Metagenome / Metatranscriptome Family F087500

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087500
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	42 residues
Representative Sequence	MTSAHALGHFLRTLPASAAATFLALFPIVDPFGGIPIFFTM
Number of Associated Samples	93
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.00 %
% of genes near scaffold ends (potentially truncated)	99.09 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (94.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.273 % of family members)
Environment Ontology (ENVO)	Unclassified (20.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.43% β-sheet: 0.00% Coil/Unstructured: 69.57%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04253	TFR_dimer	50.91
PF01850	PIN	20.00
PF04389	Peptidase_M28	19.09
PF02604	PhdYeFM_antitox	1.82
PF08241	Methyltransf_11	0.91
PF03279	Lip_A_acyltrans	0.91
PF13607	Succ_CoA_lig	0.91
PF00171	Aldedh	0.91
PF01914	MarC	0.91
PF16925	TetR_C_13	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.82
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.82
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.91
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.91
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.91
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.91
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.91
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.55 %
Unclassified	root	N/A	5.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.55 %
Unclassified	root	N/A	5.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.55 %
Unclassified	root	N/A	5.45 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	60.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %
Unclassified	root	N/A	5.45 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	56.36 %
Unclassified	root	N/A	5.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.36 %
Unclassified	root	N/A	5.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.82 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.36 %
Unclassified	root	N/A	5.45 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10003244	All Organisms → cellular organisms → Bacteria → Proteobacteria	4752	Open in IMG/M
3300001593\|JGI12635J15846_10327602	Not Available	948	Open in IMG/M
3300002245\|JGIcombinedJ26739_100304318	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300004080\|Ga0062385_10713351	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300004092\|Ga0062389_100572490	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300005434\|Ga0070709_10502261	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300005435\|Ga0070714_100601134	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300005568\|Ga0066703_10866198	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005602\|Ga0070762_10149716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1395	Open in IMG/M
3300005602\|Ga0070762_10268281	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300006162\|Ga0075030_100023976	All Organisms → cellular organisms → Bacteria	5236	Open in IMG/M
3300006162\|Ga0075030_100037673	All Organisms → cellular organisms → Bacteria → Proteobacteria	4097	Open in IMG/M
3300006176\|Ga0070765_100414394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1259	Open in IMG/M
3300006893\|Ga0073928_10376511	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300009143\|Ga0099792_10906850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300009645\|Ga0116106_1047611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1436	Open in IMG/M
3300009839\|Ga0116223_10009262	All Organisms → cellular organisms → Bacteria	7667	Open in IMG/M
3300009839\|Ga0116223_10528847	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300009839\|Ga0116223_10557937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300010043\|Ga0126380_12030857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300010343\|Ga0074044_11026973	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300010360\|Ga0126372_12398597	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300010361\|Ga0126378_12089447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300011270\|Ga0137391_10153449	All Organisms → cellular organisms → Bacteria	2007	Open in IMG/M
3300012683\|Ga0137398_10251252	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1178	Open in IMG/M
3300012927\|Ga0137416_11307635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300014501\|Ga0182024_10327381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2012	Open in IMG/M
3300015373\|Ga0132257_102530764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300017823\|Ga0187818_10179257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300017928\|Ga0187806_1244555	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300017933\|Ga0187801_10016533	All Organisms → cellular organisms → Bacteria → Acidobacteria	2468	Open in IMG/M
3300017942\|Ga0187808_10402643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300017943\|Ga0187819_10347260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300017943\|Ga0187819_10834428	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300017946\|Ga0187879_10190914	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300017970\|Ga0187783_10940945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300017972\|Ga0187781_10025877	All Organisms → cellular organisms → Bacteria	4062	Open in IMG/M
3300018062\|Ga0187784_10530484	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300019890\|Ga0193728_1342794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300020580\|Ga0210403_10561429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300020582\|Ga0210395_10585009	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300020582\|Ga0210395_10828200	Not Available	689	Open in IMG/M
3300021046\|Ga0215015_10004250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300021181\|Ga0210388_10617778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	947	Open in IMG/M
3300021402\|Ga0210385_10189769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1490	Open in IMG/M
3300021404\|Ga0210389_10451623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1011	Open in IMG/M
3300021404\|Ga0210389_10598406	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300021406\|Ga0210386_10380867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1215	Open in IMG/M
3300021432\|Ga0210384_11344464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300021432\|Ga0210384_11768445	Not Available	524	Open in IMG/M
3300021433\|Ga0210391_10964643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300021474\|Ga0210390_10550040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	970	Open in IMG/M
3300021474\|Ga0210390_11273971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300021475\|Ga0210392_11248885	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300021478\|Ga0210402_11954604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300021560\|Ga0126371_11701564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300021858\|Ga0213852_1118964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300021860\|Ga0213851_1254403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300021860\|Ga0213851_1475030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300021861\|Ga0213853_10246893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300021861\|Ga0213853_11223047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300022557\|Ga0212123_10631440	Not Available	671	Open in IMG/M
3300022728\|Ga0224566_101514	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300025898\|Ga0207692_10741265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300025905\|Ga0207685_10041482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1722	Open in IMG/M
3300025939\|Ga0207665_11436554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300026515\|Ga0257158_1108940	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300026557\|Ga0179587_10529743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300027603\|Ga0209331_1131347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300027605\|Ga0209329_1152726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300027889\|Ga0209380_10670403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300027894\|Ga0209068_10069567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1816	Open in IMG/M
3300028036\|Ga0265355_1010533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300028552\|Ga0302149_1102864	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300028759\|Ga0302224_10289978	Not Available	656	Open in IMG/M
3300028792\|Ga0307504_10407540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300028798\|Ga0302222_10159153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300028801\|Ga0302226_10057513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1823	Open in IMG/M
3300029636\|Ga0222749_10086818	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300029883\|Ga0311327_10238454	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300029993\|Ga0302304_10394170	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300030007\|Ga0311338_10632206	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300030007\|Ga0311338_10986154	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300030490\|Ga0302184_10143470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1041	Open in IMG/M
3300030503\|Ga0311370_10159490	All Organisms → cellular organisms → Bacteria	3096	Open in IMG/M
3300030503\|Ga0311370_10393829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1744	Open in IMG/M
3300030524\|Ga0311357_11114770	All Organisms → cellular organisms → Bacteria → Proteobacteria	687	Open in IMG/M
3300030659\|Ga0316363_10285643	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300030687\|Ga0302309_10356589	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
3300030814\|Ga0265741_110455	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300031234\|Ga0302325_10575811	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1668	Open in IMG/M
3300031234\|Ga0302325_10864919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1262	Open in IMG/M
3300031249\|Ga0265339_10479622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300031474\|Ga0170818_110964494	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300031708\|Ga0310686_109643066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300031708\|Ga0310686_119331084	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031712\|Ga0265342_10028799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3455	Open in IMG/M
3300031720\|Ga0307469_10824136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300031720\|Ga0307469_11406583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300031754\|Ga0307475_10459602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300031823\|Ga0307478_11774884	Not Available	507	Open in IMG/M
3300031910\|Ga0306923_10339365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1714	Open in IMG/M
3300031910\|Ga0306923_11703519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300031912\|Ga0306921_10927075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	987	Open in IMG/M
3300031941\|Ga0310912_10616983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300032001\|Ga0306922_10367169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1543	Open in IMG/M
3300032770\|Ga0335085_10812343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300032783\|Ga0335079_10289222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1791	Open in IMG/M
3300033158\|Ga0335077_12191058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300033289\|Ga0310914_10461244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1150	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.36%
Host-Associated	Host-Associated	3.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.18%
Aquatic	Environmental → Aquatic	18.18%
Plants	Host-Associated → Plants	3.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.64%
Freshwater	Environmental → Aquatic → Freshwater	13.64%
Peat	Environmental → Terrestrial → Peat	13.64%
Sediment	Environmental → Aquatic → Sediment	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.73%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.82%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.64%
Loam	Environmental → Terrestrial → Soil → Loam	12.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.73%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.36%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.45%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.73%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.27%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.45%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.64%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.73%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.82%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.82%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022728	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028552	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029993	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300030814	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100032447	3300001471	Forest Soil	MTSAHALGSFLRTLPASAATTFLALFPIVDPFGGVPIFFTLTSS
JGI12635J15846_103276024	3300001593	Forest Soil	MTSAHALGHFLRTLPDSAVATFLALFPIVDPFGGIPIFFTMTS
JGIcombinedJ26739_1003043181	3300002245	Forest Soil	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGVPIFF
Ga0062385_107133513	3300004080	Bog Forest Soil	MTSAHALGTFLRTLPASAAETFLALFPIVDPFGGIPIFFSMTSTWTP
Ga0062389_1005724903	3300004092	Bog Forest Soil	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFTMTSSWTAQ
Ga0070709_105022611	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MMTSAHALGQFLRTLPASAAATFLALFPIVDPFGGIPVFFTMTSSWTAQD
Ga0070714_1006011342	3300005435	Agricultural Soil	MDTTSMTSAHALGQFLRTLSGSAVATFLALFPIVDPFGGIPV
Ga0066703_108661982	3300005568	Soil	MTSANALGHFLRTLSGSAVATFLALFPIVDPFGGIPVFFTMTS
Ga0070762_101497163	3300005602	Soil	LTNHMTSAHALGTFLRTLPASAVATFLALFPIVDPFGG
Ga0070762_102682811	3300005602	Soil	MTSAHALGTFLRTLPASAAATFLALFPIVDPFGGIPIFFSMTSTWTP
Ga0075030_1000239765	3300006162	Watersheds	MASAHALGMFLKTLPASAAATFLALFPIVDPFGGIPIFFTMTSSWTP
Ga0075030_1000376737	3300006162	Watersheds	MTSAHAFGQILRTLPSSAAATFLALFPIVDPFGGVPIFFTMTSSW
Ga0070765_1004143942	3300006176	Soil	MTPTTHALGQFLRTLPHSAAATFLALFPIVDPFGGIP
Ga0073928_103765111	3300006893	Iron-Sulfur Acid Spring	MTSAHALGQFLRTLPASAAATFLALFPIVDPFGGIPIFFTMTSSWTAR
Ga0099792_109068501	3300009143	Vadose Zone Soil	MNATHALAQFLRTLPHSAAATFLALFPIVDPFGGVPI
Ga0116106_10476111	3300009645	Peatland	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIF
Ga0116223_1000926210	3300009839	Peatlands Soil	MNAAHALGHFLRTLPNSAVATFLALFPIVDPFGGVPIFFTMTS
Ga0116223_105288472	3300009839	Peatlands Soil	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFTMTSAWTPQ
Ga0116223_105579372	3300009839	Peatlands Soil	MNSAHVLGHFLRTLPASAVATFLALFPIVDPPGGVPIFFTMTT
Ga0126380_120308571	3300010043	Tropical Forest Soil	MGSHTLPHFLRDLPSAAVATFLALFPIVNPFGGVPLFFSLTSS
Ga0074044_110269731	3300010343	Bog Forest Soil	MNTAHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFAMT
Ga0126372_123985971	3300010360	Tropical Forest Soil	MKAANALQHLLLTLPAAATATFLALFPIVDPPGGVPIFFTMTSSW
Ga0126378_120894472	3300010361	Tropical Forest Soil	MTAAHALGHFLRTLPASAAATFLALFPIVDPFGGIPVFFTM
Ga0137391_101534491	3300011270	Vadose Zone Soil	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGI
Ga0137398_102512522	3300012683	Vadose Zone Soil	MTSAHALGQLLRTLPVSAAATFLALFPIVDPFGGV
Ga0137416_113076351	3300012927	Vadose Zone Soil	MTSAHALGQFLRTLPASAAATFLALFPIVDPFGGVPIFF
Ga0182024_103273811	3300014501	Permafrost	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFSMT
Ga0132257_1025307641	3300015373	Arabidopsis Rhizosphere	MHSAHVLGQILRTLPASAAATFLALFPIVDPFGGVPIFFAMTSEW
Ga0187818_101792572	3300017823	Freshwater Sediment	MTSAHALGHFLRTLPASAAATFLALFPIVDPFGGIPIFFTM
Ga0187806_12445551	3300017928	Freshwater Sediment	MTSTHALGHFLRTLPASAAATFLALFPIVDPFGGIPIF
Ga0187801_100165332	3300017933	Freshwater Sediment	MTSAHALGHFLRTLPASAAATFLALFPIVDPFGGIPIFFTMTSS
Ga0187808_104026431	3300017942	Freshwater Sediment	MHSAHALGQFLRTLPHSALATFLALFPIVDPPGGIPIFYGMTSS
Ga0187819_103472601	3300017943	Freshwater Sediment	MNTTHALGHFLRTLPQSAAATFLALFPIVDPFGGVPIFFTMTSSWTAQE
Ga0187819_108344281	3300017943	Freshwater Sediment	MNSAHVLGQFLRTLPASAAATFLALFPIVDPFGGI
Ga0187879_101909144	3300017946	Peatland	MNTAHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFAMTSSWTPQNRR
Ga0187783_109409452	3300017970	Tropical Peatland	MNSAHVFGQFLRTLPASAAATYLALFPIVDPFGGVPIFFSMTSDWTARD
Ga0187781_100258773	3300017972	Tropical Peatland	MTSAHALESFLRTLPASAAATFLALFPIVDPLGGIPIFYAMTSG
Ga0187784_105304841	3300018062	Tropical Peatland	MTSAHVLGQFLRTLPASALATFLALFPIVDPFGGIP
Ga0193728_13427941	3300019890	Soil	MTSAHALGQLFRTLPVSAAATFLALFPIVDPFGGVP
Ga0210403_105614292	3300020580	Soil	MTPTTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPI
Ga0210395_105850092	3300020582	Soil	MTSAHALGTFLRTLPASAAATFLALFPIVDPFGGIPIFF
Ga0210395_108282001	3300020582	Soil	MTSAHGLGQFLRTLPASAAATFLALFPIVDPFGGIPNFFSM
Ga0215015_100042501	3300021046	Soil	MTSAHALGQLLRTLPVSAAATFLALFPIVDPFGGVPIFFGLTSSWPAV
Ga0210388_106177783	3300021181	Soil	MTPTPALGEFLRTLPASAAATFLALFPIVDPFGGVPIFFSMTS
Ga0210385_101897692	3300021402	Soil	MNHAHALAQFLRTLPHSAAATFLALFPIVDPPGGVPIFFSM
Ga0210389_104516231	3300021404	Soil	MTSAHALGQFLRTLSGSAVATFLALFPIVDPFGGIP
Ga0210389_105984061	3300021404	Soil	MNSAHVLGHILRSLPASAAATFLALFPIVDPFGGIP
Ga0210386_103808672	3300021406	Soil	MNTAHALGHFLRTLPNSAAATFLALFPIVDPFGGV
Ga0210384_113444641	3300021432	Soil	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFSMTSS
Ga0210384_117684451	3300021432	Soil	MTSAHVLGDFLRTLPRSAAATFLALFPIVDPFGGVPIFFSMTST
Ga0210391_109646431	3300021433	Soil	MNSAHVLGQFLRTLPASAAATFLALFPIVDPFGGIP
Ga0210390_105500402	3300021474	Soil	MTPTTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFSMTSSW
Ga0210390_112739711	3300021474	Soil	MHTTHTLGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFSMTSSWTAHD
Ga0210392_112488851	3300021475	Soil	MNTAHALGVFLRSLPHSAVATFLALFPIVDPPGGIPIFFAMTSSWTEQ
Ga0210402_119546041	3300021478	Soil	MTSAHVLGDFLRTLPRSAAATFLALFPIVDPFGGVPIF
Ga0126371_117015642	3300021560	Tropical Forest Soil	MTSGHGLGHFFLTLPASAAATFLALFPIVDPFGGIPVFFTMTS
Ga0213852_11189641	3300021858	Watersheds	MTSTHALGHFLRTLPASAVATFLALFPIVDPFGGIPIFFTMTSGWTARE
Ga0213851_12544031	3300021860	Watersheds	MASAHALGQFLRTLPDSAAATFLALFPIVDPFGGIPIFFTMTS
Ga0213851_14750302	3300021860	Watersheds	MTPAHALGHFLRTLSGSAVATFLALFPIVDPFGGIPVFFTISSSGTPRDRYRTALK
Ga0213853_102468932	3300021861	Watersheds	MTSAHALGHFLRTLPASAAATFLALFPIVDPFGGIPIFFTMTSTWTAGER
Ga0213853_112230471	3300021861	Watersheds	MTSAHALGHFLRTLSGSAIATFLALFPIVDPFGGIPVFFTMTT
Ga0212123_106314403	3300022557	Iron-Sulfur Acid Spring	MTSAHALGQFLRTLPSSAAATFLALFPIVDPFGGIPI
Ga0224566_1015144	3300022728	Plant Litter	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFF
Ga0207692_107412651	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSHVLGHLLHTLPASAAATFLALFPIVDPFGGIP
Ga0207685_100414821	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSHVLGHLLHTLPASAAATFLALFPIVDPFGGIPIFFTMTSKW
Ga0207665_114365542	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTYALGQILRTLPASAAATFLALFPIVDPFGGIPVFFTM
Ga0257158_11089401	3300026515	Soil	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFTMTAS
Ga0179587_105297431	3300026557	Vadose Zone Soil	MTSAHALGQFLRTLPASAAATFLALFPIVDPFGGVPIFFSLTS
Ga0209331_11313471	3300027603	Forest Soil	MTSAHALGQFLRTLPASAAATFLALFPIVDPFGGVPIF
Ga0209329_11527261	3300027605	Forest Soil	MNPTHALGQVLRTLPHSAAATFLALFPIVDPFGGIP
Ga0209380_106704031	3300027889	Soil	MTPTTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFSMTSSWTVQE
Ga0209068_100695671	3300027894	Watersheds	LIAPVHAVGQMLRTLPSAAAATFLALFPIVNPFGGVPLF
Ga0265355_10105332	3300028036	Rhizosphere	MDATHALGQFLRTLPHSAAATFLALFPIVDPFGGVPIFFSMT
Ga0302149_11028643	3300028552	Bog	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFT
Ga0302224_102899782	3300028759	Palsa	MTSAHVFGEFLRTLPASAAATFLALFPIVDPFGGVPIFFSMTSTW
Ga0307504_104075401	3300028792	Soil	MTSAHVLGHFLRTLSGSAVATFLALFPIVDPFGGIPVFFTMTSSWT
Ga0302222_101591532	3300028798	Palsa	MTSTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFTMTSSWTPQD
Ga0302226_100575131	3300028801	Palsa	MHPTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFTMTASWTA
Ga0222749_100868181	3300029636	Soil	MNTAHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFSMTSTWSA
Ga0311327_102384544	3300029883	Bog	MNTTHALGQFLRTLPQSAAATFLALFPIVDPFGGIPI
Ga0302304_103941701	3300029993	Palsa	MTSAHVLGQFLRTLPASAAATFLALFPIVDPFGGIPIFFTMTASWSPRD
Ga0311338_106322062	3300030007	Palsa	MTSADTLGHFLRTLPASAATTFLALFPIVDPFGGIPIFF
Ga0311338_109861541	3300030007	Palsa	MTSAHALGEFLRTLPRSAAATFLALFPIVDPLGGVPIFF
Ga0302184_101434703	3300030490	Palsa	MHPTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFTMTASWT
Ga0311370_101594904	3300030503	Palsa	MTATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFF
Ga0311370_103938292	3300030503	Palsa	MTSTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFF
Ga0311357_111147703	3300030524	Palsa	MTYAHALGHFLRTLPASAVATFLALFPIVDPFGGIPI
Ga0316363_102856431	3300030659	Peatlands Soil	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFTM
Ga0302309_103565891	3300030687	Palsa	MNPTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFSMTSSW
Ga0265741_1104551	3300030814	Soil	MTSAHALGTFLRTLPASAAATFLALFPIVDPFGGIPIF
Ga0302325_105758112	3300031234	Palsa	VTSTHALGQFLRTLPHSAAATFLALFPIVDPFGGVPIFFSM
Ga0302325_108649193	3300031234	Palsa	MTSSHALQPFLHDLPSAAAATFLALFPIVNPFGGVPFFFSL
Ga0265339_104796221	3300031249	Rhizosphere	VTYAHALGQFLRTLPASAAATFLALFPIVDPFGGIPI
Ga0170818_1109644941	3300031474	Forest Soil	MTATHALGEFLRTLPRSALATFLALFPIVDPFGGVP
Ga0310686_1096430662	3300031708	Soil	MTPTTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFS
Ga0310686_1193310842	3300031708	Soil	MNATHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFSMTSSWTAQD
Ga0265342_100287993	3300031712	Rhizosphere	MGPGHAFGEFLRTLPASAAATFLALFPIVDPFGGIPIFFTMT
Ga0307469_108241361	3300031720	Hardwood Forest Soil	MIPAHAHALGQFLRTLPESAVATFLALFPIVDPFGGVPV
Ga0307469_114065831	3300031720	Hardwood Forest Soil	MTSSHVLGHLLHTLPASAAAIFLALFPIVDPFGGIPIFYTMTSQWS
Ga0307475_104596022	3300031754	Hardwood Forest Soil	MTSTHALGQFLRTLPHSAAATFLALFPIVDPFGGIPIFFTMTSSW
Ga0307478_117748841	3300031823	Hardwood Forest Soil	MNTAQALGHFLRTLPHSAAATFLALFPIVDPPGGIPIF
Ga0306923_103393651	3300031910	Soil	MTAAHALGHFLRTLPASAAATFLALFPIVDPFGGIPVFFTMTSSWTP
Ga0306923_117035192	3300031910	Soil	MTSAHALGQFLRTLPASAAATFLALFPIVDPFGGVPV
Ga0306921_109270751	3300031912	Soil	MTSAHALGQFLRTLPASAAATFLALFPIVDPFGGVPVFFS
Ga0310912_106169832	3300031941	Soil	MTAAHALGHFLRTLPASAAATFLALFPIVDPFGGIP
Ga0306922_103671691	3300032001	Soil	MTSAHALGQFLRTLPASAAATFLALFPIVDPFGGVPVFFSMTSRWDP
Ga0335085_108123431	3300032770	Soil	MTSAHALGQFLRTLPASAAATFLALFPIVDPFGGIPIF
Ga0335079_102892221	3300032783	Soil	MNAAHALGHFLRTLPASAAATFLALFPIVDPFGGVPIFFTMTSGWTRRDRYRTA
Ga0335077_121910581	3300033158	Soil	MNSAHALGHFLRTLPASAAATFLALFPIVDPFGGIPIFFSMTSSWTAR
Ga0310914_104612441	3300033289	Soil	MTAAHALGHFLRTLPASAAATFLALFPIVDPFGGIPVFFTMTSSWTPRDRY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087500

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences