NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F087302

Metagenome Family F087302

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087302
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 42 residues
Representative Sequence MKDKRTYTNLKEHGEDMSHENESKITNEDRGPLDLTLL
Number of Associated Samples 97
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.27 %
% of genes from short scaffolds (< 2000 bps) 98.18 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (79.091 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(40.000 % of family members)
Environment Ontology (ENVO) Unclassified
(80.909 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.091 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 9.09%    β-sheet: 0.00%    Coil/Unstructured: 90.91%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.18
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF03592Terminase_2 56.36

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 56.36


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A79.09 %
All OrganismsrootAll Organisms20.91 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10071415All Organisms → cellular organisms → Bacteria1248Open in IMG/M
3300000239|SI36aug09_120mDRAFT_1050884Not Available786Open in IMG/M
3300001450|JGI24006J15134_10086821Not Available1155Open in IMG/M
3300001450|JGI24006J15134_10223552Not Available558Open in IMG/M
3300001460|JGI24003J15210_10158400Not Available571Open in IMG/M
3300001853|JGI24524J20080_1017784All Organisms → cellular organisms → Bacteria758Open in IMG/M
3300002231|KVRMV2_101923728Not Available536Open in IMG/M
3300005057|Ga0068511_1047830Not Available696Open in IMG/M
3300005057|Ga0068511_1070899Not Available595Open in IMG/M
3300005404|Ga0066856_10452405Not Available548Open in IMG/M
3300005522|Ga0066861_10207173Not Available672Open in IMG/M
3300005612|Ga0070723_10592863Not Available555Open in IMG/M
3300006026|Ga0075478_10078244Not Available1066Open in IMG/M
3300006332|Ga0068500_1172768Not Available1146Open in IMG/M
3300006737|Ga0098037_1193160Not Available668Open in IMG/M
3300006750|Ga0098058_1145992Not Available626Open in IMG/M
3300006753|Ga0098039_1286313Not Available551Open in IMG/M
3300006754|Ga0098044_1339420Not Available571Open in IMG/M
3300006793|Ga0098055_1387114Not Available518Open in IMG/M
3300006802|Ga0070749_10159842Not Available1306Open in IMG/M
3300006867|Ga0075476_10301549Not Available562Open in IMG/M
3300006920|Ga0070748_1367869Not Available505Open in IMG/M
3300006921|Ga0098060_1095385Not Available845Open in IMG/M
3300006922|Ga0098045_1133171Not Available577Open in IMG/M
3300006923|Ga0098053_1082972Not Available649Open in IMG/M
3300006928|Ga0098041_1097938Not Available947Open in IMG/M
3300006929|Ga0098036_1173611Not Available656Open in IMG/M
3300007543|Ga0102853_1081016Not Available595Open in IMG/M
3300007647|Ga0102855_1081761Not Available868Open in IMG/M
3300007862|Ga0105737_1072919Not Available849Open in IMG/M
3300007963|Ga0110931_1099002Not Available879Open in IMG/M
3300008219|Ga0114905_1225158Not Available597Open in IMG/M
3300008221|Ga0114916_1051259All Organisms → cellular organisms → Bacteria1150Open in IMG/M
3300009436|Ga0115008_10283576Not Available1176Open in IMG/M
3300009481|Ga0114932_10925702Not Available501Open in IMG/M
3300009593|Ga0115011_10199182Not Available1479Open in IMG/M
3300009602|Ga0114900_1057124Not Available1174Open in IMG/M
3300009790|Ga0115012_11764763Not Available541Open in IMG/M
3300009790|Ga0115012_11779872Not Available539Open in IMG/M
3300010148|Ga0098043_1071332Not Available1040Open in IMG/M
3300010151|Ga0098061_1087125Not Available1173Open in IMG/M
3300010155|Ga0098047_10278807Not Available633Open in IMG/M
3300011013|Ga0114934_10196796Not Available935Open in IMG/M
3300011013|Ga0114934_10460934Not Available563Open in IMG/M
3300012919|Ga0160422_10540215Not Available736Open in IMG/M
3300012952|Ga0163180_11627333Not Available544Open in IMG/M
3300012953|Ga0163179_11947313Not Available540Open in IMG/M
3300013010|Ga0129327_10871754Not Available515Open in IMG/M
3300017706|Ga0181377_1019792All Organisms → cellular organisms → Bacteria → Proteobacteria1485Open in IMG/M
3300017708|Ga0181369_1050251All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae934Open in IMG/M
3300017713|Ga0181391_1131378Not Available558Open in IMG/M
3300017713|Ga0181391_1155423Not Available505Open in IMG/M
3300017717|Ga0181404_1151577Not Available559Open in IMG/M
3300017720|Ga0181383_1151465Not Available623Open in IMG/M
3300017720|Ga0181383_1172977Not Available577Open in IMG/M
3300017721|Ga0181373_1040772All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria852Open in IMG/M
3300017721|Ga0181373_1088547Not Available550Open in IMG/M
3300017724|Ga0181388_1140976Not Available573Open in IMG/M
3300017738|Ga0181428_1157289Not Available531Open in IMG/M
3300017743|Ga0181402_1139800Not Available616Open in IMG/M
3300017748|Ga0181393_1172519Not Available532Open in IMG/M
3300017749|Ga0181392_1168421Not Available639Open in IMG/M
3300017753|Ga0181407_1113225Not Available679Open in IMG/M
3300017755|Ga0181411_1095122All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria883Open in IMG/M
3300017758|Ga0181409_1091240All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae912Open in IMG/M
3300017764|Ga0181385_1089985All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae942Open in IMG/M
3300017767|Ga0181406_1119671Not Available794Open in IMG/M
3300017771|Ga0181425_1172718Not Available682Open in IMG/M
3300017776|Ga0181394_1122705All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria819Open in IMG/M
3300017776|Ga0181394_1237257Not Available548Open in IMG/M
3300019751|Ga0194029_1048958Not Available695Open in IMG/M
3300020438|Ga0211576_10457543Not Available648Open in IMG/M
3300020440|Ga0211518_10346631Not Available694Open in IMG/M
3300020454|Ga0211548_10425945Not Available650Open in IMG/M
3300021957|Ga0222717_10259758Not Available1005Open in IMG/M
3300022167|Ga0212020_1057709Not Available657Open in IMG/M
3300022178|Ga0196887_1052970All Organisms → Viruses1028Open in IMG/M
3300022183|Ga0196891_1035060Not Available935Open in IMG/M
3300022183|Ga0196891_1045199Not Available807Open in IMG/M
3300022183|Ga0196891_1094831Not Available526Open in IMG/M
(restricted) 3300024259|Ga0233437_1149631All Organisms → Viruses1065Open in IMG/M
3300025048|Ga0207905_1062126Not Available558Open in IMG/M
3300025071|Ga0207896_1062570Not Available592Open in IMG/M
3300025084|Ga0208298_1063469Not Available704Open in IMG/M
3300025086|Ga0208157_1049603All Organisms → Viruses1133Open in IMG/M
3300025099|Ga0208669_1036912All Organisms → Viruses1166Open in IMG/M
3300025099|Ga0208669_1100931Not Available601Open in IMG/M
3300025102|Ga0208666_1111071Not Available662Open in IMG/M
3300025103|Ga0208013_1072455All Organisms → Viruses900Open in IMG/M
3300025110|Ga0208158_1105560Not Available660Open in IMG/M
3300025120|Ga0209535_1036115All Organisms → Viruses2269Open in IMG/M
3300025120|Ga0209535_1173748Not Available644Open in IMG/M
3300025137|Ga0209336_10152991Not Available608Open in IMG/M
3300025138|Ga0209634_1244017Not Available654Open in IMG/M
3300025141|Ga0209756_1260479Not Available631Open in IMG/M
3300025141|Ga0209756_1288019Not Available585Open in IMG/M
3300025267|Ga0208179_1069932Not Available742Open in IMG/M
3300025632|Ga0209194_1049317All Organisms → Viruses1216Open in IMG/M
3300025803|Ga0208425_1042254All Organisms → Viruses1153Open in IMG/M
3300025816|Ga0209193_1138322Not Available574Open in IMG/M
3300025889|Ga0208644_1167668All Organisms → Viruses988Open in IMG/M
3300026258|Ga0208130_1062308All Organisms → Viruses1116Open in IMG/M
(restricted) 3300027865|Ga0255052_10431615Not Available645Open in IMG/M
3300028197|Ga0257110_1278687Not Available612Open in IMG/M
3300028414|Ga0228627_1129911Not Available555Open in IMG/M
3300031519|Ga0307488_10419958All Organisms → Viruses821Open in IMG/M
3300032006|Ga0310344_10437115All Organisms → Viruses1123Open in IMG/M
3300032274|Ga0316203_1069137All Organisms → Viruses1007Open in IMG/M
3300032277|Ga0316202_10453474Not Available601Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine40.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater16.36%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous10.91%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean3.64%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.73%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface2.73%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.82%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water1.82%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.82%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.82%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.82%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.82%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.91%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.91%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.91%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.91%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.91%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.91%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.91%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.91%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.91%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.91%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.91%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.91%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000239Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 120mEnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001853Marine viral communities from the Subarctic Pacific Ocean - LP-49EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300005057Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2umEnvironmentalOpen in IMG/M
3300005404Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205EnvironmentalOpen in IMG/M
3300005522Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006332Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200mEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300006923Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaGEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007543Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3EnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300007647Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02EnvironmentalOpen in IMG/M
3300007862Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2umEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300008221Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009602Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010148Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300012919Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020440Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)EnvironmentalOpen in IMG/M
3300020454Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300024259 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MGEnvironmentalOpen in IMG/M
3300025048Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025267Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026258Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78 (SPAdes)EnvironmentalOpen in IMG/M
3300027865 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21EnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300028414Seawater microbial communities from Monterey Bay, California, United States - 33DEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300032006Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MGEnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1007141513300000115MarineMKDKRTYTNLKEHGEDMSHENESKITNEARDPLAVTLLT
SI36aug09_120mDRAFT_105088413300000239MarineMKDKRTYTKLKEHGEDMSHENESTITNEDRGPGDLTLLIE
JGI24006J15134_1008682133300001450MarineMKEKRTYTHLKEHGEDMTHENEFKVDLKEDRGQLD*
JGI24006J15134_1022355213300001450MarineMKDKRTYTNLKEHGEDMSHENESKITNEARDPLAVTLLTEQYRAD
JGI24003J15210_1015840023300001460MarineMKDKRTYTKLKEHGEDMTHENESKVDPKEDRGSLDLT
JGI24524J20080_101778413300001853MarineMKEKRTYTHLKEHGEDMTHENEFKVDLKEDRGQLDLT
KVRMV2_10192372823300002231Marine SedimentMKDKRTYNKLKEHGEDMTHENESTITNDDRGTGDLTYLIEM
Ga0068511_104783013300005057Marine WaterMKDKRTYTNLKEHGEDMTHENESKVDPKENRGSLDLTFMLEQHK
Ga0068511_107089913300005057Marine WaterMKDKRTYTHLKEHGEDMTHENESRVNVDPKYKSESNPSDLVF
Ga0066856_1045240523300005404MarineMKDKRTYTNIKEYGEDMSHENEASITSEPKEDRGSGDLTYLIEM
Ga0066861_1020717323300005522MarineMKDKRTYNKLKEHGEDMSHENESRIEPKDDRGPGDLTLLTEQY
Ga0070723_1059286313300005612Marine SedimentMKDKRTYTHLKEHGEDMTHENESKVDPKEDRGSLDLTFM
Ga0075478_1007824413300006026AqueousMKDKRTYTNLKEHGEDMSHENESKITNEARDPLAVTLLTEQYRADL
Ga0068500_117276813300006332MarineMKDKRTYNKLKEHGEDMTHENESKIDPKEDRGPLDITLLTEQYRAD
Ga0098037_119316013300006737MarineMKDKRTYTHLKEHGEDMTHENESKITIDPNYKEDRGPGDLSLLVELHKKE
Ga0098058_114599223300006750MarineMKDKRTYTNLKEHGEDMSHENEATITPEPKEDRGPLDLAFLIDKHKAEIW
Ga0098039_128631323300006753MarineMKDKRTYTKLKEHGEDMSLENEVKITIDPNYKEDRGPNDLSLHIEKLQARIKQLEE
Ga0098044_133942023300006754MarineMKDKRTYTNAKEHGEDMSHENEAKITNEPKEDRGSGDLTYLIE
Ga0098055_138711413300006793MarineMKDKRTYTNKKEHGEDMSYENYTKITNEDRGPGDLT
Ga0070749_1015984253300006802AqueousMKDKRTYTKLKEHGEDMSHENESKITNEDRGPLDLT
Ga0075476_1030154913300006867AqueousMKDKRTYTNLKEHGEDMSHENESKITNEARDPLAVTLLTEQY
Ga0070748_136786923300006920AqueousMKDKRTYTKLKEHGEDMTHENESKITNEDRGPLDLTLL
Ga0098060_109538533300006921MarineMKEKRTYTHLKEHGEDMTHENEFKVDLKEDRGQLDL
Ga0098045_113317113300006922MarineMKDKRTYTKLKEHGEDMSHQNESKITNEVKEDRGPG
Ga0098053_108297213300006923MarineMKDKRTYTNLKEYGEDMSHENEAKITNEDRGPGDLTLIAELHQKEIWE
Ga0098041_109793833300006928MarineMKEKRTYTHLKEHGEDMTHENEFQVNIKEDRGQLDLTRQIDELK
Ga0098036_117361123300006929MarineMKEKRTYTHLKEHGEDMTHENEFKVDLKEDRGQLDLTR
Ga0102853_108101623300007543EstuarineMKDKRTYTKLKEHGEDMSHENESKITNEDRGPLDLTL
Ga0070751_132690623300007640AqueousMKDKRTYTNKKEHGEDMSHENESTITNNDRGPLDLTLLTEQ
Ga0102855_108176123300007647EstuarineMKDKRTYTNLKEHGEDMSHENESKITNEARDPLAVTLLTEQYRADLKK
Ga0105737_107291933300007862Estuary WaterMKDKRTYTKLKEHGEDMTHENESKITNEDRGLLDLTLLT
Ga0110931_109900223300007963MarineMKDKRTYTHLKEHGEDITHENEFKVSAKEDRGPLDLTKQIDGLK
Ga0114905_122515823300008219Deep OceanMKEKRTYTHLKEHGEDMTHENEFKVDLKEDRGQLDLTRQI
Ga0114916_105125933300008221Deep OceanMKDKRTYTNLKEHGEDMSHENESTITNEDRGPLDLTLLTEQYRADLKKYQD
Ga0115008_1028357623300009436MarineMKDKRTYTNLKEHGEDMSHENESKIINEARDPLAVTLLTEQYRADLKKYQ
Ga0114932_1092570223300009481Deep SubsurfaceMKDKRTYTKQKEHGEDMSHENERKHTNDGIKEDRGPLDITLLTEQY
Ga0115011_1019918213300009593MarineMKDKRTYTKLKEHGEDMSHENEAKIKHEAKEDRGPNDLT
Ga0114900_105712413300009602Deep OceanMKDKRTYTNAKEHGEDMSHENEAKIKSAPSKEDRGMGDLT
Ga0115012_1176476323300009790MarineMKDKRTYNNIKEYGEDMSYENDAKITNEPKEDRGPLDL
Ga0115012_1177987213300009790MarineMKDKRTYTNLKEHGEDMSHENEAKIKHEAKEDRGPGDLTLMA
Ga0098043_107133213300010148MarineMKDKRTYTHLKEHGEDMTHENESKITIDSNYKEDRGPG
Ga0098061_108712523300010151MarineMKDKRTYTKLKEHGEDMSHENEAKITNEVKEDRGPGDL
Ga0098047_1027880723300010155MarineMKDKRTYTNLKEYGEDMSHENEAKITNEVKEDRGPGDLTLMAELHQK
Ga0114934_1019679613300011013Deep SubsurfaceMKDKRTYTNAKEHGEDMSLENEVKITNEPKEDRGSLDLAFLI
Ga0114934_1046093413300011013Deep SubsurfaceMKDKRTYNNLKEHGEDMTYESERKHESDDRGELDLSLL
Ga0160422_1054021523300012919SeawaterMKDKRTYTNAKEHGEDMSLENEINIKHEPKEDRGALDLTFLIE
Ga0163180_1162733313300012952SeawaterMKDKRTYNKLKEHGEDMTHENESKVDPKEDRGPLDITLLTEQYKSDLNRYM
Ga0163179_1194731323300012953SeawaterMKDKRTYTNIKEYGEDMSHENERKHTNENRGPGDLTYLIELH
Ga0129327_1087175413300013010Freshwater To Marine Saline GradientMKDKRTYTKLKEHGEDMTHENESKITNEDRGPLDLT
Ga0181377_101979253300017706MarineMKDKRTYTNLKEHGIDMTYENESKVDPKEDRGPGDLSLL
Ga0181369_105025113300017708MarineMKEKRTYTHLKEHGEDMTHENEFKVDLKEDRGQLDLTRQIDE
Ga0181391_113137823300017713SeawaterMKDKRTYTNKKEHGEDMSHENESKITNEDRGPLDLTLLTEQYR
Ga0181391_115542313300017713SeawaterMKDKRTYTNLKEHGEDMSHENESKTNLSEDRDPGDLTLL
Ga0181404_115157713300017717SeawaterMKEKRTYTHLKEHGEDITHENEFQVNIKEDRGQLDL
Ga0181383_115146523300017720SeawaterMKDKRTYTHLKEHGEDMTHENESKITIDPNYRENRGPGDLSLLIE
Ga0181383_117297723300017720SeawaterMKDKRTYINKKEHGEDMSHENESKMTKDDRGPLDLTLLTEQYKADIKKYQDRETL
Ga0181373_104077213300017721MarineMKDKRTYTHLKEHGEDMSHENESKITNEPKEDRGTLDLAFLIDEHKAEIWKYK
Ga0181373_108854723300017721MarineMQDKRTYTHLKEHGEDMTHENEFKVDMKEDRGPLDLTKQIEDLHL
Ga0181388_114097613300017724SeawaterMKDKRTYTKLKEHGEDMTHENESKITIDPNYKEDRRPN
Ga0181428_115728923300017738SeawaterMKDKRTYTHLKEHGEDMTHENESKTKLSEDRGPGDLSLLVELHKK
Ga0181402_113980013300017743SeawaterMKDKRTYTHLKEHGEDMTHENESKVDPKEDRGPGDLSLLV
Ga0181393_117251913300017748SeawaterMKDKRTYTHLKEHGEDMSHENESKVDPKEDRGPGDLS
Ga0181392_116842113300017749SeawaterMKDKRTYTKLKEHGEDMSHENESKVKPREDRGALDLSFLI
Ga0181407_111322513300017753SeawaterMKDKRTYTNKKEHGEDMSHENESKITNEDRGPLDLTLLTEQYRADLKK
Ga0181411_109512233300017755SeawaterMKDKRTYINKKEHGEDMTHENESKMTKEDRGPLDLTLLTE
Ga0181409_109124033300017758SeawaterMKEKRTYTHLKEHGEDITHENEFKVDLKEDRGQLDLTRQ
Ga0181385_108998533300017764SeawaterMKEKRTYTHLKEHGEDMTHENEFKVDLKEDRGQLDLTRQMDELNSLLRSE
Ga0181406_111967123300017767SeawaterMKDKRTYTNKKEHGEDMTHENETKLTNEDRGPLDLTLLIEMHKKEIWEW
Ga0181425_117271813300017771SeawaterMKDKRTYTNKKEHGEDMTHENESKITNEDRGPLDITL
Ga0181394_112270513300017776SeawaterMKDKRTYTNAKEHGEDMSHENETKIKHEPKEDRGALDLTFLLEQHKKEI
Ga0181394_123725713300017776SeawaterMKDKRTYTKLKEHGEDMSHENESKITNEDRGPLDLTS
Ga0194029_104895823300019751FreshwaterMKDKRTYTNLKEHGEDMSHENESKIINEARDPLAVTLL
Ga0211576_1045754323300020438MarineMKEKRTYTHLKEHGEDMTHENEFKVDLKKDRGHLGLTRQIDELKQT
Ga0211518_1034663113300020440MarineMKDKRTYTHLKEHGEDMTHENESKVDPKEDRGPGDLSLL
Ga0211548_1042594513300020454MarineMKDKRTYNKLKEHGEDMSHENESKVDPKEDRGALDITLL
Ga0222717_1025975833300021957Estuarine WaterMKEKRTYTHLKEHGEDMTHENEFKVDLKKGRGHLGLT
Ga0212020_105770913300022167AqueousMKDKRTYTKLKEHGEDMTHENESKITNEDRGPLDLTLLT
Ga0196887_105297013300022178AqueousMKDKRTYTHLKEHGEDMTHENESKITIDPNYREDR
Ga0196891_103506033300022183AqueousMKDKRTYTHLKEHGEDMTHENESKVDPKEDRGSLDLTFMIEQHK
Ga0196891_104519933300022183AqueousMKDKRTYTKLKEHGEDMTHENESKITNEDRGPLDLTLLTEQYRD
Ga0196891_109483113300022183AqueousMKDKRTYTKLKEHGEDMTHENESKITNEDRGPLDLTLLTEQYR
(restricted) Ga0233437_114963113300024259SeawaterMKDKRTYTKLKEHGEDMSHENESTITNEDRGALDLTFLIEQHKQ
Ga0207905_106212623300025048MarineMKEKRTYTHLKEHGEDISHENEVKLEPREDRGQLDLTRQID
Ga0207896_106257023300025071MarineMKDKRTYTHLKEHGEDMTHENESKITVDPNYKKDTN
Ga0208298_106346913300025084MarineMKDKRTYTNLKEHGEDMSHENEAKITNEPKEERGTLDLTFLIE
Ga0208157_104960333300025086MarineMKDKRTYTNAKEHGEDMSHENETKIKHEPKEDRGSL
Ga0208669_103691233300025099MarineMKDKRTYKYEKEHGEDMSHENESTVKPSEDRGPGDLTLLTEQYK
Ga0208669_110093123300025099MarineMKDKRTYTHLKEHGEDMTHENESKITIDPNYKEDRGPGDLS
Ga0208666_111107113300025102MarineMKDKRTYTNAKEHGEDMSHENETKIKHEPKEDRGALDLTFLIEQHRKE
Ga0208013_107245513300025103MarineMKDKRTYNNLKEHGEDMSHENEAKIKHEAKEDRGPLDITLLTEQYRRDLFKYQQKEA
Ga0208158_110556023300025110MarineMKDKRTYTHKKEHGEDMSHENETKITNEDRGPLDLTLLIELHQNRKPTVW
Ga0209535_103611553300025120MarineMKEKRTYTHLKEHGEDMTHENEFKIDIPEDRGTLDLSRQIDELRQ
Ga0209535_117374813300025120MarineMKEKRTYTHLKEHGEDISHENEVKLEPREDRGQLDLTRQIDELKET
Ga0209336_1015299123300025137MarineMKDKRTYTHLKEHGEDISHENEVKLEPGEDRGQLDLTRQIDELKET
Ga0209634_124401723300025138MarineMKDKRTYTHLKEHGEDITHENEFKVEMKEDRGPLD
Ga0209756_126047923300025141MarineMKDKRTYKNIKEYGEDMSHENEAKIKHEAKEDRGPLDITLLTEQYKADLFKYQQKEAEYIKTK
Ga0209756_128801913300025141MarineMKDKRTYTKLKEHGEDMTHENERKHSNEDRGGGDLTFL
Ga0208179_106993223300025267Deep OceanMKDKRTYTNAKEHGEDMSHENEAKIKSAPSKEDRGMGD
Ga0209194_104931713300025632Pelagic MarineMKDKRTYTHLKEHGEDMTHENESKITVDPNYKKDTNPLAVTLLTEQYRADLKK
Ga0208425_104225413300025803AqueousMKDKRTYTHLKEHGEDMSHENESKVDPKEDRGPGD
Ga0209193_113832223300025816Pelagic MarineMKDKRTYTHLKEHGEDMTHENESKTKLSDDRGPLDLTLLTEQYRSDLKKYQ
Ga0208644_116766833300025889AqueousMKDKRTYTHLKEHGEDMTHENESKITVDPNYKKDTNPLAVTLLTEQYRADL
Ga0208130_106230813300026258MarineMKDKRTYTNAKEHGEDMSLENEVKIKHEPKEDRGPGDLSLLNEQHKAEIWEWK
(restricted) Ga0255052_1043161523300027865SeawaterMKDKRTYTKLKEHGEDMSHENESTITNEDRGALDLTFLIEQHKQEIWEF
Ga0257110_127868713300028197MarineMKDKRTYTNLKEHGEDMSHENESKITNEARDPLAV
Ga0228627_112991123300028414SeawaterMKEKRTYTHLKEHGEDITHENEFQVNIKEDRGQSDLTRQIDEL
Ga0307488_1041995833300031519Sackhole BrineMKDKRTYTNLKEHGEDMSHENESKITNEDRGPLDLTLL
Ga0310344_1043711533300032006SeawaterMKDKRTYTKLKEHGEDMTHENERKHSNEDRGVGDLT
Ga0316203_106913713300032274Microbial MatMKDKRTYTHLKEHGEDISHENEVKLEPGEDRGQLDLTRQIDELK
Ga0316202_1045347413300032277Microbial MatMKDKRTYTNKKEHGEDMSHENESKITNEDRGPLDLTLLTEQY


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