Metagenome / Metatranscriptome Family F087161

Basic Information
Family ID	F087161
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	43 residues
Representative Sequence	MESLTETAELALPGLEKASMTEPSPGHWIERGPQKRLMVFAGRSH
Number of Associated Samples	99
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.91 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (23.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.182 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 10.96% Coil/Unstructured: 89.04%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00132	Hexapep	63.64
PF14602	Hexapep_2	20.00
PF12804	NTP_transf_3	5.45
PF08544	GHMP_kinases_C	4.55
PF00483	NTP_transferase	3.64
PF01551	Peptidase_M23	0.91
PF00563	EAL	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.91
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.91
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.91
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.91

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300013105\|Ga0157369_10175322	Not Available	2257	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.55%
Host-Associated	Host-Associated	15.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.00%
Plants	Host-Associated → Plants	15.45%
Aquatic	Environmental → Aquatic	4.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.73%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.73%
Sediment	Environmental → Aquatic → Sediment	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.18%
Loam	Environmental → Terrestrial → Soil → Loam	14.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Ice	Environmental → Aquatic → Freshwater → Ice	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.27%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.45%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.64%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.91%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300005898	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405	Environmental	Open in IMG/M
3300005902	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300013766	Permafrost microbial communities from Nunavut, Canada - A26_65cm_6M	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00744730	2166559006	Grass Soil	MESPTTIELALPGLEGGVVSEPQPQHYIVRGPEKRLMVFSGRSHPALA
JGI12635J15846_108988651	3300001593	Forest Soil	MSTETTPELTRLPGLEVTPGTMTGPKVGHWLERGPQKRLM
JGI12053J15887_105332152	3300001661	Forest Soil	MESLTAELALPGLEKATVTQPAQGHWIERGPQKRLM
C688J35102_1203943661	3300002568	Soil	MESPTATEVALPGLEARVVTDPSPQHFIERGPLKRLMVFAGRSHPDL
Ga0063454_1017151171	3300004081	Soil	MESLTAELALPGLEKATLTDPAQSNWIERGPSKRLMVFSGRS
Ga0063455_1000748862	3300004153	Soil	MESPTATELALPGLEGGVAMSDPAPQHYIVRGPQKRLMVFSGRSH
Ga0066674_105593602	3300005166	Soil	MTSATTTPTEARLPGLEVPEVTAEPTPGHFIERGPQKRLMVFSG
Ga0066683_109083811	3300005172	Soil	MPTETTPELTRLPGLEVSPSTMTEPKVGHWLERGPQKRLMVF
Ga0066680_104201911	3300005174	Soil	MESLTTPTDLALPGLEGAVVSEPITGHWIERGPQKKLMVFSGRSHP
Ga0066684_109534631	3300005179	Soil	MESLTTPTDIALPGLEGAVLSEASAGHFIERGPQKKLMVFSGRSHPEL
Ga0066684_111149581	3300005179	Soil	MESPTATELALPGLESGVAMSDPSPQHYIVRGPEKRLMVFAGRS
Ga0066675_100273056	3300005187	Soil	MESLTAELALPGLEKATMTQPAEGHWIERGTHKRLMVFAGRSHPDL
Ga0070683_1004639031	3300005329	Corn Rhizosphere	MESLTAEIALPGLEKAVSETVRGNWIERPGGKRLMVFSGRSHP
Ga0070683_1016333971	3300005329	Corn Rhizosphere	MESPTATELALPGLEARVVTDPAPEHYIERGPLKRLMVFA
Ga0066388_1009046211	3300005332	Tropical Forest Soil	MESPTATELPLPGLEARVVTDPSPEHFIERGPLKRLMVFAGRS
Ga0070713_1007664092	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MESLTETAELALPGLEKASMTEPSPGHWIERGPQKRLMVF
Ga0070713_1017984912	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MESLTAELALPGLEKATVTQPAEGHWIERGTHKRLMVFAGRSHPD
Ga0070699_1012548671	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MESLTATELALPGLEGGAVLTETRPGHWIERGPQKRLMVFS
Ga0070679_1019151622	3300005530	Corn Rhizosphere	MESLTAELPLPGLEKGSVSEPQHGHWIERPGGKRLMVFAGRSHPDLA
Ga0070693_1014702501	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MESPTATELALPGLEARTVTDPAPEHFIERGPLKRLMVFAGRSHPDL
Ga0066701_102030891	3300005552	Soil	MESLTTPTDLALPGLEGAVVSEPITGHWIERGPQKKLMVFSGRSHPEL
Ga0066702_100092521	3300005575	Soil	MESPTATELALPGLEGGVAMSDPSPQHYIVRGPEKRLMVFSGRSH
Ga0068857_1011802142	3300005577	Corn Rhizosphere	MESPTATELALPGLEEARVVTDPSPQHYIERGPLKRLMVFAGRSHP
Ga0068866_107097081	3300005718	Miscanthus Rhizosphere	MESPTATELALPGLEEARVVMDPAPEHFIERGPLKRLMVFA
Ga0075290_10694441	3300005889	Rice Paddy Soil	MESVTELALPGLEKSTMAEPLKENWIERGPSKRLMV
Ga0075276_100936831	3300005898	Rice Paddy Soil	MESPTATELALPGLEARVVTNPSPQHFIERGPLKRLMVFAGR
Ga0075273_100367501	3300005902	Rice Paddy Soil	MESPTATELALPGLEARVVTDPSPEHFIERGPLKRLMVFAGRSH
Ga0075273_100679452	3300005902	Rice Paddy Soil	MESPTATTELALPGLEGKVAMSEPSPQHYIVRGPEKRLMVFAGRSHPALAA
Ga0066656_107218851	3300006034	Soil	MESPTATELALPGLEGGVAMSDPAPQHSIVRGPQKRLMVFSGRSHPEL
Ga0066652_1001457931	3300006046	Soil	MESVTTAELALPGLEKGTLTEPSQGHWIERGPQKRLMVF
Ga0075024_1002476672	3300006047	Watersheds	MESLTAELALPGLEGAAVTQPVQGHWLERGPSKRLMVFAGRSHP
Ga0075015_1006603411	3300006102	Watersheds	MESPTATELALPGFEGSVVTEPQAQHYIVRGPEKRLMVFSGRSHPALAQAI
Ga0074059_119701282	3300006578	Soil	MESPTATELALPGLEGGTVMSDPSPQHYIVRGPEKRLMVFSGRSHPELAAA
Ga0066653_102119481	3300006791	Soil	MESVTTAELALPGLEKGTLTEPSQGHWIERGPQKRLMVFSGRSH
Ga0079221_104029112	3300006804	Agricultural Soil	MESLTAELALPGLEPSTVTQPASGHWLERGPQKRLMVF
Ga0079221_105709401	3300006804	Agricultural Soil	MESPTATELALPGLEGGVAMSDPSPQHYIVRGPEKRLMVFAGR
Ga0099827_117325721	3300009090	Vadose Zone Soil	MESLTAIEVALPGLEGAVVSEPKTGHWLERGPQKRLMVFAGRSHP
Ga0105240_121951141	3300009093	Corn Rhizosphere	MESLTGTVELTLPGLEGATMTESSQGHWIERGPQKRLMVFSGR
Ga0111538_118215602	3300009156	Populus Rhizosphere	MESPTATELALPGLEEARVVMDPAPEHFIERGPLKRLMVFAGRS
Ga0105237_112164121	3300009545	Corn Rhizosphere	MESPTATELALPGLEARTVTDPAPEHFIERGPLKRPMVFA
Ga0126380_106093701	3300010043	Tropical Forest Soil	MESPTATELPLPGLEARVVTDPSPEHFIERGPLKRLMVFAGRSHPDLAQN
Ga0126318_108944352	3300010152	Soil	MESPTATELALPGLEAPVVTGPSPQHFIERGPLKRLMVFAGRSH
Ga0134070_102884732	3300010301	Grasslands Soil	MESLTAELPIPGLERATLNEPSPGHFIERGPLKRLMVFAGRSH
Ga0134070_103900262	3300010301	Grasslands Soil	MESPTATELALPGLEGGVAMSDPAPQHSIVRGPQKRLMVFSGRSHPELA
Ga0134067_102132732	3300010321	Grasslands Soil	MPTETTHELTRLPGLEVSPSTMTEPKVGHWLERGPQKRLMVFSG
Ga0134067_102369812	3300010321	Grasslands Soil	MESPTATELALPGLESGVAMSDPSPQHYIVRGPEKRLMVFAGRSHP
Ga0134062_101673412	3300010337	Grasslands Soil	MESVTTAELALPGLEKAAMSEPSQGHWIERGPQKRLMVF
Ga0134128_110362372	3300010373	Terrestrial Soil	MESLTAEIALPGLEKGAMTEPQQGHWLERPTGKRLMVFSGRSHP
Ga0134126_126179811	3300010396	Terrestrial Soil	MESPTATELALPGLEGGVAMSDPTPQHSLVRGPQKRLMVFSG
Ga0137392_105157582	3300011269	Vadose Zone Soil	MESLTAELTLPGLEGVTMTEPKQGHWIERGPQKRLMVFSGRSHPDLAN
Ga0137391_114551222	3300011270	Vadose Zone Soil	MESLTAELALPGLEGTTATQPETGHWIERGPQKRLMVFAGRS
Ga0137378_114292731	3300012210	Vadose Zone Soil	MESPTATELALPGLEGGVVTEPSPRHFIERGPQKRLMVFSG
Ga0150985_1045142821	3300012212	Avena Fatua Rhizosphere	MESLTAELALPGLEKATLTDPAQSNWIERGPSKRLMVFSGRSHPDLAQ
Ga0150984_1139493131	3300012469	Avena Fatua Rhizosphere	MATTELVRLPGLDTPVMPTEPKQGHWIERGPQRRLMVFTGRSHPQLAE
Ga0137394_113551671	3300012922	Vadose Zone Soil	METVAELALPGLEKGTVTEPTPGHWIERGPQKRLMV
Ga0137413_105139991	3300012924	Vadose Zone Soil	MESPTATELALPGLEGGVAMSDPAPQHSIVRGPQKRLMV
Ga0137404_107742641	3300012929	Vadose Zone Soil	MESLTETAELALPGLEKASMTEPSSGHWIERGPQKRLMVFAG
Ga0164303_100010731	3300012957	Soil	MESPTATELALPGLEGESGAVMSEPSPQHYIVRGPQK
Ga0164307_102556671	3300012987	Soil	MESLTETAELALPGLEKASMTEPSAGHWIERGPQKRLMVFAGR
Ga0164307_113288762	3300012987	Soil	MPIESTTTELALPGLAEARVVTDPAPEHFIERGPLKRPMVFAGRSHPDLAQD
Ga0157369_101753221	3300013105	Corn Rhizosphere	MESPTATELALPGLEARVVTDPAPEHYIERGPLKRL
Ga0157369_111743851	3300013105	Corn Rhizosphere	MESLTAELSLPGLEKATVSQPERGHFLERPGGKRLMVFSGRSHPDLA
Ga0120154_10570911	3300013501	Permafrost	MESLTAELTLPGLEKATMTQPGQGHWIERGPQKRLMVFAGRSHP
Ga0120111_11060531	3300013764	Permafrost	MESLTETAELALPGLEKASMTEPSPGHWIERGPQKRLMVFAGRSHP
Ga0120181_11385051	3300013766	Permafrost	MESLTEPAELALPGLEKASMTEPSPGHWIERGPQKRLMVFAGRSH
Ga0182008_105320571	3300014497	Rhizosphere	MESLTAELALPGLEKATVTDPAQSNWIERGPSKRLMVFSGRSHP
Ga0120171_11599511	3300014827	Permafrost	MESLTTPAEIALPGLEGSVVSEPNPEHWIERGPQKRLMVFSGR
Ga0134069_11508442	3300017654	Grasslands Soil	MESPTATELALPGLEARVVTDPSPRQFIDRGPLKWLMVCAGRS
Ga0136617_114780341	3300017789	Polar Desert Sand	VESATAELTLPGLETPAVRNAPVAGHWIERGPQKRLMLFAGRSHP
Ga0187809_101915151	3300017937	Freshwater Sediment	MESPTATELALPGLEAGVAMSDPSPQHYIVRGPEKRLMV
Ga0187778_107179471	3300017961	Tropical Peatland	METPTAIELALPGLEGSLVTADPSPEHFIVRGPQKRLMVFSGRSHPQLAM
Ga0187776_110497281	3300017966	Tropical Peatland	MESLTAELALPGLEGAAVTQPVQGHWLERGPSKRLMVFSGRSHPD
Ga0187780_106760732	3300017973	Tropical Peatland	MESPTAIELALPGLEGSLVSGDPSPEHFIVRGPQKRLMVFSGR
Ga0187777_112906161	3300017974	Tropical Peatland	MESSTATELALPGLEGGVVLSDPSPQHFIERGPLKRL
Ga0066669_114009991	3300018482	Grasslands Soil	MESLTGTAELTLPGLEGATVTEPSQGHWIERGPQKRLMIFS
Ga0206356_109547791	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MESLTATEITLPGLERAVVTEVTHTRWLERAPQKRLMV
Ga0206354_112753882	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MESLTAELPLPGLEKGSVSEPQHGHWIERPGGKRLMVFAGRSHPDLARAISE
Ga0193699_103081312	3300021363	Soil	MESLTAELALPGLEKATVTQPNQGHWIERGPQKRLMVFAGRS
Ga0207653_101736251	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MESPTTVELALPGLEGEGGAVVSEPSPQHYIVRGPQKRL
Ga0207705_100587851	3300025909	Corn Rhizosphere	MESLTAEIALPGLEKGAMTEPQQGHWLERPTGKRLMVFSGRSHPDL
Ga0207654_102429331	3300025911	Corn Rhizosphere	MESPTATELALPGLEGESGAVMSEPSPQHYIVRGP
Ga0207654_110226061	3300025911	Corn Rhizosphere	MESLTGTAELTLPGLEGGAMTEPSQGHWIERGPQKRLMVF
Ga0207695_115387101	3300025913	Corn Rhizosphere	MESLTAELALPGLEGATMTRPAPGHWIERGPQKRLM
Ga0207694_112975732	3300025924	Corn Rhizosphere	MESVTAEIALPGLEKGTMTEPQQGHWLERPGGKRLMVFSGRSHPDLAQ
Ga0207700_119253502	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MESPTATELALPGLEGGVAMSEPSPQHYIVRGPEKRLMVFAGRSHPALA
Ga0207665_116475982	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MESPTATELALPGLEARVVTDPAPEHYIERGPLKRLMVFAGRSHPDLALNI
Ga0207679_113105302	3300025945	Corn Rhizosphere	MESLTETAELALPGLEKASMTEPSPGHWIERGPQKRLMVFAGRSH
Ga0209804_11644411	3300026335	Soil	MESLTETAELALPGLEKASMTESSPGHWIERGPQKRLMVFAGRS
Ga0209058_13043241	3300026536	Soil	MESPTATELALPGLEGGVAMSDPAPQHSIVRGPQKRLMVFSGRS
Ga0209156_104807682	3300026547	Soil	MESPTATELPLPGLEGGVVMSDPSPRHYIVRGPEKR
Ga0209648_108390362	3300026551	Grasslands Soil	MESLTAELTLPGLEGATMTEPKQGHWIERGPQKRLMVFSGR
Ga0208042_10769171	3300027568	Peatlands Soil	MESVTATEIALPGLEKAIMSAPVQGHWIERGPQKRLMVF
Ga0209178_11325191	3300027725	Agricultural Soil	MESPTATELALPGLEARVVTDPSPQHFIERGPLKRLMVFAGRS
Ga0209811_101489951	3300027821	Surface Soil	MESPTTVELALPGLEGEGGAVVSEPSPQHYIVRGPQKRLMVFSGRSHPYL
Ga0247822_112487032	3300028592	Soil	MAELATLPGLDLAMTQQPAGGHYIERPNGKRLMVFSGRSHA
Ga0265336_100410241	3300028666	Rhizosphere	MESLTAELPIPGLERAVVTEPTEVHWVERAPQKRLM
Ga0307296_106747912	3300028819	Soil	MSTTSATTTTELALPGLEASDVTVQPDPRHFIERGPQKRLMVVSGRSHP
Ga0170824_1153396951	3300031231	Forest Soil	MESLTAELALPGLEGSTASQPETGHWIERGPQKRLM
Ga0318555_103777892	3300031640	Soil	MESPTATELALPGLEGGVVSEPQPQHYIVRGPEKRLMVFSGRSHPYL
Ga0318542_103733791	3300031668	Soil	MESPTATELALPGLEGGVVSEPQPQHYIVRGPEKRLMVFSGRSHPYLARAI
Ga0310813_111870761	3300031716	Soil	MESLTAELSLPGLEKATVSQPERGHFLERPGGKRLMVFSGRSHP
Ga0307468_1001297121	3300031740	Hardwood Forest Soil	MESPTATELPLPGLEARVVTDPSPQHFIERGPLKRLMVFA
Ga0318565_103103732	3300031799	Soil	MESPTATELALPGLEARVVTDPSPEHYIERGPLKRLMVFSGRSHP
Ga0308174_107539231	3300031939	Soil	METPTATELALPGLEGGVVTSDPSPQHYIVRGPEKRLMVFSG
Ga0307479_102748224	3300031962	Hardwood Forest Soil	MESLTAELALPGLEKAVVTEPTPGHWIERAPQKRLMVV
Ga0307479_113795502	3300031962	Hardwood Forest Soil	MESLTAELALPGLEKATVTQPSQGHWIERGPQKRLMVFAG
Ga0308176_103039001	3300031996	Soil	MESPTATELALPGLEEARVVKDPAPEHFIERGPLK
Ga0318553_106549772	3300032068	Soil	MQPAIGTTELALPGLDVAEPVTGMKPGHWIERGPSKRLMVFAGRS
Ga0310810_103097744	3300033412	Soil	MESLTAELALPGLEGPTTMTQPMPGHWIERGPQKRLMVFSGR
Ga0370546_061322_3_110	3300034681	Soil	MESLTGTAELTLPGLEGAIVTEPSQGHWIERGPQKR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087161

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign