Metagenome / Metatranscriptome Family F087535

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087535
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	54 residues
Representative Sequence	VAKFQDHQRRAAECLRLAHEATDKTNKALLIEMAQTWARLAEQDKARSEDEKPE
Number of Associated Samples	81
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.00 %
% of genes near scaffold ends (potentially truncated)	41.82 %
% of genes from short scaffolds (< 2000 bps)	80.91 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.727 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.546 % of family members)
Environment Ontology (ENVO)	Unclassified (37.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.88% β-sheet: 0.00% Coil/Unstructured: 45.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.1: Ferritin	d2fzfa1	2fzf	0.94207
a.25.1.1: Ferritin	d1nfva_	1nfv	0.93916
a.25.1.1: Ferritin	d1j30a_	1j30	0.93282
a.25.1.9: Rv2844-like	d2ib0a1	2ib0	0.93271
a.25.1.1: Ferritin	d3pwfa1	3pwf	0.92773

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01471	PG_binding_1	20.91
PF13473	Cupredoxin_1	6.36
PF01145	Band_7	4.55
PF03734	YkuD	4.55
PF00005	ABC_tran	2.73
PF13458	Peripla_BP_6	0.91
PF05147	LANC_like	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	4.55
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	4.55
COG4403	Lantibiotic modifying enzyme	Defense mechanisms [V]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.91 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	48.18 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	28.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11.82 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.82 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	2.73 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.82 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	2.73 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.82 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	2.73 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.82 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10057113	Not Available	1005	Open in IMG/M
3300003505\|JGIcombinedJ51221_10120303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1052	Open in IMG/M
3300004633\|Ga0066395_10066629	Not Available	1645	Open in IMG/M
3300005332\|Ga0066388_100030727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5038	Open in IMG/M
3300005332\|Ga0066388_100085337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3553	Open in IMG/M
3300005332\|Ga0066388_100235003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2467	Open in IMG/M
3300005332\|Ga0066388_101195031	All Organisms → cellular organisms → Bacteria → Proteobacteria	1299	Open in IMG/M
3300005332\|Ga0066388_102208503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	993	Open in IMG/M
3300005332\|Ga0066388_103728952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	778	Open in IMG/M
3300005332\|Ga0066388_105019994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	672	Open in IMG/M
3300005363\|Ga0008090_15792267	Not Available	1213	Open in IMG/M
3300005434\|Ga0070709_11444199	Not Available	558	Open in IMG/M
3300005436\|Ga0070713_100017025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5483	Open in IMG/M
3300005437\|Ga0070710_10294660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1057	Open in IMG/M
3300005534\|Ga0070735_10034200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3499	Open in IMG/M
3300005537\|Ga0070730_10152853	Not Available	1565	Open in IMG/M
3300005560\|Ga0066670_10130925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1445	Open in IMG/M
3300005764\|Ga0066903_107395429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	567	Open in IMG/M
3300005764\|Ga0066903_108467459	Not Available	525	Open in IMG/M
3300006028\|Ga0070717_11031499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M
3300006031\|Ga0066651_10242701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	955	Open in IMG/M
3300006052\|Ga0075029_100475810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	822	Open in IMG/M
3300006175\|Ga0070712_101541054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300006755\|Ga0079222_10053009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1897	Open in IMG/M
3300006903\|Ga0075426_10630909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	801	Open in IMG/M
3300007076\|Ga0075435_100717304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	869	Open in IMG/M
3300010046\|Ga0126384_10039186	All Organisms → cellular organisms → Bacteria → Proteobacteria	3200	Open in IMG/M
3300010046\|Ga0126384_12318901	Not Available	518	Open in IMG/M
3300010048\|Ga0126373_10399535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1398	Open in IMG/M
3300010048\|Ga0126373_11952348	Not Available	650	Open in IMG/M
3300010048\|Ga0126373_13232862	Not Available	507	Open in IMG/M
3300010154\|Ga0127503_10842323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300010359\|Ga0126376_12741429	Not Available	542	Open in IMG/M
3300010360\|Ga0126372_10083910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2329	Open in IMG/M
3300010360\|Ga0126372_10508798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133	Open in IMG/M
3300010361\|Ga0126378_10358513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1568	Open in IMG/M
3300010366\|Ga0126379_10636234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1156	Open in IMG/M
3300010366\|Ga0126379_11535372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	771	Open in IMG/M
3300010376\|Ga0126381_100025018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7051	Open in IMG/M
3300010376\|Ga0126381_102445405	Not Available	749	Open in IMG/M
3300010376\|Ga0126381_104074201	Not Available	568	Open in IMG/M
3300010396\|Ga0134126_12741178	Not Available	535	Open in IMG/M
3300010398\|Ga0126383_10000215	All Organisms → cellular organisms → Bacteria → Proteobacteria	29920	Open in IMG/M
3300012971\|Ga0126369_11016422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	917	Open in IMG/M
3300016270\|Ga0182036_10385729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1088	Open in IMG/M
3300016270\|Ga0182036_10412538	Not Available	1055	Open in IMG/M
3300016270\|Ga0182036_10861266	Not Available	741	Open in IMG/M
3300016294\|Ga0182041_10008068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5859	Open in IMG/M
3300016357\|Ga0182032_10086688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2169	Open in IMG/M
3300016357\|Ga0182032_10130223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1830	Open in IMG/M
3300016357\|Ga0182032_11388895	Not Available	608	Open in IMG/M
3300016357\|Ga0182032_11787512	Not Available	537	Open in IMG/M
3300016404\|Ga0182037_11065290	Not Available	706	Open in IMG/M
3300017924\|Ga0187820_1153769	Not Available	694	Open in IMG/M
3300017930\|Ga0187825_10112735	Not Available	946	Open in IMG/M
3300017936\|Ga0187821_10008407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3498	Open in IMG/M
3300017974\|Ga0187777_10069773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2277	Open in IMG/M
3300017974\|Ga0187777_10612583	Not Available	768	Open in IMG/M
3300017974\|Ga0187777_10657805	Not Available	741	Open in IMG/M
3300018433\|Ga0066667_10050572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2506	Open in IMG/M
3300018482\|Ga0066669_10027159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3318	Open in IMG/M
3300020150\|Ga0187768_1029272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1197	Open in IMG/M
3300020579\|Ga0210407_10745120	Not Available	758	Open in IMG/M
3300020580\|Ga0210403_10285381	Not Available	1353	Open in IMG/M
3300020581\|Ga0210399_10462687	Not Available	1056	Open in IMG/M
3300021560\|Ga0126371_11827522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728	Open in IMG/M
3300021560\|Ga0126371_13612019	Not Available	522	Open in IMG/M
3300025928\|Ga0207700_10024090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4207	Open in IMG/M
3300025929\|Ga0207664_11908957	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300026895\|Ga0207758_1013036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	829	Open in IMG/M
3300026990\|Ga0207824_1005692	Not Available	1443	Open in IMG/M
3300027010\|Ga0207839_1005909	Not Available	1514	Open in IMG/M
3300027039\|Ga0207855_1041767	Not Available	620	Open in IMG/M
3300027043\|Ga0207800_1010512	Not Available	1669	Open in IMG/M
3300027787\|Ga0209074_10335718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300027986\|Ga0209168_10532620	Not Available	565	Open in IMG/M
3300030916\|Ga0075386_11719570	Not Available	562	Open in IMG/M
3300031057\|Ga0170834_108470230	Not Available	1543	Open in IMG/M
3300031543\|Ga0318516_10005453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5789	Open in IMG/M
3300031543\|Ga0318516_10175534	Not Available	1234	Open in IMG/M
3300031561\|Ga0318528_10700313	Not Available	542	Open in IMG/M
3300031564\|Ga0318573_10396120	Not Available	742	Open in IMG/M
3300031573\|Ga0310915_10233439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1292	Open in IMG/M
3300031573\|Ga0310915_10271890	Not Available	1195	Open in IMG/M
3300031679\|Ga0318561_10005374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5191	Open in IMG/M
3300031713\|Ga0318496_10502182	Not Available	671	Open in IMG/M
3300031716\|Ga0310813_10714038	Not Available	896	Open in IMG/M
3300031744\|Ga0306918_10475478	Not Available	977	Open in IMG/M
3300031751\|Ga0318494_10016649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3582	Open in IMG/M
3300031753\|Ga0307477_10105908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1956	Open in IMG/M
3300031770\|Ga0318521_10578280	Not Available	678	Open in IMG/M
3300031777\|Ga0318543_10375836	Not Available	637	Open in IMG/M
3300031781\|Ga0318547_10000681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11215	Open in IMG/M
3300031781\|Ga0318547_10775854	Not Available	597	Open in IMG/M
3300031792\|Ga0318529_10206423	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300031845\|Ga0318511_10005796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3883	Open in IMG/M
3300031845\|Ga0318511_10447018	Not Available	595	Open in IMG/M
3300031890\|Ga0306925_11087235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	809	Open in IMG/M
3300031890\|Ga0306925_11689749	Not Available	611	Open in IMG/M
3300031897\|Ga0318520_10737412	Not Available	616	Open in IMG/M
3300031910\|Ga0306923_11540983	Not Available	693	Open in IMG/M
3300031910\|Ga0306923_12145848	Not Available	562	Open in IMG/M
3300031945\|Ga0310913_10437628	Not Available	928	Open in IMG/M
3300031945\|Ga0310913_10923253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	613	Open in IMG/M
3300031946\|Ga0310910_10552073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	914	Open in IMG/M
3300032064\|Ga0318510_10399553	Not Available	585	Open in IMG/M
3300032065\|Ga0318513_10584284	Not Available	547	Open in IMG/M
3300032091\|Ga0318577_10106527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1315	Open in IMG/M
3300032180\|Ga0307471_102516054	Not Available	651	Open in IMG/M
3300032261\|Ga0306920_102436213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	721	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.64%
Aquatic	Environmental → Aquatic	4.55%
Plants	Host-Associated → Plants	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.64%
Freshwater	Environmental → Aquatic → Freshwater	3.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.09%
Loam	Environmental → Terrestrial → Soil → Loam	20.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.64%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.64%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.73%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300026990	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)	Environmental	Open in IMG/M
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027043	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100571132	3300000597	Forest Soil	VPKLEDHQRRAAECLRLAREAADKTNKALLIEMAQTWARLAEQERHKQSEIDGE*
JGIcombinedJ51221_101203032	3300003505	Forest Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDQARSEDEKPE*
Ga0066395_100666292	3300004633	Tropical Forest Soil	VTKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAKQDKVKSEDEKPD*
Ga0066388_1000307274	3300005332	Tropical Forest Soil	VLKFQDHQRRAAECLRLAREATDKTNKALLTEMAQTWARLAEQDKARSEDEKPE*
Ga0066388_1000853372	3300005332	Tropical Forest Soil	VTRFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKAKSEDEKPQ*
Ga0066388_1002350033	3300005332	Tropical Forest Soil	VARFEDHQRRAAECLRLAHDAADKTNKALLIEMAQTWARLAEQERVKSQDETLEKLSW*
Ga0066388_1011950313	3300005332	Tropical Forest Soil	VTKFQDHQRRAAECLRLAREATDRTNKALLIEMAQTWAKLAEQDKAKSEDEKPQ*
Ga0066388_1022085031	3300005332	Tropical Forest Soil	VPKLEDHKRRAAECLRLAREAADKTNKALLIEMAQTWARLAEQERHKQSDTDGQ*
Ga0066388_1037289522	3300005332	Tropical Forest Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKARGEDEKPD*
Ga0066388_1050199941	3300005332	Tropical Forest Soil	VTKFHDHRRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVKSEDEKPD*
Ga0008090_157922673	3300005363	Tropical Rainforest Soil	VAKLQDHQRRAAECLRLAREATDKTNKVLLIEMAQTWAKLAEQDKAKSEDEKPQ*
Ga0070709_114441992	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VRVAALREGSVPRFQDHQRRAAECLRLAHEASDKTNKALLIEMAQTWAKLADQERARAEDEKSS*
Ga0070713_1000170253	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKARGDDEKPE*
Ga0070710_102946602	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VPKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQDKARSEDEKPE*
Ga0070735_100342002	3300005534	Surface Soil	VAKIDDHQRRAAECLRLAREAVDKTNRALLVEMAQTWAKLADQEKMRAVEQKSE*
Ga0070730_101528534	3300005537	Surface Soil	VARFQDHQRRAAECLRLAHEATDKTNKALLIEMAQTWAKLAEQEKARSEEEKSK*
Ga0066670_101309252	3300005560	Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLLEMAQTWAKLAEQEKARSDDKTE*
Ga0066903_1073954291	3300005764	Tropical Forest Soil	PVPKIEDHQRRAAECLRLAREAADKTNKALLIEMAQTWARLAEQERHKHSDADAE*
Ga0066903_1084674591	3300005764	Tropical Forest Soil	VARFQDHQRRAAECLRLAHEATDKTNKALLIEMAQTWAKLADQEKARAEDENSK*
Ga0070717_110314991	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KFQDHQRRAAECLRLAHEASDKTNKALLIEMAQTWAKLADQEKARAGDEKSN*
Ga0066651_102427012	3300006031	Soil	QRRAAECLRLAREATDKTNKALLLEMAQTWAKLAEQEKARSDDKTE*
Ga0075029_1004758102	3300006052	Watersheds	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKTRSEDEKAE*
Ga0070712_1015410542	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFARRESWVVEIEDHQRRAAECLRLAHEASDQTNKALLLEMAQTWIRLAEQEKARAGDDI
Ga0079222_100530092	3300006755	Agricultural Soil	VAKFEDHQRRAAECLRLAREATDKTNKALLVEMAQTWAKLAEQEKARGEDGSPE*
Ga0075426_106309092	3300006903	Populus Rhizosphere	VPRFQDHQRRAAECLRLAHEASDKTNKALLIEMAQTWAKLADQERARAEDEKSS*
Ga0075435_1007173041	3300007076	Populus Rhizosphere	LLRNGRVSVAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKARGDDEKPE*
Ga0126384_100391862	3300010046	Tropical Forest Soil	VARFQDHQRRAAECLRLAHEATDKTNKALLIEMAQTWAKLAELEKARSEDDKPQ*
Ga0126384_123189011	3300010046	Tropical Forest Soil	VTKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVKSEDEKPD*
Ga0126373_103995352	3300010048	Tropical Forest Soil	VAKFQDHQRRAAECLRFAHEATDKTNKALLIEMAQTWARLPEQEKIRGEDDKPN*
Ga0126373_119523481	3300010048	Tropical Forest Soil	AAQREGSVAKFQDHQRRAAECLRLAHDATDKTNKALLIEMAQTWAKLAEQDKARGEDAKSE*
Ga0126373_132328622	3300010048	Tropical Forest Soil	SQDHQRRAAECLRLAHDAVDKTNKALLIEMAQTWVKLAEQEKARSSDENPE*
Ga0127503_108423231	3300010154	Soil	GLSKFEDHQGRAAECLRLAHEASDLTNKALLLEMAQTWIRLAEQVKARASDDTG*
Ga0126376_127414292	3300010359	Tropical Forest Soil	QRRAAECLRLAHEASDKTNKDLLIELAKTWARLAELEKARSEDDKPQ*
Ga0126372_100839102	3300010360	Tropical Forest Soil	VTRFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAKQDKVKSEDEKPD*
Ga0126372_105087982	3300010360	Tropical Forest Soil	GSVTRFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKAKSEDEKPQ*
Ga0126378_103585132	3300010361	Tropical Forest Soil	VAKFQDHQRRAAECLRLAHEATDKTNKTLLIEMAQTWARLAEQEKIRGEDDKPN*
Ga0126379_106362342	3300010366	Tropical Forest Soil	VARFQDHQRRAAECLRLAHEASDKTNKDLLIELAQTWARLAELEKARSEDDKPQ*
Ga0126379_115353722	3300010366	Tropical Forest Soil	VARSQDHQRRAAECLRLAHDAVDKTNKALLIEMAQTWAKLAEQENARSSDENPE*
Ga0126381_1000250187	3300010376	Tropical Forest Soil	VARFQDHQRRAAECLRLAHEATDKTNKDLLIELAQTWARLAELEKARSEDDKPQ*
Ga0126381_1024454052	3300010376	Tropical Forest Soil	VARSQDHQRRAAECLRLAHDAVDKTNKALLIEMAQTWAKLAEQEKARSSDENPE*
Ga0126381_1040742012	3300010376	Tropical Forest Soil	VARFQDHQRRAAECLRLAHDAADKTNKALLIEMAQTWAKLAEQEKARSGDEKPE*
Ga0134126_127411781	3300010396	Terrestrial Soil	VPRFQDHQRRAAECLRLAHEASDKTNKALLIEMAQTWAKLADQERARAEDEK
Ga0126383_1000021522	3300010398	Tropical Forest Soil	VARFQDHQRRAAECLRLAHEATDKTNKDLLIELAQTWARLAELEKARSEDDKQQ*
Ga0126369_110164222	3300012971	Tropical Forest Soil	VTRFQDHQRRAAECLRLAPEATDRTNKALLIEMAQTWAKLAEQDKAKSEDEKPQ*
Ga0182036_103857291	3300016270	Soil	DHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0182036_104125382	3300016270	Soil	VTKFHDHQRRAAECLRLAREATDKINKTLLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0182036_108612663	3300016270	Soil	VARFQDHQRRAAECLRLAHEAADKTNKALLIEMAQTWAKLAEQEKARSGDDK
Ga0182041_100080685	3300016294	Soil	VAKFQDHQRRAAECLRLAHDATDKTNKALLIEMAQTWAKLAEQDKARGEDAKSE
Ga0182032_100866884	3300016357	Soil	VAKFQDHQRRAAECLRLAHDATDKTNKALLIELAQTWAKLAEQDKAR
Ga0182032_101302233	3300016357	Soil	GSVTKFHDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0182032_113888952	3300016357	Soil	DHQRRAAECLRLAREATDKTNKTLLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0182032_117875121	3300016357	Soil	GEGSVARFQDHQRRAAECLRLAHEAADKTNKALLIEMAQTWAKLAEQEKARSGDDKPE
Ga0182037_110652902	3300016404	Soil	VAAQREGFVAKFQDHQRRAAECLRLAHEATDKTNKALLIEMAQTWARLAEQDKARSEDEKPE
Ga0187820_11537692	3300017924	Freshwater Sediment	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKTRSEDEKAE
Ga0187825_101127352	3300017930	Freshwater Sediment	VAKFQDHQRRAAECLHLAREATDKTNKALLIEMAQTWAKLAEQDKTRSEDEKAE
Ga0187821_100084072	3300017936	Freshwater Sediment	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKARSEDEEPE
Ga0187777_100697736	3300017974	Tropical Peatland	VAKFENHQRRVAESLRLARKTTDKTNKVLLIEMAQTWAKLAVRDKVRSEDEKLK
Ga0187777_106125832	3300017974	Tropical Peatland	VAKFQDHQRRAAECLRLAHEATDKTNKALLVEMAQTWAKLAEQEKTAGEDDKSA
Ga0187777_106578051	3300017974	Tropical Peatland	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKARGGDEKAE
Ga0066667_100505722	3300018433	Grasslands Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLLEMAQTWAKLAEQEKARSDDKTE
Ga0066669_100271592	3300018482	Grasslands Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLLEMAQTWAKLAEQEKARRDDKTE
Ga0187768_10292723	3300020150	Tropical Peatland	VAKFENHQRRVAESLRLARKTTDKTNKVLLIEMAQTWAKLAVRDKVRSEDEKLE
Ga0210407_107451201	3300020579	Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDQARSENEKPE
Ga0210403_102853812	3300020580	Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDQARSEDEKPE
Ga0210399_104626872	3300020581	Soil	MAIFRVAAQREGSVPKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQDKARSEDEKPE
Ga0126371_118275221	3300021560	Tropical Forest Soil	DHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKAKSEDEKPQ
Ga0126371_136120191	3300021560	Tropical Forest Soil	VTKFQDHQRRAAECLRLAREATDRTNKALLIEMAQTWAKLAEQDKAKSEDEKPQ
Ga0207700_100240904	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKARGDDEKPE
Ga0207664_119089572	3300025929	Agricultural Soil	LLRSGRVSVAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLADQEKARAGDEKSN
Ga0207758_10130361	3300026895	Tropical Forest Soil	AICRVPAQREGSVAKFQDHQRRTAECLRLAHEATDKTNKALLIEMAQTWAKLAEQDKARGEDEKPE
Ga0207824_10056923	3300026990	Tropical Forest Soil	VAKFQDQQRRAAECLRLAREATDKTNKALLIEMAQTWARLAAQDKAGGEDEKPE
Ga0207839_10059094	3300027010	Tropical Forest Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQDKAGGEDEKPE
Ga0207855_10417672	3300027039	Tropical Forest Soil	VAKFQDHQRRAAECLRLAREATDKTHKALLIEMAQTWARLAEQDKAGGEDEKPE
Ga0207800_10105122	3300027043	Tropical Forest Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQEKARGEDEKPE
Ga0209074_103357181	3300027787	Agricultural Soil	VSVAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKARGDDEKPE
Ga0209168_105326201	3300027986	Surface Soil	RASVAKIDDHQRRAAECLRLAREAVDKTNRALLVEMAQTWAKLADQEKMRAVEQKSE
Ga0075386_117195701	3300030916	Soil	VSKFEDHKRRAAECLRLAREAIDKTNKALLIEMAQTWAKLAEQD
Ga0170834_1084702303	3300031057	Forest Soil	VAKFQDHQRRAAECLRLAHEATDKTNKALLIEMAQTWAKLAEQDQARSEEKPE
Ga0318516_100054537	3300031543	Soil	VARFEDHQRRAAECLRLAHDAADKTNKALLIEMAQTWARLAEQERVKSQDETLEKLSW
Ga0318516_101755342	3300031543	Soil	VTKFHDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0318528_107003131	3300031561	Soil	GFVAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAAQDKAGGEDEKPE
Ga0318573_103961201	3300031564	Soil	HQRRAAECLRLAREATDKINKTLLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0310915_102334392	3300031573	Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAAQDKAGGEDEKPE
Ga0310915_102718902	3300031573	Soil	VAKFQDHQRRAAECLRLAHEATDKTNKALLIEMAQTWARLAEQDKARSEDEKPE
Ga0318561_100053741	3300031679	Soil	VTKFHDHQRRAAECLRLAREATDKTNKTLLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0318496_105021821	3300031713	Soil	HREGPVARFEDHQRRAAECLRLAHDAADKTNKALLIEMAQTWARLAEQERVKSQDETLEKLSW
Ga0310813_107140382	3300031716	Soil	MVRVAALREGSVPRFQDHQRRAAECLRLAHEASDKTNKALLIEMAQTWAKLADQEKARAGDEKSN
Ga0306918_104754781	3300031744	Soil	VTKFHDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVK
Ga0318494_100166492	3300031751	Soil	VPKLEDHQRRAAECLRLAREAADKTNKALLIEMAQTWARLAEQERHKQSEIDGE
Ga0307477_101059081	3300031753	Hardwood Forest Soil	QREGSVPKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQDKARSEDEKPE
Ga0318521_105782802	3300031770	Soil	VPKLEDHQRRAAECLRLAREAADKTNKALLIEMAQTWARLAEQERQKQSEI
Ga0318543_103758361	3300031777	Soil	HQRRAAECLRLAHDAADKTNKALLIEMAQTWARLAEQERVKSQDETLEKLSW
Ga0318547_1000068111	3300031781	Soil	VARFEDHQRRAAECLRLAHDAADKTNKALLIEMAQTWARLAEQERVKS
Ga0318547_107758542	3300031781	Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQDKA
Ga0318529_102064232	3300031792	Soil	FQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQDKARGEDEKPE
Ga0318511_100057965	3300031845	Soil	VARFEDHQRRAAECLRLAHDAADKTNKALLIEMAQTWARLADQDETLEKLSW
Ga0318511_104470182	3300031845	Soil	PNSTTTKGAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0306925_110872352	3300031890	Soil	RVAAQREGSVTKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAKQDKVKSEDEKPD
Ga0306925_116897492	3300031890	Soil	VTKFHDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVKSEDE
Ga0318520_107374122	3300031897	Soil	VARFEDHQRRAAECLRLAHDAADKTNKALLIEMAQTWARLAEQERVKSQVKRWKS
Ga0306923_115409832	3300031910	Soil	IFRVAAQREGSVTKFHDHQRRAAECLRLAREATDKTNKTLLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0306923_121458481	3300031910	Soil	FQDHQRRAAECLRLAREATDRTNKALLIEMAQTWAKLAEQDKAKSEDEKPQ
Ga0310913_104376283	3300031945	Soil	VAKFQDHQRRAAECLRLAHEATDKTNKALLIEMAQTWARLAEQDKARSENEKPE
Ga0310913_109232532	3300031945	Soil	QRRAAECLRLAHEATDKTNKALLIEMAQTWARLAEQDKARSEDEKPE
Ga0310910_105520732	3300031946	Soil	VARFQDHQRRAAECLRLAHEAADKTNKALLIEMAQTWAKLAEQEKARSGDDKPE
Ga0318510_103995531	3300032064	Soil	VAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQDKARGEDEKP
Ga0318513_105842841	3300032065	Soil	VPKLEDHQRRAAECLRLAREAADKTNKALLIEMAQTWARLAEQERHKQSEIDG
Ga0318577_101065273	3300032091	Soil	VTKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWAKLAEQDKVKSEDEKPD
Ga0307471_1025160541	3300032180	Hardwood Forest Soil	VPKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAEQDKARS
Ga0306920_1024362132	3300032261	Soil	FVAKFQDHQRRAAECLRLAREATDKTNKALLIEMAQTWARLAAQDKAGGEDEKPE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087535

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences