 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F087414 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 110 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAALPHDGRKDR |
| Number of Associated Samples | 99 |
| Number of Associated Scaffolds | 110 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 73.64 % |
| % of genes near scaffold ends (potentially truncated) | 41.82 % |
| % of genes from short scaffolds (< 2000 bps) | 92.73 % |
| Associated GOLD sequencing projects | 95 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (59.091 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (28.182 % of family members) |
| Environment Ontology (ENVO) | Unclassified (29.091 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (45.455 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 110 Family Scaffolds |
|---|---|---|
| PF07992 | Pyr_redox_2 | 8.18 |
| PF03401 | TctC | 6.36 |
| PF01323 | DSBA | 4.55 |
| PF13462 | Thioredoxin_4 | 3.64 |
| PF08031 | BBE | 2.73 |
| PF11185 | DUF2971 | 0.91 |
| PF13428 | TPR_14 | 0.91 |
| PF13899 | Thioredoxin_7 | 0.91 |
| PF09982 | DUF2219 | 0.91 |
| PF07681 | DoxX | 0.91 |
| COG ID | Name | Functional Category | % Frequency in 110 Family Scaffolds |
|---|---|---|---|
| COG3181 | Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC | Energy production and conversion [C] | 6.36 |
| COG0277 | FAD/FMN-containing lactate dehydrogenase/glycolate oxidase | Energy production and conversion [C] | 2.73 |
| COG2259 | Uncharacterized membrane protein YphA, DoxX/SURF4 family | Function unknown [S] | 0.91 |
| COG4270 | Uncharacterized membrane protein | Function unknown [S] | 0.91 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 59.09 % |
| All Organisms | root | All Organisms | 40.91 % |
| Visualization |
|---|
| Powered by ApexCharts |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 28.18% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 5.45% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 5.45% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 4.55% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 4.55% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.55% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 4.55% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 3.64% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.64% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.64% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 2.73% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.73% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.82% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 1.82% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.82% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.82% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 1.82% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.82% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.82% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.82% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.82% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.91% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.91% |
| Soil | Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil | 0.91% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.91% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.91% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.91% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.91% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000033 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001164 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 | Environmental | Open in IMG/M |
| 3300001661 | Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly) | Environmental | Open in IMG/M |
| 3300002459 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 | Host-Associated | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300004643 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3 | Environmental | Open in IMG/M |
| 3300005147 | Soil and rhizosphere microbial communities from Laval, Canada - mgLMC | Environmental | Open in IMG/M |
| 3300005165 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMC | Environmental | Open in IMG/M |
| 3300005173 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMA | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
| 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Host-Associated | Open in IMG/M |
| 3300006038 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Host-Associated | Open in IMG/M |
| 3300006048 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Host-Associated | Open in IMG/M |
| 3300006196 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 | Host-Associated | Open in IMG/M |
| 3300006353 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Host-Associated | Open in IMG/M |
| 3300006574 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006606 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006853 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4 | Host-Associated | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006914 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010036 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26 | Environmental | Open in IMG/M |
| 3300010040 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010397 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012891 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2 | Environmental | Open in IMG/M |
| 3300012893 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1 | Environmental | Open in IMG/M |
| 3300012897 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1 | Environmental | Open in IMG/M |
| 3300012902 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1 | Environmental | Open in IMG/M |
| 3300012915 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2 | Environmental | Open in IMG/M |
| 3300012916 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2 | Environmental | Open in IMG/M |
| 3300012939 | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015 | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
| 3300012984 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG | Environmental | Open in IMG/M |
| 3300012987 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG | Environmental | Open in IMG/M |
| 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015077 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2) | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017965 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T | Environmental | Open in IMG/M |
| 3300018066 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1 | Environmental | Open in IMG/M |
| 3300018073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1 | Environmental | Open in IMG/M |
| 3300018465 | Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300018476 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T | Environmental | Open in IMG/M |
| 3300019356 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) | Environmental | Open in IMG/M |
| 3300019362 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) | Environmental | Open in IMG/M |
| 3300022756 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026846 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMA (SPAdes) | Environmental | Open in IMG/M |
| 3300027181 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027381 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027383 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027866 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028710 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380 | Environmental | Open in IMG/M |
| 3300028712 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139 | Environmental | Open in IMG/M |
| 3300028803 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120 | Environmental | Open in IMG/M |
| 3300028814 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 | Environmental | Open in IMG/M |
| 3300028824 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197 | Environmental | Open in IMG/M |
| 3300030336 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1 | Environmental | Open in IMG/M |
| 3300031152 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S | Environmental | Open in IMG/M |
| 3300031199 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S | Environmental | Open in IMG/M |
| 3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031854 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1 | Environmental | Open in IMG/M |
| 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Host-Associated | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300033475 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC | Environmental | Open in IMG/M |
| 3300033550 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| ICChiseqgaiiDRAFT_08842763 | 3300000033 | Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPANEATDAPAAAGLQHASHRDR* |
| JGI10216J12902_1003231522 | 3300000956 | Soil | MVRDILIMLAAVAMIVAFAPKVSQGVNTPASEATSAPVTAGLQHDGQKDR* |
| JGI11823J13286_10046412 | 3300001164 | Forest Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPASEATNAAVTADLQHD |
| JGI12053J15887_100018442 | 3300001661 | Forest Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPASEATNAAVTADLQHDGRTSR* |
| JGI24751J29686_101312921 | 3300002459 | Corn, Switchgrass And Miscanthus Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDG |
| Ga0062593_1014152022 | 3300004114 | Soil | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNVPAAAGLQHASHKDR* |
| Ga0062593_1024978411 | 3300004114 | Soil | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNAPAAAGLQHASHRDR* |
| Ga0062593_1026533711 | 3300004114 | Soil | MVRDILIMLAAVAAMVAFAPKVSHGVNTPANEATDAPAAAGLQHASHRDR* |
| Ga0062595_1004185352 | 3300004479 | Soil | MVRDILIMLAAVAMIVAFAPKVSQGVNTPASEATSAPVTAGLQHDGHKDR* |
| Ga0062591_1010852581 | 3300004643 | Soil | DILIMLAAVAMIVAFAPKVSQGVNAPASEATSAPVTAGLQHDGHKDR* |
| Ga0066821_10120351 | 3300005147 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR* |
| Ga0066869_100599121 | 3300005165 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTA |
| Ga0066822_10175302 | 3300005173 | Soil | LAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR* |
| Ga0070690_1002013302 | 3300005330 | Switchgrass Rhizosphere | MVRDILIMLAAVAAIVAFAPKVSHGVNPPANEATNAPAAAGLQHASHRDR* |
| Ga0070710_101143752 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHHGRKDR* |
| Ga0070663_1010715732 | 3300005455 | Corn Rhizosphere | MVRDILIMLAAVAMIVAFAPKVSQGVNAPASEATSAPVTAGLQHDGHKDR* |
| Ga0070695_1011537431 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | PFGLTRSVMVRDILIMLAAVAAIVAFAPKVSHGVNTPVQDAADAPVTAALPHDGKSSR* |
| Ga0070696_1012718672 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVAASVQHEGKTSR* |
| Ga0068855_1015550962 | 3300005563 | Corn Rhizosphere | MVRDILIMLAAVAAIVAFAPKVSHGVNTPAQEAVDAPVAASVQHEGKTSR* |
| Ga0070664_1005780751 | 3300005564 | Corn Rhizosphere | MLAAVAAIVAFAPKVSHGVNTPAQEAVDAPVAASVQHEGKTSR* |
| Ga0068859_1021958971 | 3300005617 | Switchgrass Rhizosphere | MIRDVLIMLAAVAAIVAFAPKVSHGVNTPANEATDAPAAAGLQHASHRDR* |
| Ga0075365_101339962 | 3300006038 | Populus Endosphere | MVRDILIMLAAVAAIVAFAPKVSHGVNTPAKDAADAPAAAVQHDGKTDR* |
| Ga0075365_104520772 | 3300006038 | Populus Endosphere | MVRDILIMLAAVAAMVAFAPKVSHGVKTSANQATNAPAAAGLQHASHKDR* |
| Ga0075365_106465652 | 3300006038 | Populus Endosphere | MVRDILIMLAAVAIIVAFAPKVSQGVNTPASEATSAPVTAGLQHDGHKDR* |
| Ga0075363_1006725822 | 3300006048 | Populus Endosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKETANAPVTAALPHDGKSSR* |
| Ga0075422_100726572 | 3300006196 | Populus Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAP |
| Ga0075370_102574121 | 3300006353 | Populus Endosphere | LAAVAAIVAFAPKVSHGVNTPAKETANAPVTAALPHDGKTGR* |
| Ga0074056_117938792 | 3300006574 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAALPHDSRKDR* |
| Ga0074062_100482411 | 3300006606 | Soil | VAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR* |
| Ga0075420_1004837972 | 3300006853 | Populus Rhizosphere | MVRDILIMLAAVAMIVAFAPKVSQGVSAPASEATSAPVTAGLQHDGQKDH* |
| Ga0075434_1013793812 | 3300006871 | Populus Rhizosphere | MVRDILIMLAAVAAIVAFAPKVSHGVNTPAKETANAPVTAALPHDGTTGR* |
| Ga0075436_1007757171 | 3300006914 | Populus Rhizosphere | AVAAIVAFAPKVSHGVNPPANEATNVPAAAGLQHASHKDR* |
| Ga0111538_105239592 | 3300009156 | Populus Rhizosphere | MVRDILIMLAAVAAIVAFAPKVSHGVNPPAPEAVDASVTAALPHDGKTSR* |
| Ga0105237_120599961 | 3300009545 | Corn Rhizosphere | VAAIVAFAPKVSHGVNPPANEATNAPTAAGLQHASHRDR* |
| Ga0105249_104519662 | 3300009553 | Switchgrass Rhizosphere | MVRDILIMLAAVAAMVAFAPKVSHGVNPPANEATNVPAAAGLQHASHKDR* |
| Ga0126305_105704781 | 3300010036 | Serpentine Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPTKDAVDAPVTAALPHDGKTDR* |
| Ga0126308_112664551 | 3300010040 | Serpentine Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKDVVDAPVTATLPHDGKTDR* |
| Ga0134125_101700152 | 3300010371 | Terrestrial Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNAPAKEAVDAPVTAALPHDGRKDR* |
| Ga0134128_110727171 | 3300010373 | Terrestrial Soil | GSVMVRDILIMLAAVAAMVAFAPKVTHGVNTPANEATDAPAAAGLQHASHRDR* |
| Ga0105239_114107682 | 3300010375 | Corn Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGMNTPAQEAVDAPVTAALPHDSRKDR* |
| Ga0134126_119912971 | 3300010396 | Terrestrial Soil | ILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR* |
| Ga0134124_114747382 | 3300010397 | Terrestrial Soil | VMVRDILIMLAAVAAMVAFAPKVSHGVNTPANEATDAPAAAGLQHASHRDR* |
| Ga0134122_101100132 | 3300010400 | Terrestrial Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPANEAVDAPVTAALPHDGRKDR* |
| Ga0105246_122209652 | 3300011119 | Miscanthus Rhizosphere | ILIMLAAVAAVVAFAPKVSHGMNTPAQEAVDAPVTAALPHDSRKDR* |
| Ga0150985_1131367711 | 3300012212 | Avena Fatua Rhizosphere | MVRDILIMLAAVAAIVAFAPKVSHGVNTPAKETANAPVTAALPHDGKTDR* |
| Ga0150985_1189600281 | 3300012212 | Avena Fatua Rhizosphere | PFGLTRYVMIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR* |
| Ga0150984_1223512351 | 3300012469 | Avena Fatua Rhizosphere | MVRDILIMLAAVAAIVAFAPKVSHGVNTPAKETANAPVTAALPHDGKTGR* |
| Ga0157305_101491871 | 3300012891 | Soil | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNVPAAAGLQHASHRDR* |
| Ga0157284_102450711 | 3300012893 | Soil | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPAHEATNAPAA |
| Ga0157285_101370982 | 3300012897 | Soil | LIMLAAVAAIVAFAPKVSHGVNPPANEATNAPAAAGLQHASHRDR* |
| Ga0157291_102767672 | 3300012902 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAALPHDGRKDR* |
| Ga0157302_104578132 | 3300012915 | Soil | VRDILIMLAAVAAIVAFAPKVSHGVNTPAQEAVDAPVAASVQHEGKTSR* |
| Ga0157310_104671862 | 3300012916 | Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPAQEAVDAP |
| Ga0162650_1000066301 | 3300012939 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKDAVDAPITAALPHDGKTDR* |
| Ga0164300_100896993 | 3300012951 | Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTSANQATNAPAAAGLQHASHKDR* |
| Ga0164303_100795411 | 3300012957 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKDAVDAPVTAALPHDGR* |
| Ga0164303_100925954 | 3300012957 | Soil | MLAAGAAVVAVGPKVAHGVNTPAQEAVDAPVTAAPPHHGRKDR* |
| Ga0164301_100859791 | 3300012960 | Soil | MLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR* |
| Ga0164309_113171121 | 3300012984 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGMNTPAQEAVDAPVTAALPHDGR* |
| Ga0164307_110464011 | 3300012987 | Soil | MVRDILIMLAAVAMIVAFAPKVSHGMNTPAQEAVDAPVTAALPHDSRKDR* |
| Ga0157375_105074672 | 3300013308 | Miscanthus Rhizosphere | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNAPTAAGLQHASHRDR* |
| Ga0157375_111755211 | 3300013308 | Miscanthus Rhizosphere | VMIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR* |
| Ga0163163_104319783 | 3300014325 | Switchgrass Rhizosphere | FGLTRHVMIRDILIMLAAVAAIVAFAPKVSHGVNTPAKDAVDAPVTAALPHDSRKDR* |
| Ga0157379_109009662 | 3300014968 | Switchgrass Rhizosphere | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNAPAA |
| Ga0173483_104099522 | 3300015077 | Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR* |
| Ga0173483_104815691 | 3300015077 | Soil | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNAPAAAGLQHASHKDR* |
| Ga0132258_101509591 | 3300015371 | Arabidopsis Rhizosphere | MIRDILIMLVAVAAVVAFAPKVSHGVNTPAKDAVDAPVTAALPHDGRKDR* |
| Ga0132256_1010401372 | 3300015372 | Arabidopsis Rhizosphere | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNAPAAAGLQHVSHRDR* |
| Ga0132257_1014003561 | 3300015373 | Arabidopsis Rhizosphere | MIRDVLIMLAAVAAIVAFAPKVSHGVNTPANEATDAPAAAGLQHVSHKDR* |
| Ga0132255_1004885052 | 3300015374 | Arabidopsis Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKDAVDAPVTAALPHDGRKDR* |
| Ga0132255_1007156651 | 3300015374 | Arabidopsis Rhizosphere | MVRDILIMLAAVAAMVAFAPKVSHGVNTPANEATDA |
| Ga0190266_105630002 | 3300017965 | Soil | AAVAAVVAFAPKVSHGVNTPAKDAVDAPFTAALPHDGKTYR |
| Ga0184617_11249982 | 3300018066 | Groundwater Sediment | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAALPHDGKTDR |
| Ga0184624_103613671 | 3300018073 | Groundwater Sediment | MLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAALPHDGKTDR |
| Ga0190269_113646931 | 3300018465 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTADVQHDGKTER |
| Ga0190270_101180771 | 3300018469 | Soil | FGLTRYVMIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTADVQHDGRKDR |
| Ga0190270_101371162 | 3300018469 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTADVQHDGRKDR |
| Ga0190270_103491202 | 3300018469 | Soil | AAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR |
| Ga0190274_102661712 | 3300018476 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKDAVDAPVTAALPHDGKTDR |
| Ga0173481_104434401 | 3300019356 | Soil | MVRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR |
| Ga0173479_104457821 | 3300019362 | Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPAKETASAPVTAALPHDGKTGR |
| Ga0222622_103159842 | 3300022756 | Groundwater Sediment | MIRDILIMLAAVAAVVAFAPKVSHGVNTPANEAVDAPVTAALPHDGRKDR |
| Ga0207663_103156271 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAALPHDSRKDR |
| Ga0207662_100075631 | 3300025918 | Switchgrass Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVT |
| Ga0207650_100904423 | 3300025925 | Switchgrass Rhizosphere | MVRDILIMLAAVAAMVAFAPKVSHGVNTPANEATDAPAAAGLQHASHRDR |
| Ga0207709_106497362 | 3300025935 | Miscanthus Rhizosphere | AVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR |
| Ga0207639_106865462 | 3300026041 | Corn Rhizosphere | VAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR |
| Ga0207641_101869172 | 3300026088 | Switchgrass Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRK |
| Ga0207674_113375371 | 3300026116 | Corn Rhizosphere | MVRDILIMLAAVAAMVAFAPKVSHGVNTPANEATD |
| Ga0208273_1025852 | 3300026846 | Soil | MLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR |
| Ga0208997_10473332 | 3300027181 | Forest Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPASEATNAAV |
| Ga0208983_10313932 | 3300027381 | Forest Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPASEATNAAVTADLQHDGRTSR |
| Ga0209213_10388092 | 3300027383 | Forest Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNTPASEATNAAVTADRSTT |
| Ga0209813_100513531 | 3300027866 | Populus Endosphere | MVRDILIMLAAVAMIVAFAPKVSQGVNAPASEATSAPVTAGLQHDGHKDR |
| Ga0268265_116246771 | 3300028380 | Switchgrass Rhizosphere | FPFGLTRYVMIRDILIMLAAVAAVVAFAPKVSHGVNTPAPEAVDAPVTAAPPHDGRKDR |
| Ga0307322_101293212 | 3300028710 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKEAVDAPVTADVQHDGRKDR |
| Ga0307285_102092011 | 3300028712 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKDAVDAPFTAALPHDGKTDR |
| Ga0307281_102699601 | 3300028803 | Soil | MVRDILIMLAAVAAIVAFAPKVSHGVNPPANEATNAPAAAGLQHVSHRDR |
| Ga0307302_107016371 | 3300028814 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKDAVDAPVTAALP |
| Ga0307310_103030261 | 3300028824 | Soil | VAFAPKVSHGVNTPAKEAVDAPVTADVQHDGRKDR |
| Ga0247826_115636801 | 3300030336 | Soil | VSRDILIMLAAVAAVVAFAPKVSHGVNTPANEAVDAPVTAALPHDGRKDR |
| Ga0307501_100309452 | 3300031152 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPLHDGRKDR |
| Ga0307495_101401431 | 3300031199 | Soil | VMIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR |
| Ga0310813_107519282 | 3300031716 | Soil | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNAPTAAGLQHASHRDR |
| Ga0307468_1002071472 | 3300031740 | Hardwood Forest Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHH |
| Ga0310904_113083232 | 3300031854 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAALPHDGRKDR |
| Ga0307409_1024049831 | 3300031995 | Rhizosphere | MIRDILIMLAAVAAVVAFAPKVSHGVNTPAKDAVDAPVTAALPHGGKTDR |
| Ga0310890_103149171 | 3300032075 | Soil | MIRDVLIMLAAVAAIVAFAPKVSHGVNPPANEATNVP |
| Ga0310811_103360921 | 3300033475 | Soil | MVRDILIMLAAVAAMVAFAPKVSHGVNTPANEATDAPAAAALQHASHRDR |
| Ga0247829_110598222 | 3300033550 | Soil | MIRDILIMLAAVAAVVAFAPKVSHGVNTPANEAVDA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |