFIGVLTVLSGVMLTSAGLIYYAGFLDGGRGCDAAALSQ*
Ga0098038_10218722	3300006735	Marine	VIRKRVIFAIFIGMMTILSGVMLTSAGLIYYTGFLDGNKGCDAAGLER*
Ga0098038_10227324	3300006735	Marine	MIRKRIIFAVLLGMMTVLSSIVLTSGALIYYTGFLDGNKGCDAAGLER*
Ga0098038_10484791	3300006735	Marine	VIRKRVVFAIFIGVLTVLSGVMLTSAGLIYYAGFLDGNKRCDAGKLR*
Ga0098038_10623865	3300006735	Marine	MIRKRIVFAVLLGAITTLSGVVLTSGALIYYTGFLDGNKRCSTAGLVR*
Ga0098038_11213432	3300006735	Marine	FAVFLGILSILSAMLLSAAGLVYYTGFLDGSKRCEAAGLTR*
Ga0098038_11465782	3300006735	Marine	VIRKRVIFTVLLGIMTALSGVMLTSAGLIYYTGFLDGSKGCDAAALDR*
Ga0098038_11499662	3300006735	Marine	VIRKRVIFTVLLGIMTALSGVMLTSAGLIYYAGFLDGNKRCNAAGLTR*
Ga0098038_11882092	3300006735	Marine	MIRKRIVFAVFLGAMTVLSGGMLSAAGLVYYTGFLDGNKRCSTAGLVR*
Ga0098038_12283732	3300006735	Marine	MIRKRIVFAVLLGAMTTLSGVVLTSGALIYYAGFLDGDRGCNAAGLVR*
Ga0098038_12529722	3300006735	Marine	MIRKRIVFAFFLGVMTVLSSVMLSAAGLVYYTGFLDGAKQCQAGKLK*
Ga0098038_12814612	3300006735	Marine	MIRKRIVFAVFLGAMTVLSGGMLSAGGLVYYTGFLDGAKQCQAGKLK*
Ga0098038_12892423	3300006735	Marine	VIRKRVIFTVLLGITTALSGVMLTSAGLIYYAGFLDGNKGCDAAGLER*
Ga0098037_11096151	3300006737	Marine	MIRKRIVFAVLLGAITTLSGVVLTSGALIYYAGFLDGDRGCNAAGLVR
Ga0098037_11218282	3300006737	Marine	VIRKRVIFTVLLGIMTALSGVMLTSAGLIYYTGFLDGSKSCEAGKLR*
Ga0098037_11676912	3300006737	Marine	VIRKRVIFTVLLGITTALSGVMLTSAGLIYYTGFLDGSKGCDAAALDR*
Ga0098037_11773203	3300006737	Marine	VIRKRVIFTVLLGVMTALSGVMLTSAGLIYYAGFLDGSKGCDAAGLER*
Ga0098037_12055332	3300006737	Marine	MIRKRIVFAVFLGVMTVISSLMLSAAGLVYYTGFLDGNKRCSTAGLVQ*
Ga0098037_12980942	3300006737	Marine	MIRKRIVFAVFLGAMTVLSGGMLSAAGLVYYTGFLDGAKQCQAGKLK*
Ga0098042_10024612	3300006749	Marine	MIRKRIVFAVFVGAMTMLSGAILSGAALVYYTGFLDGTKQCQAGKLK*
Ga0098042_10621032	3300006749	Marine	LIRKRVIFAVFLGMLSILSAMLLSAAGLVYYTGFLDGSKRCEAAGLTR*
Ga0098042_10631522	3300006749	Marine	VIRKRVIFLVLLVIMTVMSGVMLTSAGLIYYTGFLDGNKGCDAAGLVR*
Ga0098042_10769581	3300006749	Marine	VIRKRVIFAIFIGILTVLSGVMLTSAGLIYYAGFLDGGRGCDAAALSQ*
Ga0098042_11211523	3300006749	Marine	VIRKRVIFAIFIGLLTALSGLILTGGGLLYYTGFLDGNKRCDAGKLR*
Ga0098048_11547781	3300006752	Marine	KRIVFAFFLGVMTVLSSVMLSAAGLVYYTGFLDGAKQCQAGKLK*
Ga0098045_11053563	3300006922	Marine	VIRKRVIFAIFIGLLTALSGLILTGGGFLYYTGFLDGSKGCNAAALDR*
Ga0098036_10889195	3300006929	Marine	VIRKRVIFAIFIGLLTALSGLILTGGGLLYYTGFLDGNKRCDA
Ga0098036_12296752	3300006929	Marine	VIRKRVVFAIFIGILTVLSGVMLTSAGLIYYTGFLDGNKRCDTGKLI*
Ga0110931_10707993	3300007963	Marine	VIRKRVIFTVLLGVMTVLSGVVLTSGGLIYYAGFLDGNKGCDAAGLER*
Ga0110931_11177563	3300007963	Marine	MIRKRVIFAVLLGMLAVLSTVLLSAAGLIYYTGFLDGSKGCDTAGLMR*
Ga0115013_100977402	3300009550	Marine	VIRKRVIFTVLLGIMTALSGVMLTSAGLIYYTGFLDGNKRCDAAGLTR*
Ga0115013_102529385	3300009550	Marine	VIRKRVIFAIFIGLLTALSGVMLTSAGLIYYTGFLDGSKGCDAAGLDE*
Ga0115013_113875682	3300009550	Marine	VIRKRVIFLVLLVIMTVMSGVMLTSAGLIYYTGFLDGGKGCDAAGLER*
Ga0098043_10271312	3300010148	Marine	VIRKRVIFTVLLGVMTVLSGVMLSAGGLIYYTGFLDGNKRCEAAGLTR*
Ga0098043_10335683	3300010148	Marine	MIRKRVIFTIFVGMLTALSGVMLTCAGLIYYTGFLDGSKGCDAAALDR*
Ga0098043_11345021	3300010148	Marine	VIRKRVIFTVLLGVTTVLSGVMLTSAGLIYYAGFLDGSKRCDAAGLER*
Ga0098043_11555682	3300010148	Marine	MIRKRVIFVVFLGVVTVLSGAMLSGAALVYYAGFLDGNKRCDTAVLAR*
Ga0098043_11708372	3300010148	Marine	VIRKRIIFTVLLGVLAVLSGVMPSAAGLIYYTGFLDGNKRCDAAGLTR*
Ga0098043_11751871	3300010148	Marine	VIRKRVIFAIFIGLLTALSGLILTGGGLLYYTGFLDGNKRCDAAGLTR*
Ga0098043_11799612	3300010148	Marine	MIRKRIVFAVFLGVMTVLSSFMLSAAGLVYYTGFLDGAKQCQAGKLK*
Ga0098049_12243212	3300010149	Marine	VIRKRVIFTVLLGVTTVLSGVMLTSAGLIYYAGFLDGSKGCDAAGLER*
Ga0098059_12966881	3300010153	Marine	MIRKRVIFAVLLGMLAVLSTILLSAAGLIYYTGFLDGGKGCDTAGLMR*
Ga0160423_100027035	3300012920	Surface Seawater	MIRKRVIFAVLLGMMTVLSGVVLTSGALIYYTGFLDGNKRCSTAGLVR*
Ga0160423_101352982	3300012920	Surface Seawater	MIRKRVIFAVFLGVMTVLSGVVLTSGALIYYTGFLDGSKRCDAAGLVR*
Ga0160423_106837302	3300012920	Surface Seawater	VIRKRVIFTVLLGVMTVLSGVMLTSAGLIYYTGFLDGTKGCDSAGLER*
Ga0160423_107577932	3300012920	Surface Seawater	VIRKRVIFAVFLGMLSILSSMLLSAAGLLYYTGFLDGSKRCEAAALTR*
Ga0160423_108963692	3300012920	Surface Seawater	MIRKRIVFAVLLGAMTMLSGVVLTSGALIYYAGFLDGDRGCNAAGLVR*
Ga0160423_109065563	3300012920	Surface Seawater	VIRKRVIFAILLGALTLLSGVMLTSAGLIYYAGFLDGSKRCDAAGL
Ga0160423_109778042	3300012920	Surface Seawater	MVRKRVIFAILLGMMTILSAMMLSGAGLVYYTGFLDGSKGCDTAGLTR*
Ga0163110_107060191	3300012928	Surface Seawater	VIRKRVIFTVLLGIMTALSGVMLTSAGLIYYTGFLDGSKGCDAAGLER*
Ga0163109_1000868613	3300012936	Surface Seawater	VIRKRVIFTVFLGVMTVLCGVMLTSAGLIYYTGFLDGRKGCDAAGLNR*
Ga0163109_104701052	3300012936	Surface Seawater	MVRKRVIFAILLGVMTILSAMMRSSAGLVYYTGFLDGSKGCDTAGLTR*
Ga0163109_106589072	3300012936	Surface Seawater	VIRKRVIFAIFIGMLTVLSGVMLASAGLVYYTGFLDGNKRCDAAALDR*
Ga0163109_108855862	3300012936	Surface Seawater	MIRKRVIFAVLLGVMTVLSGVMLSGAALVYYTGFLDGNKRCSTAGLVR*
Ga0163109_113962491	3300012936	Surface Seawater	MIRKRVIFAIFIGMLTVLSGVMLTSAGLIYYTGFLDGSKGCDAAGLER*
Ga0163111_103802804	3300012954	Surface Seawater	MIRKRIVFAVLLGAMTTLSGVVLTSGALIYYAGFLDGGRGCDAAGLVR*
Ga0163111_105651582	3300012954	Surface Seawater	VIRKRVIFTVLLGVMTVLSGVMLTSAGLIYYTGFLDGSKSCETGKLR*
Ga0163111_123477811	3300012954	Surface Seawater	IFAVLLGAMTMLSGAILSGAALVYYTGFLDGAKQCQAGKLK*
Ga0181369_10246523	3300017708	Marine	VIRKRVIFAVLLGMLAVLSTVLLSAAGLIYYTGFLDGSKGCDTAGLMR
Ga0181369_10434591	3300017708	Marine	MIRKRVIFLVFLGVVTVLSGAMLSGAALVYYAGFLDGGKGCDAAGLVR
Ga0181387_10868383	3300017709	Seawater	VIRKRVIFAIFIGMLTVLSGTLLSAAGLIYYTGFLDGNKRC
Ga0181415_11211811	3300017732	Seawater	VIRKRVVFAIFLGVLTVMSGAMLAGAGLIYYAGFLDGGRGCDAAALSQ
Ga0181414_10993112	3300017759	Seawater	VFAIFLGVLTVMSGAMLAGAGLIYYAGFLDGGRGCDAAALSQ
Ga0181406_10081792	3300017767	Seawater	VIRKRVIFAVFIGLMSALAGILLSAAGLVYYTGFLDGTKGCDTAGLAR
Ga0181425_10501882	3300017771	Seawater	MIRKRIVFAVLLGVMTVLSSAMLTGAGLIYYTGFLDGGRGCDAAALSQ
Ga0181424_102928151	3300017786	Seawater	MIRKRIVFAVLLGVMTVLSSAMLTGAGLIYYTGFLDGNKRCDAGKLR
Ga0211529_10690112	3300020258	Marine	MIRKRLIFAVFLGVMTVLSGVVLTSGALIYYTGFLDGSKRCDAAGLVR
Ga0211526_10179752	3300020264	Marine	VIRKRVIFTVFLGVMTVLSGVMLTSAGLIYYTGFLDGRKGCDAAGLNR
Ga0211527_100257793	3300020378	Marine	MIRKRVIFAVFLGVMTVLSGVVLTSGALIYYTGFLDGSKRCGAAGLVR
Ga0211678_102216362	3300020388	Marine	VIRKRVIFAIFIGMLTVLSGTLLSAAGLVYYTGFLDGNKRCDTAGLAR
Ga0211528_101652582	3300020417	Marine	MIRKRVVLAVLMGVMMVLSGIMLSAGAFVYYSGFLDGSKRCEAGTLK
Ga0211528_102709172	3300020417	Marine	MIRKRVIFAILLGMMTILSAMMLSGAGLVYYTGFLDGSKGCDTAGLTR
Ga0211653_100316994	3300020421	Marine	MIRKRVIFAVLLGMLAVLSTILLSAAGLIYYTGFLDGGKGCDTAGLMR
Ga0211576_100075997	3300020438	Marine	VIRKRVIFAIFIGMLTVLSGTLLSAAGLIYYTGFLDGNKRCDTAGLAR
Ga0208157_10068684	3300025086	Marine	MIRKRIIFAVLLGMMTVLSSIVLTSGALIYYTGFLDGNKGCDAAGLER
Ga0208157_10170946	3300025086	Marine	MIRKRIVFAVFLGAMTVLSGGMLSAAGLVYYTGFLDGNKRCSTAGLVR
Ga0208157_10172702	3300025086	Marine	VIRKRVIFAIFIGLLTALSGLILTGGGLLYYTGFLDGNKRCDAAGLTR
Ga0208157_10196253	3300025086	Marine	VIRKRVIFAIFIGMMTILSGVMLTSAGLIYYTGFLDGNKGCDAAGLER
Ga0208157_10214471	3300025086	Marine	MIRKRIVFAVLLGAMTTLSGVVLTSGALIYYAGFLDGDRGCNAAGLVR
Ga0208157_10257223	3300025086	Marine	VIRKRVIFTVLLGVMTALSGVMLTSAGLIYYAGFLDGSKGCDAAGLER
Ga0208157_10262135	3300025086	Marine	VIRKRIIFTVLLGVLAVLSGVMLSAAGLIYYTGFLDGNKRCDAAGLTR
Ga0208157_10275292	3300025086	Marine	VIRKRVIFTVLLGIMTALSGVMLTSAGLIYYTGFLDGSKSCEAGKLR
Ga0208157_10384072	3300025086	Marine	MIAKRIIFAVLLAAVTVLSGAMLTAAGLVYYTGFLDGNKGCDAAGLTR
Ga0208157_10512882	3300025086	Marine	VIRKRVIFTVLLGVTTVLSGVMLTSAGLIYYAGFLDGSKRCDAAGLER
Ga0208157_10661312	3300025086	Marine	VIRKRVIFTVLLGIMTALSGVMLTSAGLIYYTGFLDGSKGCDAAALDR
Ga0208157_10739132	3300025086	Marine	VIRKRVVFAIFIGVLTVLSGVMLTSAGLIYYAGFLDGGRGCDAAALSQ
Ga0208159_10006712	3300025101	Marine	MIRKRIVFAVFVGAMTMLSGAILSGAALVYYTGFLDGTKQCQAGKLK
Ga0208159_10941282	3300025101	Marine	VIRKRVVFAIFIGVLTVLSGVMLTSAGLIYYAGFLDGNKRCDAGKLR
Ga0208159_10944312	3300025101	Marine	MIRKRIVFAVFLGVMTVLSSFMLSAAGLVYYTGFLDGAKQCQAGKLK
Ga0208159_11018252	3300025101	Marine	MIRKRIVFAFFLGVMTVLSSVMLSAAGLVYYTGFLDGAKQCQAGKLK
Ga0208666_10067535	3300025102	Marine	VIRKRVIFAIFIGMLTVLSGTVLSAAGLIYYTGFLDGNKRCDTAGLAR
Ga0208666_10181232	3300025102	Marine	VIRKRVIFTVLLGVTTVLSGVMLTSAGLIYYAGFLDGSKGCDAAGLER
Ga0208666_11280592	3300025102	Marine	MIRKRVIFVVFLGVVTVLSGAMLSGAALVYYAGFLDGNKRCDTAVLAR
Ga0208666_11417441	3300025102	Marine	VIRKRVIFTVLLGVMTVLSGVMLTSAGLIYYAGFLDGNKRCDAAGLTR
Ga0208158_11314061	3300025110	Marine	VIRKRVIFAIFIGLLTALSGLILTGGGLLYYTGFL
Ga0208919_11075883	3300025128	Marine	VIRKRVVFAIFIGILTVLSGVMLTSAGLIYYTGFLDGNKRCDTGKLI
Ga0208919_11399192	3300025128	Marine	VIRKRVIFTVLLGVMTVLSGVMLTSAGLIYYTGFLDGSKGCDAARLER
Ga0208919_12431652	3300025128	Marine	MIRKRVIFAVLLGMLAVLSTVLLSAAGLIYYTGFLDGSKGCDTAGLMR
Ga0209232_12050062	3300025132	Marine	VIRKRVIFTVLLGVMTVLSGVMLSAGGLIYYTGFLDGNKRCEAAGLTR
Ga0209645_10322105	3300025151	Marine	VIRKRVIFAIFIVLLTALSGVMLTSAGLIYYAGFLDGNKRCDAAALDR
Ga0209503_102137324	3300027859	Marine	VIRKRVIFLVLLVIMTVMSGVMLTSAGLIYYTGFLDGGKGCDAAGLER
Ga0185543_100013530	3300029318	Marine	VIRKRVIFTVFLGIMTALSGVMLTSAGLIYYTGFLDGNKRCDAAGLTR
Ga0185543_100018720	3300029318	Marine	MIRKRVIFAVLLGMMTVLSGVVLTSGALIYYTGFLDGSKRCATAGLER
Ga0185543_10050227	3300029318	Marine	MIRKRVIFAVFLGVMTVLSGVVLTSGALIYYTGFLDGSKRCDAAGLVR
Ga0185543_10594842	3300029318	Marine	MIRKRVIFAIFIGMLTVLSGITLTGAGLIYYAGFLDGSKGCDAAALER
Ga0185543_10654542	3300029318	Marine	MVRKRVIFAILLGVMTILSGMMLSGAGLVYYTGFLDGSKGCDTSGLAR
Ga0185543_10886092	3300029318	Marine	MIRKRVIFTVILGVMTVMSGVVLTSAGLIYYAGFVDGNKACDTPALAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087057

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences