Metagenome / Metatranscriptome Family F087151

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087151
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	69 residues
Representative Sequence	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTEASEQLDTFYDPIIGLLEGKIKRTIQ
Number of Associated Samples	76
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.09 %
% of genes near scaffold ends (potentially truncated)	30.91 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (64.545 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (22.727 % of family members)
Environment Ontology (ENVO)	Unclassified (45.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.182 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.22% β-sheet: 0.00% Coil/Unstructured: 38.78%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF09361	Phasin_2	30.00
PF13545	HTH_Crp_2	5.45
PF04392	ABC_sub_bind	4.55
PF01047	MarR	2.73
PF09939	DUF2171	1.82
PF13458	Peripla_BP_6	1.82
PF00581	Rhodanese	1.82
PF03466	LysR_substrate	1.82
PF00027	cNMP_binding	0.91
PF13505	OMP_b-brl	0.91
PF00106	adh_short	0.91
PF13586	DDE_Tnp_1_2	0.91
PF07045	DUF1330	0.91
PF00665	rve	0.91
PF03734	YkuD	0.91
PF13924	Lipocalin_5	0.91
PF13411	MerR_1	0.91
PF04955	HupE_UreJ	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.55
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.91
COG2370	Hydrogenase/urease accessory protein HupE	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.91
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.91
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.91
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.91
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
All Organisms	root	All Organisms	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
cellular organisms	root	All Organisms → cellular organisms	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.00 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.18 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.45 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.45 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.91 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.55 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.91 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.91 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.82 %
Roseomonas harenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	0.91 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	0.91 %
Bradyrhizobium sp. AUGA SZCCT0283	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	0.91 %
Roseomonas harenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	0.91 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_339946_length_1613_cov_9.063856	Not Available	1645	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14333729	Not Available	1438	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101589947	Not Available	964	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104496871	Not Available	568	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1057962	Not Available	568	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1000495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5876	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10057002	Not Available	1006	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1068428	Not Available	559	Open in IMG/M
3300004479\|Ga0062595_102097873	Not Available	550	Open in IMG/M
3300004633\|Ga0066395_10574337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	658	Open in IMG/M
3300005169\|Ga0066810_10027052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1000	Open in IMG/M
3300005332\|Ga0066388_100213218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2557	Open in IMG/M
3300005332\|Ga0066388_100635769	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300005332\|Ga0066388_100708625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1612	Open in IMG/M
3300005332\|Ga0066388_100857719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1492	Open in IMG/M
3300005332\|Ga0066388_101714901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1112	Open in IMG/M
3300005332\|Ga0066388_101715719	Not Available	1112	Open in IMG/M
3300005332\|Ga0066388_102639983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300005332\|Ga0066388_102985044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	864	Open in IMG/M
3300005332\|Ga0066388_103080305	All Organisms → cellular organisms → Bacteria → Proteobacteria	852	Open in IMG/M
3300005332\|Ga0066388_107681484	Not Available	540	Open in IMG/M
3300005332\|Ga0066388_108597034	Not Available	508	Open in IMG/M
3300005713\|Ga0066905_100337848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1198	Open in IMG/M
3300005713\|Ga0066905_101197955	Not Available	679	Open in IMG/M
3300005764\|Ga0066903_100124229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3601	Open in IMG/M
3300005764\|Ga0066903_101213738	Not Available	1401	Open in IMG/M
3300005764\|Ga0066903_101253345	Not Available	1381	Open in IMG/M
3300005764\|Ga0066903_102935783	Not Available	924	Open in IMG/M
3300005764\|Ga0066903_107671925	Not Available	556	Open in IMG/M
3300006605\|Ga0074057_12006107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1249	Open in IMG/M
3300006854\|Ga0075425_100263941	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300009553\|Ga0105249_10425700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1362	Open in IMG/M
3300010043\|Ga0126380_10302227	Not Available	1139	Open in IMG/M
3300010043\|Ga0126380_10561099	Not Available	890	Open in IMG/M
3300010043\|Ga0126380_10570936	Not Available	884	Open in IMG/M
3300010043\|Ga0126380_11085639	Not Available	681	Open in IMG/M
3300010046\|Ga0126384_11682618	Not Available	599	Open in IMG/M
3300010047\|Ga0126382_10279528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1241	Open in IMG/M
3300010047\|Ga0126382_10837826	Not Available	788	Open in IMG/M
3300010358\|Ga0126370_12210863	Not Available	542	Open in IMG/M
3300010359\|Ga0126376_10041357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3205	Open in IMG/M
3300010359\|Ga0126376_10713457	Not Available	967	Open in IMG/M
3300010359\|Ga0126376_11714995	Not Available	664	Open in IMG/M
3300010360\|Ga0126372_10872117	Not Available	900	Open in IMG/M
3300010362\|Ga0126377_11017430	Not Available	895	Open in IMG/M
3300010362\|Ga0126377_12096106	Not Available	642	Open in IMG/M
3300010362\|Ga0126377_12133631	Not Available	636	Open in IMG/M
3300010376\|Ga0126381_103299100	Not Available	637	Open in IMG/M
3300010398\|Ga0126383_10350406	Not Available	1497	Open in IMG/M
3300010868\|Ga0124844_1204666	Not Available	721	Open in IMG/M
3300012899\|Ga0157299_10118350	Not Available	709	Open in IMG/M
3300012901\|Ga0157288_10168475	Not Available	671	Open in IMG/M
3300012948\|Ga0126375_10198013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1316	Open in IMG/M
3300012948\|Ga0126375_10347401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1051	Open in IMG/M
3300012955\|Ga0164298_10907999	Not Available	641	Open in IMG/M
3300012957\|Ga0164303_10384759	Not Available	861	Open in IMG/M
3300012960\|Ga0164301_11183795	Not Available	613	Open in IMG/M
3300012971\|Ga0126369_10052654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3486	Open in IMG/M
3300012971\|Ga0126369_10123260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2391	Open in IMG/M
3300012971\|Ga0126369_12440940	Not Available	608	Open in IMG/M
3300012971\|Ga0126369_13120961	Not Available	542	Open in IMG/M
3300012987\|Ga0164307_10225350	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300012988\|Ga0164306_11419966	Not Available	591	Open in IMG/M
3300013296\|Ga0157374_10245450	Not Available	1761	Open in IMG/M
3300015371\|Ga0132258_10561392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2862	Open in IMG/M
3300015371\|Ga0132258_11113141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1996	Open in IMG/M
3300015371\|Ga0132258_11807432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1540	Open in IMG/M
3300015374\|Ga0132255_101524175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1012	Open in IMG/M
3300015374\|Ga0132255_101698413	Not Available	958	Open in IMG/M
3300016387\|Ga0182040_10506629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	965	Open in IMG/M
3300017993\|Ga0187823_10311076	Not Available	550	Open in IMG/M
3300018000\|Ga0184604_10041651	Not Available	1227	Open in IMG/M
3300018028\|Ga0184608_10021512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2346	Open in IMG/M
3300018051\|Ga0184620_10328570	Not Available	518	Open in IMG/M
3300018066\|Ga0184617_1045696	Not Available	1096	Open in IMG/M
3300018067\|Ga0184611_1106262	Not Available	977	Open in IMG/M
3300019361\|Ga0173482_10574570	Not Available	561	Open in IMG/M
3300019869\|Ga0193705_1042574	Not Available	954	Open in IMG/M
3300021078\|Ga0210381_10216451	Not Available	672	Open in IMG/M
3300021344\|Ga0193719_10056279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	1705	Open in IMG/M
3300021560\|Ga0126371_10236856	Not Available	1935	Open in IMG/M
3300021560\|Ga0126371_10861875	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	1051	Open in IMG/M
3300021951\|Ga0222624_1378651	Not Available	822	Open in IMG/M
3300022195\|Ga0222625_1095457	Not Available	526	Open in IMG/M
3300022534\|Ga0224452_1184979	Not Available	641	Open in IMG/M
3300022694\|Ga0222623_10202553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	770	Open in IMG/M
3300025926\|Ga0207659_11544652	Not Available	567	Open in IMG/M
3300027401\|Ga0208637_1000372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	2478	Open in IMG/M
3300028711\|Ga0307293_10185756	Not Available	662	Open in IMG/M
3300028768\|Ga0307280_10072886	Not Available	1108	Open in IMG/M
3300028787\|Ga0307323_10193464	Not Available	734	Open in IMG/M
3300028814\|Ga0307302_10352531	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300030829\|Ga0308203_1020139	Not Available	860	Open in IMG/M
3300030902\|Ga0308202_1012013	Not Available	1231	Open in IMG/M
3300030903\|Ga0308206_1080818	Not Available	700	Open in IMG/M
3300031058\|Ga0308189_10175422	Not Available	757	Open in IMG/M
3300031058\|Ga0308189_10195561	Not Available	729	Open in IMG/M
3300031226\|Ga0307497_10594847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	559	Open in IMG/M
3300031231\|Ga0170824_123699067	Not Available	607	Open in IMG/M
3300031231\|Ga0170824_128957830	Not Available	636	Open in IMG/M
3300031858\|Ga0310892_10174899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1269	Open in IMG/M
3300031879\|Ga0306919_10238801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1364	Open in IMG/M
3300031910\|Ga0306923_10679763	Not Available	1148	Open in IMG/M
3300031912\|Ga0306921_10223876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2205	Open in IMG/M
3300031940\|Ga0310901_10340540	Not Available	640	Open in IMG/M
3300031943\|Ga0310885_10431838	Not Available	707	Open in IMG/M
3300031954\|Ga0306926_10584623	Not Available	1365	Open in IMG/M
3300032180\|Ga0307471_100414596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1478	Open in IMG/M
3300032261\|Ga0306920_101216883	Not Available	1087	Open in IMG/M
3300033289\|Ga0310914_11696947	Not Available	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.82%
Host-Associated	Host-Associated	8.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.82%
Aquatic	Environmental → Aquatic	10.00%
Plants	Host-Associated → Plants	8.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.82%
Sediment	Environmental → Aquatic → Sediment	6.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Freshwater	Environmental → Aquatic → Freshwater	3.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.64%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01622630	2140918013	Soil	MTRAEEYRHLADRVRARALEEESLAVRAGWENLAESYIKLAEQTEGSDDLDADNDPILGLLGGSRH
ICChiseqgaiiFebDRAFT_143337293	3300000363	Soil	MTRAEEYRHLADRVRARALEEESLAVRAGWENLAESYIKLAEQTEGSDDLDAVNDPILGLLGGSRH*
INPhiseqgaiiFebDRAFT_1015899472	3300000364	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRVEWENLAASYVCLAEQTEASDQLDLVYDPIVGNLQVNIKRIQ*
INPhiseqgaiiFebDRAFT_1044968712	3300000364	Soil	MTRAEEYRHLAENVRSRAFREESSILKAEWENLAESYIRLAEQTEINEPLDPIHDPILGILSGKRH*
AP72_2010_repI_A01DRAFT_10579622	3300000579	Forest Soil	MTRTEEYRHLAKKVRALAAREESPILSAKWETLAESYVRLAEQAEASEQLDTLV*PIRGFLTGVKNQSDNPITEAV
AF_2010_repII_A01DRAFT_10004959	3300000580	Forest Soil	MTRAEEYRHLANKVRARADREESPILRAEWEILAEGYVRLAEQAEASEQLDTLYDPIIGILEVKSNEQSNNGGDHGTIDIRATKR*
AF_2010_repII_A1DRAFT_100570022	3300000597	Forest Soil	MTRAEEYRHLAEKVRARVAREESPVLRAEWENLAEGYVRLAEQTEASEQLDIFYDPIVGILEGKIKRTIQ*
AP72_2010_repI_A001DRAFT_10684281	3300000893	Forest Soil	HLAEKVRAQASREESPVLRAEWENLAEGYVRLAGQAEASEQLDILYDPIVGILEGKIKRTIQ*
Ga0062595_1020978732	3300004479	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLVYDPIVGNLQVNIKRIQ*
Ga0066395_105743371	3300004633	Tropical Forest Soil	MTRAEEYRHLAEKVRARAACEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGVLRVKINRTIQ*
Ga0066810_100270522	3300005169	Soil	MTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLEASRH*
Ga0066388_1002132184	3300005332	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTGASEQLDTFYDPIIGLLEGKIKRTIQ*
Ga0066388_1006357693	3300005332	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWENLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKTKRTIQCGDDHGTIDIRATKR*
Ga0066388_1007086252	3300005332	Tropical Forest Soil	MTRAEEYKHLANKVRARADGEESPSLRAEWENLAEGYVRLAEQTEASEQLDTLYDPIIGILEGIKRTIQ*
Ga0066388_1008577191	3300005332	Tropical Forest Soil	MTRAEEYRHLAEKVRAQAAREESPVLRAEWENLAEGYVRLAEETEASEQLDTLYDPIVGLLEGKIKQTIQ*
Ga0066388_1017149012	3300005332	Tropical Forest Soil	MTRAEEYRHLANKVRARADSEESLTLRAEWEILAESYVRLAEQTEASERLDTLYDPIIGVLEGKTKRTIQ*
Ga0066388_1017157192	3300005332	Tropical Forest Soil	MTRAEEYRHLAKSVRVRAAREESPILRAEWENLAEGYVRLAEQTEASEQLDTVYDPIVGILPVKINRTIQ*
Ga0066388_1026399832	3300005332	Tropical Forest Soil	MTRAEEYRHLAEKVRARAAREESPVLRAEWENLAEGYVRLAEQTEASEQLDIFYDPIVGILEGKIKRTIQ*
Ga0066388_1029850442	3300005332	Tropical Forest Soil	MTRAEEYRHLANKVRALAAGEESPILRAEWENLAEGYVCLAEQTDASEQLDTFYDPIIGLLEGKIKRTIQQ*
Ga0066388_1030803052	3300005332	Tropical Forest Soil	MTRAEEYRHLAEKVRARAGREESPVLRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGDLQVNIKRTTQ*
Ga0066388_1076814841	3300005332	Tropical Forest Soil	MTRAEEYRHLANKVRARADSEESPILRAEWEILAEGYVRLAEQTEASEQLDTLYDPIIGILEGRIKRTIQ*
Ga0066388_1085970341	3300005332	Tropical Forest Soil	MTRAEEYRHLAKKVRARAAREESPVIRAEWENLAESYIRLAEQTEASDQPTVYDPIVGTLPARIKRTIQ*
Ga0066905_1003378483	3300005713	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAEGYVRLAEQTGASEQLDTFYDPIIGLLEGKIKRTIQ*
Ga0066905_1011979551	3300005713	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWENLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKTKRTIQ*
Ga0066903_1001242296	3300005764	Tropical Forest Soil	MTRAEEYRHLAEKVRAQASREESPVLRAEWENLAEGYVRLAEQAEASEQLDILYDPIVGILEGKTKRIIQ*
Ga0066903_1012137383	3300005764	Tropical Forest Soil	MTRAEEYWHLAEKVRAQASREESPVLRAEWENLAEGYVCLAEQTDASEQLDAFYDPIVGIFEGKIKRTIQ*
Ga0066903_1012533454	3300005764	Tropical Forest Soil	MTRAEEYKHLANKVRARADGEESPSLRAEWENLAEGYVRLAEQTEASEQLDTLYAPIIGILEGIKRTIQ*
Ga0066903_1029357832	3300005764	Tropical Forest Soil	MTRAEEYRHLAEKVRAQAAREESPVLRAEWENLAEGYVRLAEETEASEQLDTLYDPIVGLLEGKIKRTIQ*
Ga0066903_1076719252	3300005764	Tropical Forest Soil	MTRAEEYRHLAEKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ*
Ga0074057_120061071	3300006605	Soil	MTRAEEYRHLANEVLARAFEEKSPILRAEWETLAESYVRLAEQTDETEQLDLIDDPILGLLGARRH*
Ga0075425_1002639413	3300006854	Populus Rhizosphere	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLVYDPIVGNVQVNIKRIQ*
Ga0105249_104257002	3300009553	Switchgrass Rhizosphere	MTRAEEYRHLANEVRARAFEEESPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH*
Ga0126380_103022271	3300010043	Tropical Forest Soil	MTRAEEYRHLAESVRARASREDSPLLRAEWENLAESYIRLAEQTEENDPLDPIHDPILGILGGKRH*
Ga0126380_105610992	3300010043	Tropical Forest Soil	MTRAEEYRHLAEKVRAQASREESPVLRAEWENLAEGYVRLAEQAEASEQLDTLYDPILGILEGKIKRTIQ*
Ga0126380_105709362	3300010043	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWENLAEGYVRLAEQTEASEHLDTFYDPIIGVVEGKIKRTIQ*
Ga0126380_110856392	3300010043	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTGASEQLDTFYDPIIGLLEGKIKRTIQQ*
Ga0126384_116826182	3300010046	Tropical Forest Soil	MTRAEEYRHLAEKVRARAACEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGLLEGKVKRTIQ*
Ga0126382_102795283	3300010047	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTGASEQLDTFYDPIIGL
Ga0126382_108378261	3300010047	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWESLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKTKRTIQ*
Ga0126370_122108631	3300010358	Tropical Forest Soil	MTRAEEYKHLAEKVRARARREESPVLRAEWENLAEAYVRLAEQTEASEQLDTIDGPIVGPLQVKINRTIQ*
Ga0126376_100413576	3300010359	Tropical Forest Soil	MTRAEEYRHLAEKVRAQASREESPVLRAEWENLAEGYVRLAEQAEASEQLDILYDPIVGLLEGKVKRTIQ*
Ga0126376_107134572	3300010359	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESLILRAEWENLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKTKRTIQ*
Ga0126376_117149952	3300010359	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAAGYVCLAEQTDASEQLDTFYDPIIGLLEGKIKRTIQQ
Ga0126372_108721171	3300010360	Tropical Forest Soil	MTRAEEYKHLANKVRARADSEESLTLRAEWEILAESYVRLAEQTEASEQLDTLYDPIIGILEGIKRTIQ*
Ga0126377_110174302	3300010362	Tropical Forest Soil	MTRAEEYRHLAESVRARAPREDSPLLKAEWENLAESYIRLAEQPEENDPLDPIHDPILGILGGKRH*
Ga0126377_120961062	3300010362	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWENLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKT
Ga0126377_121336311	3300010362	Tropical Forest Soil	MTRAEEYRHLANKVRVRADAEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPIIGILEGIKRTIQ*
Ga0126381_1032991001	3300010376	Tropical Forest Soil	EYRHLAEKVRAQASREESPVLRAEWENLAEGYVRLAEQAEASEQLDILYDPIVGILEGKTKRIIQ*
Ga0126383_103504064	3300010398	Tropical Forest Soil	YRHLAEKVRAQAAREESPVLRAEWENLAEGYVRLAEQTEASEQLDIFYDPIVGILEGKIKRTIQ*
Ga0124844_12046662	3300010868	Tropical Forest Soil	MTRAEEYKHLAEKVRARARREESPVLRAEWENLAEAYVRLAEQTEASEQLDTIDGPIVGPL*
Ga0157299_101183501	3300012899	Soil	MTRAEEYRQLANKVRARAFEEESPILRAEWETLADSYVWLAEQTDEIEQLDVDDPILGLLGALGIKGEANRRE
Ga0157288_101684751	3300012901	Soil	MTRAEEYRQLANKVRARAFEEESPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH*
Ga0126375_101980132	3300012948	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTEASEQLDTFYDPIIGLLEGKIKRTIQ*
Ga0126375_103474011	3300012948	Tropical Forest Soil	MTRAEEYRHLAEKVRARAACEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPI
Ga0164298_109079992	3300012955	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTEASDQLDLVYDPIVGNLQVNIKRIQ*
Ga0164303_103847591	3300012957	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQRDLVYDPIVGNLQVNIKRIQ*
Ga0164301_111837951	3300012960	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLVYDPIVGNLQVNIKR
Ga0126369_100526541	3300012971	Tropical Forest Soil	KRSPMTRAEEYRHLAEKVRARAACEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGVLRVKINRTIQ*
Ga0126369_101232601	3300012971	Tropical Forest Soil	MTRAEEYRHLAEKVRAQASREESPVLRAEWENLAEGYVCLAEQTDASEQLDAFYDPIVGI
Ga0126369_124409401	3300012971	Tropical Forest Soil	VRAQAAREESPVLRAEWENLAEGYVRLAEETEASEQLDTLYDPIVGLLEGKVKRTIQ*
Ga0126369_131209611	3300012971	Tropical Forest Soil	HHYIVVSHNRSPMTRAEEYKHLAEKVRARARREESPVLRAEWENLAEAYVRLAEQTEASEQLDTIDGPIVGPLQVKINRTIQ*
Ga0164307_102253502	3300012987	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTEASDQLDLAYDPIVGNLQVNIKRIQ*
Ga0164306_114199661	3300012988	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTEASDQLDLVYDPIVGN
Ga0157374_102454502	3300013296	Miscanthus Rhizosphere	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLIYDPIVGNLQVNIKRIQ*
Ga0132258_105613925	3300015371	Arabidopsis Rhizosphere	DHLVIEVAPMTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLGASRH*
Ga0132258_111131414	3300015371	Arabidopsis Rhizosphere	MTRAEEYRQLANTVRARAFEEESPILRAEWETLADSYVWLAEQTDEAEQLYADDPILGLLGASRH*
Ga0132258_118074322	3300015371	Arabidopsis Rhizosphere	MTRAEEYRHLAKKVRARAAGEESPTVRAGWENLAESYVCLAEQAEASDQLDPLYDPIVGDFQVNIKRTIQ*
Ga0132255_1015241753	3300015374	Arabidopsis Rhizosphere	MTRAEEYRQLANKVRARAFEEESPILRAEWETLADSYVWLAEQTDEAEQLYADDPILGLLGASRH*
Ga0132255_1016984133	3300015374	Arabidopsis Rhizosphere	MTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLGARRH*
Ga0182040_105066291	3300016387	Soil	AEEYRHLAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTVQ
Ga0187823_103110761	3300017993	Freshwater Sediment	MKRAEEYRHLAETVRFRARQEESPNLRAEWEHLAETYDRLAEQTDSNEPLDPASDPVFRILGGSRH
Ga0184604_100416512	3300018000	Groundwater Sediment	MTRAEEYRHLAKKVHARAAREESPILRAEGENLAEGYVRLTEQTVASEQLDTLYDPIVGLQVKINRTIQ
Ga0184608_100215125	3300018028	Groundwater Sediment	MTRAEEYRYLATKIRVRASHEESPIMKAEWENLAKSYIRLAEQSEESDHIDVFYDPIIGILGGSRH
Ga0184620_103285702	3300018051	Groundwater Sediment	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRLAEQTVASEQLDTLYDPIVGLQVKINRTIQ
Ga0184617_10456962	3300018066	Groundwater Sediment	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRRAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0184611_11062621	3300018067	Groundwater Sediment	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAKGYVRLAEQTVASEQLDTLYDPIVGLQVKINRTIQ
Ga0173482_105745702	3300019361	Soil	MTRAEEYRHLANEVRARAFEEESPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH
Ga0193705_10425742	3300019869	Soil	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAKGYVRLAEQTVASEQLDTLYDPIVGLRVKINRTIQ
Ga0210381_102164512	3300021078	Groundwater Sediment	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRLAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0193719_100562791	3300021344	Soil	MTRAEEYRYLATKVRVRASHEESPIMKAEWENLAKSYIRLAEQSEESDHIDVFYDPIIGILGGVAALNSK
Ga0126371_102368564	3300021560	Tropical Forest Soil	VVSHNRSPMTRAEEYKHLAEKVRARARREESPVLRAEWENLAEAYVRLAEQTEASEQLDTIDGPIVGPLQVKINRTIQ
Ga0126371_108618752	3300021560	Tropical Forest Soil	MTRAEEYRHLAEKVRAQAAREESPVLRAEWENLAEGYVRLAEETEASEQLDTLYDPIVGLLEGKIKRTIQ
Ga0222624_13786511	3300021951	Groundwater Sediment	IGHKRSLMTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRRAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0222625_10954572	3300022195	Groundwater Sediment	MTRAEEYRYLATKVRARASDEESPIAKAGWENLASSYIRLAEQSEESDPIDVFYDPIIGILGGSRH
Ga0224452_11849791	3300022534	Groundwater Sediment	KVRARAAREESPILRAEWENLAEGYVRRAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0222623_102025532	3300022694	Groundwater Sediment	MTRAEEYRYLATKVRVRASHEESPIMKAEWENLAKSYIRLAEQSEESDHIDVFYDPIIGILGGSRH
Ga0207659_115446521	3300025926	Miscanthus Rhizosphere	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLVYDPIVGNVQVNIKRIQ
Ga0208637_10003722	3300027401	Soil	MTRAEEYRHLANEVRARAFEEKSPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH
Ga0307293_101857562	3300028711	Soil	AKKVRARAAREESPILRAEWENLAEGYARLAEQTEASEQLDTLYDPIVGLRVKINRTIQ
Ga0307280_100728863	3300028768	Soil	GAHNSAIGHKRSLMTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRLAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0307323_101934641	3300028787	Soil	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRRAEQTVASEQLDTLDDPIVGLRVKINRTIQ
Ga0307302_103525312	3300028814	Soil	MTRAEEYRHLATKVHARASNEESPIVKAEWENLAETYIRLAQQSEENGQIDVLYDPIIGILGGSRH
Ga0308203_10201391	3300030829	Soil	RSQMTRAEEYRHLAKKVRARAAREESPILRAEWENLAKGYVRLAEQTVASEQLDTLYDPIVGLQVKINRTIQ
Ga0308202_10120131	3300030902	Soil	SRGQIMTRAEEYRYLATKVRVRASHEESPIMKAEWENLAKSYIRLAEQSEESDHIDVFYDPIIGILGGSRH
Ga0308206_10808181	3300030903	Soil	ASRGRIMTRAEEYRYLATKVRARASDEESPIAKAGWENLASSYIRLAEQSEESDPIDVFYDPIIGILGGSRH
Ga0308189_101754221	3300031058	Soil	SLMTRADEYRHLQKRSAPELPGKKARLRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGLRVKINRTIQ
Ga0308189_101955611	3300031058	Soil	GHKRSLMTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRRAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0307497_105948471	3300031226	Soil	AEEYRHLANKVRARAFEEESPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH
Ga0170824_1236990671	3300031231	Forest Soil	PMTRAEEYRHLAKTVRARAAREESPILSAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGLRVKINRTIQ
Ga0170824_1289578302	3300031231	Forest Soil	MTRADEYRHLAKRVRTRAAGEESPILRAEWENLAEGYVRLAEQTVASEQLDPSMNPIVGLRVKINRTIQ
Ga0310892_101748992	3300031858	Soil	MTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLEASRH
Ga0306919_102388013	3300031879	Soil	MTRAEEYRHLAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ
Ga0306923_106797631	3300031910	Soil	MTRAEEYRHLAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGI
Ga0306921_102238761	3300031912	Soil	MTRAEEYRHLAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGK
Ga0310901_103405402	3300031940	Soil	HLVIEVAPMTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLGASRH
Ga0310885_104318381	3300031943	Soil	MTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETDQLDLIDDPILGLLEASRH
Ga0306926_105846232	3300031954	Soil	MTRAEEYRHLAGKVRARASREGSPVLRAEWENLAEGCVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ
Ga0307471_1004145962	3300032180	Hardwood Forest Soil	MTRAEEYRQLANTVRARAFEEESPIRRAEWETLAESYVWLAEQTDEAEQLDADDPIAGLLGASRH
Ga0306920_1012168832	3300032261	Soil	MTRAEEYRHFAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ
Ga0310914_116969471	3300033289	Soil	VRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087151

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences