Metagenome / Metatranscriptome Family F087439

Basic Information
Family ID	F087439
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	42 residues
Representative Sequence	HLTKVLPAVPVPPPNVQVRNAPNQAAVEQTLNNLGLTSLLR
Number of Associated Samples	74
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	27.27 %
% of genes from short scaffolds (< 2000 bps)	28.18 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Unclassified (97.273 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (79.091 % of family members)
Environment Ontology (ENVO)	Unclassified (49.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (86.364 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.49% β-sheet: 0.00% Coil/Unstructured: 85.51%
Feature Viewer

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
All Organisms	root	All Organisms	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
cellular organisms	root	All Organisms → cellular organisms	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Panarthropoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Arthropoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Chelicerata	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Arachnida	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Acari	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Acariformes	superorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Trombidiformes	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Prostigmata	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Eupodina	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Bdelloidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	2.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300011120\|Ga0150983_11289843	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	866	Open in IMG/M
3300011120\|Ga0150983_14763213	Not Available	670	Open in IMG/M
3300012212\|Ga0150985_122028668	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1176	Open in IMG/M
3300027860\|Ga0209611_10464108	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	716	Open in IMG/M
3300030531\|Ga0210274_1087491	Not Available	571	Open in IMG/M
3300030570\|Ga0247647_1271088	Not Available	509	Open in IMG/M
3300030577\|Ga0210260_10297927	Not Available	570	Open in IMG/M
3300030589\|Ga0210255_10250489	Not Available	514	Open in IMG/M
3300030593\|Ga0210263_1192240	Not Available	527	Open in IMG/M
3300030604\|Ga0247637_1157061	Not Available	563	Open in IMG/M
3300030622\|Ga0265391_10280801	Not Available	545	Open in IMG/M
3300030625\|Ga0210259_10570850	Not Available	562	Open in IMG/M
3300030738\|Ga0265462_11575065	Not Available	616	Open in IMG/M
3300030738\|Ga0265462_12103666	Not Available	552	Open in IMG/M
3300030738\|Ga0265462_12420898	Not Available	522	Open in IMG/M
3300030741\|Ga0265459_12806040	Not Available	606	Open in IMG/M
3300030743\|Ga0265461_13340923	Not Available	542	Open in IMG/M
3300030748\|Ga0074043_10108275	Not Available	589	Open in IMG/M
3300030748\|Ga0074043_11293159	Not Available	556	Open in IMG/M
3300030867\|Ga0102749_1474150	Not Available	565	Open in IMG/M
3300030935\|Ga0075401_11700306	Not Available	556	Open in IMG/M
3300030937\|Ga0138302_1508744	Not Available	629	Open in IMG/M
3300030949\|Ga0074031_1806556	Not Available	603	Open in IMG/M
3300030979\|Ga0068589_10022900	Not Available	531	Open in IMG/M
3300030996\|Ga0074004_11449230	Not Available	538	Open in IMG/M
3300031122\|Ga0170822_12596399	Not Available	518	Open in IMG/M
3300031122\|Ga0170822_16550596	Not Available	545	Open in IMG/M
3300031231\|Ga0170824_112679951	Not Available	506	Open in IMG/M
3300031469\|Ga0170819_10284695	Not Available	597	Open in IMG/M
3300031474\|Ga0170818_114768553	Not Available	574	Open in IMG/M
3300032756\|Ga0315742_12279543	Not Available	612	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.82%
Host-Associated	Host-Associated	5.45%
Engineered	Engineered	2.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.82%
Plants	Host-Associated → Plants	4.55%
Bioremediation	Engineered → Bioremediation	1.82%
Human	Host-Associated → Human	0.91%
Wastewater	Engineered → Wastewater	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.91%
Peat Moss	Host-Associated → Plants → Peat Moss	2.73%
Hydrocarbon	Engineered → Bioremediation → Hydrocarbon	1.82%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%
Digestive System	Host-Associated → Human → Digestive System	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.91%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.18%
Loam	Environmental → Terrestrial → Soil → Loam	2.73%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	2.73%
Unclassified	Engineered → Bioremediation → Hydrocarbon → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	87.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	2.73%
Unclassified	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	79.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	2.73%
Wastewater Bioreactor	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	0.91%
Wastewater Effluent	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003407	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan	Engineered	Open in IMG/M
3300006185	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_biof - 1398105538229 (version 2)	Engineered	Open in IMG/M
3300007250	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 B RNA (Eukaryote Community Metatranscriptome)	Engineered	Open in IMG/M
3300009411	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_OS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010199	Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fd - Sphagnum fallax MT (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300030528	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030529	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE013SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030531	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO038SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030532	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE108SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030535	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO749-VDE026SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030542	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR003SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030545	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO033SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030550	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bb8 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030568	Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF3-1 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300030570	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb12 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030575	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE050SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030577	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO131-ARE010SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030578	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030581	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO031SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030588	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE011SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030589	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR019SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030593	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE024SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030594	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO089SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030596	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030597	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE046SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030604	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb2 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030607	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb4 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030622	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE044SO (Eukaryote Community Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030625	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO122-ANR120SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030630	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO151-VCO115SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030631	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO086SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030748	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter C3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030757	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030779	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030789	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030800	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral N1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030839	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFB (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030848	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030866	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030867	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030922	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_OS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030932	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-1B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030933	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter N2 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030935	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030946	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030949	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030971	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030979	Forest soil microbial communities from France, for metatranscriptomics studies - Site 11 - Champenoux / Amance forest (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030980	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus N2 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030992	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter N3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030996	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-3B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031008	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter N1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031023	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031034	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter C1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031035	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus N1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031136	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300033523	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26536J50258_10737092	3300003407	Wastewater Bioreactor	TKVLPPIPVPPPNVQVRNAPNQAAVEKTLNDLGLTSLIR*
Ga0097682_10267071	3300006185	Wastewater Bioreactor	KVLPPIPVPPPNVQVRNAPNQAAVEKTLNDLGLTSLIR*
Ga0075165_18630111	3300007250	Wastewater Effluent	HFTRMLPAMPVPPPNVQVRNAPNQETVEQTLNKLGLSSLIR*
Ga0115017_10341451	3300009411	Soil	AIPTPPPNVQVRNAPDYATLERTLNDLGLTASMFQ*
Ga0115017_11166513	3300009411	Soil	MLPAQPVPPPVVQVRGAPNQAAVEKTLNGLGLTSL*
Ga0115017_11230731	3300009411	Soil	PQHVPTTHLTKLLPAIPVPPPNVQVRNAPDHATVQRTLQNLGLTSQ*
Ga0115017_13820541	3300009411	Soil	QVPAPPPHVQVRNAPDQATVERTLNNLGLTSHYRN*
Ga0116226_102507641	3300009787	Host-Associated	MLAAMPVPPPNVQVRNAPDAATLERTLNGLGLTSVLQ*
Ga0127508_12896081	3300010199	Host-Associated	IPTTHVTKMLAAMPVPPPNVQVRNAPDAATLERTLNGLGLTSVLQ*
Ga0150983_107292131	3300011120	Forest Soil	IPTTHLTKLLPAVPVPPPNVQVRNAPDQAMVEKTLNDLGLTSLLL*
Ga0150983_112898431	3300011120	Forest Soil	TKMLPPIPVPPPNVHVRGAPSHDAVERTLNGLGLTSRIN*
Ga0150983_147632131	3300011120	Forest Soil	PRPKQIPTTYLTKVLPAVPVPPPNVQVRNAPDQAMVEKTLNELGLTSLLQ*
Ga0150985_1220286681	3300012212	Avena Fatua Rhizosphere	LPAVPVPPPNVQIRNAPDQATVEKTLNELGLTALLR*
Ga0206352_108028001	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	LTRVLPAVPVPPPNVQVRGAAPDQAAVERALNGLGLTSRAQ
Ga0209611_104641081	3300027860	Host-Associated	LTKVLPPLPVPPPHIQVRNAPDQATVERTLKDLGLT
Ga0210277_103651821	3300030528	Soil	PLPRHVPTTYLSRMLPAVPVPPPNVQVRGNPDQATVEQTLNSLCLSATL
Ga0210277_110689481	3300030528	Soil	TTHLTKMLPAAPIPPPNVQIRNAPDQATVEKTLNELGLTSLLK
Ga0210284_17118741	3300030529	Soil	LTKVLPPVPAPPPNVQVRNAPDQATLERTLHSLGLRSQ
Ga0210274_10874911	3300030531	Soil	PRPKHIPTTLLTKVLPAIPVPPPNVQIRNAPDQATVERTLNNLGLTSK
Ga0210290_12803141	3300030532	Soil	PAVPVPPPNVQVRNAPDQAMVEKTLNDLGLTSLLL
Ga0210285_11880771	3300030535	Soil	KVLPAVPVPPPNVQVRNAPDQAMVEKTLNELGLTSLLQ
Ga0210249_12579141	3300030542	Soil	LLTKVLPPVPAPPPNVQIRNAPDQATVERTLNNLGLTSKLNK
Ga0210271_105162761	3300030545	Soil	LTKMLPAAPIPPPNVQIRNAPDQATVEKTLNELGLTSLLK
Ga0247631_10841881	3300030550	Soil	TTHLTKVLPAVPVPPPNVQVRNAPDQATVEKTLNDLGLSSLLK
Ga0257206_11107261	3300030568	Host-Associated	LAAMPVPPPNVQVRNAPDAATLERTLNGLGLTSLLQ
Ga0247647_12710881	3300030570	Soil	PPRPKHIPTTRLTKLLPAVPVPPPNVQIRNAPDQATLEKTLNELGLTSLLLQ
Ga0210288_11643461	3300030575	Soil	PTTVVTRLLPPIPAPPPNVQVRNAPHRATVERTLNNLGLTSH
Ga0210260_102979271	3300030577	Soil	QIPTTVVTKLLPPIPAPPPNVTVRNAPDRATVERTLNNLGLTSH
Ga0210275_101715721	3300030578	Soil	MLTKVLPPVPAPPPNVQVRNAPDQATVERTLKELGLSSFIS
Ga0210275_103408741	3300030578	Soil	TKVLPATPMPPPNVQVRNAPDQVTLERTLNGLGLTSLLQ
Ga0210270_14506601	3300030581	Soil	TTHLTKVLPAVPVPPPNVQVRNAPSQAAVEQTLNKLGLSSLVR
Ga0210283_13837111	3300030588	Soil	KVLPPVPAPPPNVQIRNAPDQATVERTLNNLGLTSKLNK
Ga0210255_102504891	3300030589	Soil	RPQQIPTTHLTKMLPAIPVPPPNIQVRNAPDRATLERTLNGMGLTSMLQ
Ga0210255_111254591	3300030589	Soil	RPMAIPTTHLTKILPAQPIPPPNVQIRNAPDQATVEKTLNELGLTSLLK
Ga0210255_111879241	3300030589	Soil	KVLPPVPAPPPHVQVRNAPDQATVERTLNNLGLTSKLNK
Ga0247612_11360961	3300030592	Soil	RLTKVLPAVPVPPPNVQVRNAPDQATVEKTLNELGLSSLLR
Ga0210263_11922401	3300030593	Soil	PKHVPTTHLTKVLPRIPAPPPNIQVRNAPNHAAVEYTLNNMGLTSKFQ
Ga0210280_11722841	3300030594	Soil	HLTKLLPAIPTPPPNVQVRNAPDRATLEKTLNDLGLTSMLQ
Ga0210278_10042951	3300030596	Soil	HLTKVLAAVPVPPPNVQVRNAPNQAAVEKTLNELGLTSLLR
Ga0210286_12296441	3300030597	Soil	HYTKVLAAVPAPPPNVQVRNAPDQATVEKTLNELGLSSLLK
Ga0247637_11570611	3300030604	Soil	RPQHIPTTHLTKVLPALPVPPPNVQVRNAPDQATLEKTLNDLGLTSLLLR
Ga0247615_103277331	3300030607	Soil	PAMPVPPPNVQVRNAPNQAAVERTLKELGLSSFLR
Ga0265391_102808011	3300030622	Soil	PKQIPPTLLTKVLPAVPVPPPNVQVRNAPDQVTLERTLNGLGLTSLLQ
Ga0210259_105708501	3300030625	Soil	RHIPTTHLTKVLPAMPAPPPHVQVRNAPNQAAVEKTLNDLGLTSLLQ
Ga0210259_112787101	3300030625	Soil	RRPKAIPTTHLTKMLPAAPIPPPNVQIRNAPDQATVEKTLNELGLTSLLK
Ga0210282_102823061	3300030630	Soil	TMLTKMLPATPMPPPNVQVRNAPNQQTVEQTLKGLGLTSQFN
Ga0210282_103070521	3300030630	Soil	LTKFLPAVPMPPPNVQVRNAPNQATVEKTLNDLGLSALLQ
Ga0210282_104041011	3300030630	Soil	PTLLTKVLPQVPAPPPNVQVRNAPDQATVERTLQNLGFK
Ga0210279_103797721	3300030631	Soil	PVQPVPPPNVQIRNAPDQATVERTLNELGLTSLLH
Ga0265462_110963492	3300030738	Soil	MLPAIPAPPPNIQVRNAPDRATLERTLNGMGLTSMLQ
Ga0265462_113079951	3300030738	Soil	IPTTHLTKVLPAMPVPPPNVQVRNAPNQATVEQTLNDLGLTSLLR
Ga0265462_115750651	3300030738	Soil	TTHLTRMLPAVPAPPPNVQVRGAPSQYAVEQTLNNLGLTSRY
Ga0265462_120437861	3300030738	Soil	HYTKVLAAVPAPPPNVQVRNAPDQATVEKTLTELGLSSLLK
Ga0265462_121036661	3300030738	Soil	TTHLTRMLPAVPAPPPNVQVRGAPSQYAVEQTLNNLGLTSKRY
Ga0265462_121469491	3300030738	Soil	HLTKLLPAMPVPPPNVQVRNAPDQATVEQTLNDLGLTALLR
Ga0265462_122105811	3300030738	Soil	TTHLTKLLPAMPVPPPNVQVRNAPNQATLEQTLNDLGLTSLLR
Ga0265462_122330931	3300030738	Soil	PVPMPPPHVQVRNAPDQATVERTLNNLGLTSHYRN
Ga0265462_123884531	3300030738	Soil	PTTRLTKFLPAVPMPPPNVQVRNAPNQATVEQTLNDLGLTSLLQ
Ga0265462_124208981	3300030738	Soil	RPKQIPTTYLTKVLPAVPVPPPNVQVRGAPNQYAVEQTLNNLGLTSRY
Ga0265460_122186631	3300030740	Soil	PAQPVPPPNVQIRNAPDQATVERTLNELGLTSLLH
Ga0265459_128060401	3300030741	Soil	PPRPQQIPTTVVTKLLPPIRAPPPNVQVRNAPDRATVERTLNNLGLTSQ
Ga0265461_128254301	3300030743	Soil	TTLLTKVLPPIPVPPPNIQVRNAPDRATVERTLNSLGLTSQ
Ga0265461_133409231	3300030743	Soil	PKHVPTTHVTKVLPRIPVPPPNVHVRNAPNQAAVEYTLNNMGLTSKFQ
Ga0074043_100036161	3300030748	Soil	KVLPAVPAPPPNVQVRNAPNQAAVEQTLNNMGLTSRLNY
Ga0074043_101082751	3300030748	Soil	PRPKHVPTTLLTKMLPAVPVPPPNVQVRNAPNHQTLEQTLNNLGLTSL
Ga0074043_105856931	3300030748	Soil	PTTMLTRMLPAVPMPPPNVQIRNAPNQQTVEQTLNKLGLTSR
Ga0074043_112931592	3300030748	Soil	PQQIPTTHLTKVLPAIPVPPPNVHIRNAPNQAAVERTLNNLGLTSY
Ga0074043_115244491	3300030748	Soil	TKVLPAVPVPPPNVQVRNAPNRATVERTLNNMGLTSHYNQ
Ga0102768_16183751	3300030757	Soil	TTHLTKVLPAMPTPPPNVQVRNAPDYATLERTLNGLGLTASMFQ
Ga0075378_100951472	3300030779	Soil	PTTHLTKVLPAMPAPPPHVQVRNAPSQAAVEKTLNDLGLTSLLQ
Ga0075378_110465441	3300030779	Soil	KVLPPVPLPPPNVQVRNAPDQATVERTLHSLGLRSQ
Ga0102766_100046941	3300030789	Soil	HIPTTHLTKVLPPVPVPPPNVQVRNAPDHATVEQTLKNLGLTSMMR
Ga0102766_100741741	3300030789	Soil	TSCACSTKVLPAVPVPPPNVQVRNAPDRATVEKTLNDLGLSALLQ
Ga0074032_101167601	3300030800	Soil	TTHLTKMLPAIPVPPPNVQVRNAPDRATLERTLNGMGLTSLLQ
Ga0073999_100116261	3300030839	Soil	VPTTMLTKVLPAVPVPPPNVQVRNAPDHATVQRTLQNLGLTSQ
Ga0075388_116472941	3300030848	Soil	IPTTHLTKVLPAVPVPPPNVLVRGAAPDQATFERTLNGLGLTAKFE
Ga0102744_10663111	3300030866	Soil	TKVLPAVPVPPPNVQVRNAPSQAAVEQTLNNLGLTSLLR
Ga0102749_14741502	3300030867	Soil	HIPTTHLTKVLPAVPIPPPNVQVRNAPSQAAVEQTLNNLGLTSLVR
Ga0138300_13912371	3300030922	Soil	LLPAVPVPPPRVQVRNAPNQATVEQTLNELGLSSLLR
Ga0074001_100246981	3300030932	Soil	THLTKVLPAVPVPPPNVQIRNAPDQAMVEKTLNDLGLTSLLR
Ga0074039_113574871	3300030933	Soil	LTKVLPPVPAPPPNVQVRNAPNQAAVERTLNNLGLTSHYHN
Ga0075401_117003061	3300030935	Soil	PQQIPTTRLTRVLPAIPVPPPNVQIRNAPNQAAVERTLNGLGLTSY
Ga0075401_118267651	3300030935	Soil	PLPRHVPTTHFTRMLPAMPVPPPNVQVRGNPDHATVEQTLNSLGLSATL
Ga0138302_10697561	3300030937	Soil	TKLLPAVPVPPPNVQVRNAPDQAMVEKTLNDLGLTSLLL
Ga0138302_15087441	3300030937	Soil	PTTHLTKMLPAMPMPPPNVQVRNAPNRQTLEQTLNNLGLTAN
Ga0075379_100491642	3300030946	Soil	HLTKVLPAVPVPPPNVQVRNAPNQAAVEQTLNNLGLTSLLR
Ga0074031_18065561	3300030949	Soil	PRPKHVPTTHLTKMLPAMPMPPPNVQVRNAPNRQTLEQTLNNLGLTAN
Ga0075375_115167223	3300030971	Soil	CVNVPAPPPNVQVRNAPDQATVERTLKELGLSSFIS
Ga0068589_100229001	3300030979	Soil	HIPTTHLTKVLPAVPAPPPNVQVRNAPSQAAVEQTLNNLGLTSLVR
Ga0074027_100322401	3300030980	Soil	PQKVPTTLLTKVLPAVPMPPPNVQIRNAPDQATVERTLNNLGLTSR
Ga0074027_114031631	3300030980	Soil	PTTHLTKVLPAVPVPPPNVQVRGAPDRATVEKTLNGLGLTASRR
Ga0074040_112337791	3300030992	Soil	PAVPVPPPNVQVRNAPDQETVEQTLNKLGLSALLQ
Ga0074040_113345761	3300030992	Soil	PLPRHVPTTYLSRMLPAVPVPPPNVQVRGNPDQATVEQTLNSLGLSATL
Ga0074004_114492301	3300030996	Soil	PRPKHVPTTHLTKVLPRTPAPPPNVHVRNAPNQAAVEYTLNNMGLTSRFQ
Ga0073996_122041481	3300030998	Soil	HLTKVLPAVPAPPPYVQIRNAPDQATVERTLNNLGLTSR
Ga0074038_113187381	3300031008	Soil	PTTLLTKVLPPVPMPPPHVQVRNAPDQATVERTLKDLGLQSFISRYST
Ga0073998_114219871	3300031023	Soil	PKHVPTTMLTRMLPAVPMPPPNVQIRNAPNQQTVEQTLNKLGLTSR
Ga0074041_112479441	3300031034	Soil	AVPAPPPNVQVRNAPNQAAVEQTLNNMGLTSRLNY
Ga0074026_111596681	3300031035	Soil	LTKVLPPVPAPPPNVQVRNAPDQATVERTLHSLGLRSH
Ga0170822_125963991	3300031122	Forest Soil	PRPQHVPTTMLTKVLPPVPLPPPNVQVRNAPDQATVERTLHSLGLRSQ
Ga0170822_165505961	3300031122	Forest Soil	PRHIPTTYLTKMLPAVPAPPPNVQVRGAPSQYAVEQTLNNLGLTSKRY
Ga0315837_10386031	3300031136	Plant Litter	THLTKVLPAIPVPPPNVQVRNAPNQATVEQTLNDLGLTALLR
Ga0170824_1004828712	3300031231	Forest Soil	MLPAIPAPPPNVQVRNAPDRATLERTLNGMGLTSMLQ
Ga0170824_1126799511	3300031231	Forest Soil	PRPKHVPTTLLTKVLPPVPAPPPHVQVRNAPDQATVERTLNNLGLTTHYRN
Ga0170819_102846951	3300031469	Forest Soil	EAPPQRPRHIPTTHLTKVLPAVPVPPPNVQVRNAPSQAAVEQTLNKLGLSSLVR
Ga0170818_1147685531	3300031474	Forest Soil	PQHVPTTFLTKVLPPVPAPPPNVQIRNAPDRATVERTLQSLGLLRQ
Ga0315742_122795431	3300032756	Forest Soil	HIPTTMLTKVLPPVPAPPPNVQVRNAPNQAAVERTLNNLGLTSHYHN
Ga0315742_123317661	3300032756	Forest Soil	PTTHLTKVLPAMPVPPPNVQVRNAPNQATVEQTLHQLGLSSFLQ
Ga0315742_128318631	3300032756	Forest Soil	PAVPVPPPNVQVRNAPNQATVEKTLNELGLSSLLK
Ga0314768_12877691	3300033523	Switchgrass Phyllosphere	VLPAIPVPPPNVQVRNAPDAATLEKTLNGLGLTSLMQ

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087439

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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