NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F087109

Metagenome / Metatranscriptome Family F087109

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F087109
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 46 residues
Representative Sequence MAFLAWHIIAILTVMAGSFLIGYSIGKKDERVNYKFADKLKNIFKK
Number of Associated Samples 70
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 70.64 %
% of genes near scaffold ends (potentially truncated) 38.18 %
% of genes from short scaffolds (< 2000 bps) 76.36 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (90.909 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(30.000 % of family members)
Environment Ontology (ENVO) Unclassified
(85.455 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(87.273 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 67.39%    β-sheet: 0.00%    Coil/Unstructured: 32.61%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF02839CBM_5_12 6.36
PF01126Heme_oxygenase 2.73
PF04984Phage_sheath_1 0.91
PF06841Phage_T4_gp19 0.91
PF01391Collagen 0.91
PF05118Asp_Arg_Hydrox 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG3230Heme oxygenaseInorganic ion transport and metabolism [P] 2.73
COG5398Heme oxygenaseCoenzyme transport and metabolism [H] 2.73
COG3497Phage tail sheath protein FIMobilome: prophages, transposons [X] 0.91
COG3555Aspartyl/asparaginyl beta-hydroxylase, cupin superfamilyPosttranslational modification, protein turnover, chaperones [O] 0.91


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A90.91 %
All OrganismsrootAll Organisms9.09 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002835|B570J40625_100111387Not Available3312Open in IMG/M
3300003277|JGI25908J49247_10007129Not Available3536Open in IMG/M
3300003277|JGI25908J49247_10018002Not Available2126Open in IMG/M
3300003388|JGI25910J50241_10000239Not Available17908Open in IMG/M
3300003388|JGI25910J50241_10049011All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300003388|JGI25910J50241_10135126Not Available651Open in IMG/M
3300003388|JGI25910J50241_10146424Not Available617Open in IMG/M
3300003393|JGI25909J50240_1113566Not Available535Open in IMG/M
3300003394|JGI25907J50239_1017388Not Available1626Open in IMG/M
3300003404|JGI25920J50251_10023425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1938Open in IMG/M
3300003429|JGI25914J50564_10152591Not Available555Open in IMG/M
3300003986|Ga0063233_10280285Not Available517Open in IMG/M
3300004096|Ga0066177_10003187Not Available4541Open in IMG/M
3300004125|Ga0066182_10083697Not Available750Open in IMG/M
3300004763|Ga0007746_1387130Not Available542Open in IMG/M
3300004789|Ga0007752_11166928Not Available534Open in IMG/M
3300004794|Ga0007751_11406278Not Available800Open in IMG/M
3300005517|Ga0070374_10240582Not Available927Open in IMG/M
3300005517|Ga0070374_10532087Not Available585Open in IMG/M
3300005580|Ga0049083_10003668Not Available5843Open in IMG/M
3300005581|Ga0049081_10002115All Organisms → cellular organisms → Bacteria7481Open in IMG/M
3300005581|Ga0049081_10018709Not Available2627Open in IMG/M
3300005581|Ga0049081_10115667Not Available994Open in IMG/M
3300005581|Ga0049081_10182766Not Available757Open in IMG/M
3300005581|Ga0049081_10301898Not Available551Open in IMG/M
3300005582|Ga0049080_10039730All Organisms → cellular organisms → Bacteria1635Open in IMG/M
3300005582|Ga0049080_10112114Not Available924Open in IMG/M
3300005582|Ga0049080_10274745Not Available546Open in IMG/M
3300005805|Ga0079957_1039506Not Available3010Open in IMG/M
3300005805|Ga0079957_1087945Not Available1733Open in IMG/M
3300005805|Ga0079957_1151605Not Available1179Open in IMG/M
3300006639|Ga0079301_1002147Not Available8793Open in IMG/M
3300006639|Ga0079301_1006974All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M4452Open in IMG/M
3300006639|Ga0079301_1016365Not Available2652Open in IMG/M
3300006639|Ga0079301_1216884Not Available544Open in IMG/M
3300007162|Ga0079300_10049096Not Available1346Open in IMG/M
3300008117|Ga0114351_1156389All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1908Open in IMG/M
3300009183|Ga0114974_10022425Not Available4438Open in IMG/M
3300010885|Ga0133913_10067634Not Available9580Open in IMG/M
3300010885|Ga0133913_10086826Not Available8387Open in IMG/M
3300013004|Ga0164293_10332249Not Available1043Open in IMG/M
3300013005|Ga0164292_10279564Not Available1149Open in IMG/M
(restricted) 3300013126|Ga0172367_10031147All Organisms → cellular organisms → Bacteria4654Open in IMG/M
(restricted) 3300013126|Ga0172367_10119444Not Available1808Open in IMG/M
(restricted) 3300013126|Ga0172367_10404252Not Available772Open in IMG/M
(restricted) 3300013129|Ga0172364_10810794Not Available576Open in IMG/M
(restricted) 3300013131|Ga0172373_10149580Not Available1660Open in IMG/M
(restricted) 3300013131|Ga0172373_10643228Not Available630Open in IMG/M
(restricted) 3300013131|Ga0172373_10932551Not Available502Open in IMG/M
(restricted) 3300013137|Ga0172375_10432927Not Available898Open in IMG/M
3300017736|Ga0181365_1168759Not Available514Open in IMG/M
3300017778|Ga0181349_1284734Not Available540Open in IMG/M
3300017778|Ga0181349_1285547Not Available539Open in IMG/M
3300017784|Ga0181348_1071865Not Available1384Open in IMG/M
3300017784|Ga0181348_1082131Not Available1277Open in IMG/M
3300017784|Ga0181348_1231407Not Available648Open in IMG/M
3300017785|Ga0181355_1382345Not Available512Open in IMG/M
3300019784|Ga0181359_1013777Not Available2952Open in IMG/M
3300020074|Ga0194113_10008616Not Available12514Open in IMG/M
3300020141|Ga0211732_1162415Not Available945Open in IMG/M
3300020151|Ga0211736_10069511Not Available1005Open in IMG/M
3300020151|Ga0211736_10099888Not Available1923Open in IMG/M
3300020151|Ga0211736_10752483Not Available615Open in IMG/M
3300020151|Ga0211736_10820159Not Available880Open in IMG/M
3300020159|Ga0211734_10863929Not Available663Open in IMG/M
3300020160|Ga0211733_10360389Not Available1774Open in IMG/M
3300020160|Ga0211733_10486812Not Available1954Open in IMG/M
3300020160|Ga0211733_10502661Not Available583Open in IMG/M
3300020160|Ga0211733_10771141Not Available550Open in IMG/M
3300020161|Ga0211726_10072725Not Available610Open in IMG/M
3300020162|Ga0211735_10860992Not Available500Open in IMG/M
3300020172|Ga0211729_10673187Not Available1025Open in IMG/M
3300020172|Ga0211729_11169591Not Available1191Open in IMG/M
3300020196|Ga0194124_10336605Not Available714Open in IMG/M
3300020205|Ga0211731_10370501All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1200Open in IMG/M
3300020205|Ga0211731_11072652Not Available674Open in IMG/M
3300020205|Ga0211731_11207089Not Available601Open in IMG/M
3300020205|Ga0211731_11591881Not Available1870Open in IMG/M
3300020513|Ga0208090_1037850Not Available641Open in IMG/M
3300020524|Ga0208858_1019471Not Available1049Open in IMG/M
3300020532|Ga0208601_1035213Not Available724Open in IMG/M
3300021376|Ga0194130_10002387All Organisms → Viruses27319Open in IMG/M
3300022190|Ga0181354_1067639Not Available1186Open in IMG/M
3300027114|Ga0208009_1001072All Organisms → cellular organisms → Bacteria7860Open in IMG/M
3300027114|Ga0208009_1006847Not Available2952Open in IMG/M
3300027144|Ga0255102_1019710Not Available1200Open in IMG/M
3300027499|Ga0208788_1010690Not Available3343Open in IMG/M
3300027499|Ga0208788_1139809Not Available538Open in IMG/M
3300027518|Ga0208787_1045768Not Available1250Open in IMG/M
3300027581|Ga0209651_1073981Not Available984Open in IMG/M
3300027586|Ga0208966_1020308Not Available1955Open in IMG/M
3300027586|Ga0208966_1045939Not Available1253Open in IMG/M
3300027608|Ga0208974_1025738Not Available1802Open in IMG/M
3300027608|Ga0208974_1081818Not Available882Open in IMG/M
3300027627|Ga0208942_1109628Not Available777Open in IMG/M
3300027642|Ga0209135_1096016Not Available999Open in IMG/M
3300027644|Ga0209356_1085841Not Available931Open in IMG/M
3300027656|Ga0209357_1048322Not Available1344Open in IMG/M
3300027659|Ga0208975_1033181Not Available1640Open in IMG/M
(restricted) 3300027730|Ga0247833_1019889Not Available5040Open in IMG/M
3300027744|Ga0209355_1267132Not Available664Open in IMG/M
3300027744|Ga0209355_1290151Not Available625Open in IMG/M
3300027759|Ga0209296_1167916Not Available969Open in IMG/M
3300027770|Ga0209086_10002636Not Available13920Open in IMG/M
(restricted) 3300028569|Ga0247843_1103407Not Available1288Open in IMG/M
3300031857|Ga0315909_10001950Not Available27068Open in IMG/M
3300033994|Ga0334996_0228555Not Available972Open in IMG/M
3300034095|Ga0335022_0604371Not Available554Open in IMG/M
3300034101|Ga0335027_0377701Not Available927Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake30.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater16.36%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic13.64%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater13.64%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface9.09%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.55%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater3.64%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.73%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake2.73%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton0.91%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.91%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.91%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.91%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003388Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SNEnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003404Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMDEnvironmentalOpen in IMG/M
3300003429Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003986Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (v2)EnvironmentalOpen in IMG/M
3300004096Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)EnvironmentalOpen in IMG/M
3300004125Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)EnvironmentalOpen in IMG/M
3300004763Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004789Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004794Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300007162Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11EnvironmentalOpen in IMG/M
3300008117Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013129 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cmEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013137 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1mEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020196Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0mEnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020513Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020524Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020532Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021376Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surfaceEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300027114Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)EnvironmentalOpen in IMG/M
3300027144Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0hEnvironmentalOpen in IMG/M
3300027499Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)EnvironmentalOpen in IMG/M
3300027518Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes)EnvironmentalOpen in IMG/M
3300027581Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027586Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027627Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027642Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027644Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027656Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028569 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8mEnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300034095Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B570J40625_10011138753300002835FreshwaterMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKDIFKK*
JGI25908J49247_1000712923300003277Freshwater LakeMAFLTWHLIAIITVMAASFLIGYSTGKKDEKVNYKFVDKLKNIFRK*
JGI25908J49247_1001800223300003277Freshwater LakeMAFLAWHIIAILTVMAVSFLIGYSLSKKEDRINYNYIDRLKNLFKR*
JGI25910J50241_1000023953300003388Freshwater LakeMXFLTWHLIAIITVMAASFLIGYSTGKKDEKVNYKFVDKLKNIFRK*
JGI25910J50241_1004901123300003388Freshwater LakeMAFLAWHIIAILTVMAVSFLIGYSLSKKEDRINYNYIDRLKNLFKRIIYYDNCI*
JGI25910J50241_1013512623300003388Freshwater LakeMAFLTWHILAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLKDIFKK*
JGI25910J50241_1014642413300003388Freshwater LakeNKWFSSNNNNRRRNILMVFLTWHLIAIITVMAASFLIGYSIGKKDEKVNYKFVDKLKNIFKK*
JGI25909J50240_111356623300003393Freshwater LakeKWFSSNNNNRRRNILMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKDIFKK*
JGI25907J50239_101738813300003394Freshwater LakeMAFLTWHLIAIITVMAASFLIGYSTGKKDEKVNYKFVDKLKNIFRK
JGI25920J50251_1002342523300003404Freshwater LakeMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRKNYNYIDRLKDIFKK*
JGI25914J50564_1015259113300003429Freshwater LakeMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKNIFKK*
Ga0063233_1028028513300003986Freshwater LakeIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNILKK*
Ga0066177_1000318713300004096Freshwater LakeFLTWHLIAIITVMAASFLIGYSTGKKDEKVNYKFVDKLKNIFRK*
Ga0066182_1008369723300004125Freshwater LakeMAFLTWHLIAIITVMAASFLIGYSTGKKDEKVNYKFVDKL
Ga0007746_138713023300004763Freshwater LakeIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKNIFKK*
Ga0007752_1116692823300004789Freshwater LakeMAFLTWHILAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLKNIFKK*
Ga0007751_1140627813300004794Freshwater LakeHIIAILTVMAVSFLIGYSLSKKEDRINYNYIDRLKNLFKR*
Ga0070374_1024058233300005517Freshwater LakeMVFLTWHLIAIITVMAVSFLIGYSIGKKDEKVNYKFVDKLKNIFKK*
Ga0070374_1053208723300005517Freshwater LakeMAFLTWHILAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLKDIF
Ga0049083_1000366873300005580Freshwater LenticMVFLTWHLIAIITVMAASFLIGYSIGKKDEKVNYKFVDKLKNIFKK*
Ga0049081_1000211523300005581Freshwater LenticMIFLTWHLIAILTVMAASFLIGYSVGKKQDRRNYNYIDRLKNLFK*
Ga0049081_1001870953300005581Freshwater LenticFLAWHILAILTVMAGSFLIGYSIGKKDERVNYKFADKLKNIFKK*
Ga0049081_1011566743300005581Freshwater LenticILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKNIFKK*
Ga0049081_1018276633300005581Freshwater LenticAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKDIFKK*
Ga0049081_1030189823300005581Freshwater LenticMAFLAWHIIAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLKNIFKK*
Ga0049080_1003973023300005582Freshwater LenticMAFLAWHIIAILTVMAVSFLIGYSLSKKEDRRNYNYIDRLKNIFKK*
Ga0049080_1011211423300005582Freshwater LenticMAFLAWHIIAILTVMAGSFLIGYSIGKKDERVNYKFADKLKNIFKK*
Ga0049080_1027474513300005582Freshwater LenticMAFLAWHILAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLKNIFKK*
Ga0079957_103950643300005805LakeMAFLAWHLIAILTVMAGSFLIGYSVGKKEDRRNYNYIDKLKNLFKR*
Ga0079957_108794553300005805LakeILMAFLAWHIIAILTVMAGSFIIGYSIGKKDERINYKFTDKIKNILRK*
Ga0079957_115160543300005805LakeILMAFLAWHIIAILTVMAGSFIIGYSIGKKDERVNYKFADKLKNIFKK*
Ga0079301_100214763300006639Deep SubsurfaceMVFLTWHLIAILTVMAVSFLIGYSVGKKEDRRNYNYIDRLKNLFKK*
Ga0079301_100697433300006639Deep SubsurfaceMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNIFKK*
Ga0079301_101636533300006639Deep SubsurfaceMAFLAWHIIAILTVMAGSFIIGYSIGKKDEKLNYRFADKLKNIFKK*
Ga0079301_121688413300006639Deep SubsurfaceMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDR
Ga0079300_1004909633300007162Deep SubsurfaceMAFLAWHILAILTVMAGSFLIGYSIGKKDEKLNYRFADKLKNIFKK*
Ga0114351_115638933300008117Freshwater, PlanktonMAFLAWHIIAILTVMAGSFIIGYSIGKKDEKVNYKFADKLKNIFKK*
Ga0114974_1002242523300009183Freshwater LakeMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNIFRK*
Ga0133913_1006763453300010885Freshwater LakeMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNILKK*
Ga0133913_1008682693300010885Freshwater LakeLMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNIFRK*
Ga0164293_1033224923300013004FreshwaterMTFLTWHLIAILTVMAASFLIGYSIGKKDEKVNYKFVDKLKNIFKK*
Ga0164292_1027956433300013005FreshwaterMAFLAWHIIAILTVMAASFLIGYSVGKKQDRVNYNYIDRLKDIFKK*
(restricted) Ga0172367_1003114753300013126FreshwaterMAFLTWHIIAILTVMAGSFIIVYSIDKKDEKLNYRFADKLKNIFKK*
(restricted) Ga0172367_1011944413300013126FreshwaterNNRRRNILMAFLAWHIIAILTVMAGSFIIGYSIGKKDERLNYKFTDKLKNILRK*
(restricted) Ga0172367_1040425223300013126FreshwaterMAFLTWHIIAILTVMAGSFIIGYSIGKKDEKVNYKFTDKLKNILR
(restricted) Ga0172364_1081079423300013129SedimentNNNRRRNILMAFLTWHIIAILTVMAGSFIIGYSIGKKDEKVNYKFTDKLKNILRK*
(restricted) Ga0172373_1014958013300013131FreshwaterMAFLAWHIIAILTVMAGSFIIGYSIGKKDERLNYKFTDKLKNILRK*
(restricted) Ga0172373_1064322813300013131FreshwaterRNILMAFLAWHIIAILTVMAGSFIIGYSIGKKDERLNYKFTDKLKNILRK*
(restricted) Ga0172373_1093255123300013131FreshwaterMAFLAWHIIAILTVMAGSFIIGYSIGKKDEKLNYKFTDKLKNILRK*
(restricted) Ga0172375_1043292723300013137FreshwaterMAFLTWHIIAILTVMAGSFIIGYSIGKKDERLNYKFTDKLKNILRK*
Ga0181365_116875923300017736Freshwater LakeSNHYNRWRNILMAFLAWHIIAILTVMAVSFLIGYSLSKKEDRINYNYIDRLKNLFKR
Ga0181349_128473423300017778Freshwater LakeLAWHIIAILTVMAGSFLIGYSLGKKEDRKNYNYIDRLKDIFKK
Ga0181349_128554713300017778Freshwater LakeKLFSNSWFSSNHYNRWRNILMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNILKK
Ga0181348_107186523300017784Freshwater LakeMAFLTWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKNIFKK
Ga0181348_108213123300017784Freshwater LakeMVFLTWHLIAIITVMAASFLIGYSTGKKDEKVNYKFVDKLKNIFRK
Ga0181348_123140723300017784Freshwater LakeAWHIIAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLKDIFKK
Ga0181355_138234523300017785Freshwater LakeMVFLTWHLIAIITVMAASFLIGYSTGKKDEKVNYKFVDKLKNIFKK
Ga0181359_101377753300019784Freshwater LakeMAFLTWHILAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLKDIFKK
Ga0194113_1000861623300020074Freshwater LakeMAFLTWHLIAILTVMAGSFLIGYSIGKKDEKSNYKFTDKIKNIFRK
Ga0211732_116241523300020141FreshwaterMAFLAWHIIAILTVMAVSFLIGYSIGKKDEKVNYKFIDKVKNILKK
Ga0211736_1006951123300020151FreshwaterMIFLTWHLIAILTVMAASFLIGYSVGKKQDRRNYNYIDRLKNLFK
Ga0211736_1009988823300020151FreshwaterMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFIDKVKNILKK
Ga0211736_1075248323300020151FreshwaterNRRRNILMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNIFKK
Ga0211736_1082015933300020151FreshwaterMAFLAWHILAILTVMAGSFIIGYSIGKKDERLNYKFTDKLKNILRK
Ga0211734_1086392913300020159FreshwaterLTVMAGSFLIGYSLGKKEDRRNYDYINRLKNIFKK
Ga0211733_1036038953300020160FreshwaterMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFTDKLKNILRK
Ga0211733_1048681223300020160FreshwaterMVFLTWHLIAIITVMAASFLIGYSIGKKDEKVNYKFVDKLKNIFKK
Ga0211733_1050266113300020160FreshwaterNRRRNILMAFLAWHIIAILTVMAVSFLIGYSLSKKEDRINYNYIDRLKNLFKR
Ga0211733_1077114113300020160FreshwaterAWHIIAILTVMAGSFLIGYSLGKKEDRRNYDYINRLKNIFKK
Ga0211726_1007272523300020161FreshwaterMAFLAWHILAILTVMAGSFLIGYSIGKKDERVNYKFIDRFKNILRK
Ga0211735_1086099223300020162FreshwaterMAFLTWHIIAILTVMAGSFIIGYSIGKKDERLNYKFTDKLKNILRK
Ga0211729_1067318723300020172FreshwaterMTFLAWHILAILTVMAGSFLIGYSIGKKDERVNYKFIDRFKNILRK
Ga0211729_1116959123300020172FreshwaterMVFLAWHLIAILTVMIASFLIGYSVGKKQDRRNYNYIDRLKNLFK
Ga0194124_1033660523300020196Freshwater LakeMAFLAWHIIAILTVMAGSFIIGYSIGKKDERLNYKFTDKLKNFLRK
Ga0211731_1037050113300020205FreshwaterNRRRNILMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFTDKLKNILRK
Ga0211731_1107265213300020205FreshwaterMAFLTWHIIAILTVMAVSFLIGYSLSKKEDRINYNYIDRLKNLFKR
Ga0211731_1120708913300020205FreshwaterWFSSYNNNRRRNILMAFLAWHIIAILTVMAVSFLIGYSMSKKEDRRNYNYIDRLKNIFKK
Ga0211731_1159188113300020205FreshwaterRRRNILMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFIDKVKNILKK
Ga0208090_103785013300020513FreshwaterFSSNNNNRRRNILMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKDIFKK
Ga0208858_101947123300020524FreshwaterMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDKLKDIFKK
Ga0208601_103521313300020532FreshwaterMAFLAWHIIAILTVMAASFLIGYSVGKKQDRVNYNYIDRLKDIFKK
Ga0194130_1000238773300021376Freshwater LakeMAFLAWHIIAILTVMAGSFIIGYSIGKKDERLNYKFTDKLKNILRK
Ga0181354_106763923300022190Freshwater LakeMAFLAWHIIAILTVMAVSFLIGYSLSKKEDRINYNYIDRLKNLFKR
Ga0208009_100107253300027114Deep SubsurfaceMVFLTWHLIAILTVMAVSFLIGYSVGKKEDRRNYNYIDRLKNLFKK
Ga0208009_100684733300027114Deep SubsurfaceMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNIFKK
Ga0255102_101971023300027144FreshwaterMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKNIFKK
Ga0208788_101069053300027499Deep SubsurfaceMAFLAWHIIAILTVMAGSFIIGYSIGKKDEKLNYRFADKLKNIFKK
Ga0208788_113980913300027499Deep SubsurfaceMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNY
Ga0208787_104576833300027518Deep SubsurfaceMAFLAWHILAILTVMAGSFLIGYSIGKKDEKLNYRFADKLKNIFKK
Ga0209651_107398123300027581Freshwater LakeMAFLTWHILAILTVMAVSFLIGYSLGKKEDRRNYN
Ga0208966_102030853300027586Freshwater LenticTWHILAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLKNIFKK
Ga0208966_104593943300027586Freshwater LenticMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKDIFKK
Ga0208974_102573823300027608Freshwater LenticMAFLAWHIIAILTVMAVSFLIGYSLSKKEDRRNYNYIDRLKNIFKK
Ga0208974_108181833300027608Freshwater LenticIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLKDIFKK
Ga0208942_110962813300027627Freshwater LenticMAFLTWHLIAIITVMAASFLIGYSTGKKDEKVNYKFVDKLKNIFKK
Ga0209135_109601613300027642Freshwater LakeMAFLTWHILAILTVMAVSFLIGYSLGKKEDRRNYNYIDRLK
Ga0209356_108584113300027644Freshwater LakeITVMAASFLIGYSTGKKDEKVNYKFVDKLKNIFRK
Ga0209357_104832223300027656Freshwater LakeMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRRNYNYIDRLK
Ga0208975_103318153300027659Freshwater LenticILAILTVMAGSFLIGYSIGKKDERVNYKFADKLKNIFKK
(restricted) Ga0247833_101988923300027730FreshwaterMAFLAWHILAILSVMAGSFIIGYSIGKKDEKLNYRFADKLKNIFKK
Ga0209355_126713233300027744Freshwater LakeVFLTWHLIAIITVMAASFLIGYSIGKKDEKVNYKFVDKLKNIFKK
Ga0209355_129015123300027744Freshwater LakeMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNILKK
Ga0209296_116791633300027759Freshwater LakeMAFLAWHIIAILTVMAGSFLIGYSIGKKDEKVNYKFADKLKNIFRK
Ga0209086_1000263683300027770Freshwater LakeMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRKNYNYIDRLKDIFKK
(restricted) Ga0247843_110340713300028569FreshwaterMAFLAWHILAILTVMAGSFIIGYSIGKKDERLNYKFTDKIKNILRK
(restricted) Ga0247843_113365723300028569FreshwaterMAFLAWHILAILTVMAGSFIIGYSIGKKDERVNYKF
Ga0315909_1000195073300031857FreshwaterMAFLAWHIIAILTVMAGSFIIGYSIGKKDEKVNYKFADKLKNIFKK
Ga0334996_0228555_669_8093300033994FreshwaterMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRVNYNYIDRLKNIFKK
Ga0335022_0604371_386_5263300034095FreshwaterMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRINYNYIDRLKNIFKK
Ga0335027_0377701_2_1303300034101FreshwaterMAFLAWHIIAILTVMAGSFLIGYSLGKKEDRVNYNYIDRLKNI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.