Metagenome Family F087646

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087646
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	46 residues
Representative Sequence	PTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK
Number of Associated Samples	97
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.91 %
% of genes near scaffold ends (potentially truncated)	94.55 %
% of genes from short scaffolds (< 2000 bps)	92.73 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.182 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.454 % of family members)
Environment Ontology (ENVO)	Unclassified (24.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.32% β-sheet: 0.00% Coil/Unstructured: 75.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01557	FAA_hydrolase	44.55
PF00903	Glyoxalase	11.82
PF13343	SBP_bac_6	1.82
PF00355	Rieske	1.82
PF00596	Aldolase_II	0.91
PF01370	Epimerase	0.91
PF13449	Phytase-like	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.18 %
Unclassified	root	N/A	11.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.18 %
Unclassified	root	N/A	11.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.18 %
Unclassified	root	N/A	11.82 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	86.36 %
Unclassified	root	N/A	11.82 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	79.09 %
Unclassified	root	N/A	11.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.36 %
Unclassified	root	N/A	11.82 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.36 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.82 %
Alphaproteobacteria bacterium MarineAlpha11_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	4.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.91 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.82 %
Alphaproteobacteria bacterium MarineAlpha11_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	4.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	0.91 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.82 %
Alphaproteobacteria bacterium MarineAlpha11_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	4.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
unclassified Pelomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas	0.91 %
unclassified Beijerinckia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	11.82 %
Alphaproteobacteria bacterium MarineAlpha11_Bin1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	4.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Beijerinckia sp. 28-YEA-48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	0.91 %
Pelomonas sp. KK5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. KK5	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig515474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	607	Open in IMG/M
2170459021\|G14TP7Y02JZFY2	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300000443\|F12B_10214213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1043014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1011941	All Organisms → cellular organisms → Bacteria → Proteobacteria	1224	Open in IMG/M
3300001991\|JGI24743J22301_10119860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300002155\|JGI24033J26618_1059707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300002459\|JGI24751J29686_10025328	Not Available	1231	Open in IMG/M
3300002914\|JGI25617J43924_10002748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4938	Open in IMG/M
3300004114\|Ga0062593_102891841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300004463\|Ga0063356_100084829	All Organisms → cellular organisms → Bacteria → Proteobacteria	3366	Open in IMG/M
3300004463\|Ga0063356_104906152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300004633\|Ga0066395_10302095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	875	Open in IMG/M
3300005332\|Ga0066388_100494769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1859	Open in IMG/M
3300005338\|Ga0068868_101328627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	668	Open in IMG/M
3300005365\|Ga0070688_100396411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1021	Open in IMG/M
3300005439\|Ga0070711_101427700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300005540\|Ga0066697_10475914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300005548\|Ga0070665_101367044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300005560\|Ga0066670_10787064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300005564\|Ga0070664_100836685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	861	Open in IMG/M
3300005764\|Ga0066903_102427005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	1014	Open in IMG/M
3300005764\|Ga0066903_102786533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	948	Open in IMG/M
3300005764\|Ga0066903_105706048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300005764\|Ga0066903_105737764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300006173\|Ga0070716_100668706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	790	Open in IMG/M
3300006186\|Ga0075369_10545443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300006195\|Ga0075366_10529637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300006755\|Ga0079222_12273006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300006796\|Ga0066665_10128206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1900	Open in IMG/M
3300007255\|Ga0099791_10660804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300009089\|Ga0099828_10383718	All Organisms → cellular organisms → Bacteria → Proteobacteria	1267	Open in IMG/M
3300009792\|Ga0126374_10243685	Not Available	1169	Open in IMG/M
3300010046\|Ga0126384_10324293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1275	Open in IMG/M
3300010046\|Ga0126384_10544337	Not Available	1008	Open in IMG/M
3300010047\|Ga0126382_10450918	Not Available	1020	Open in IMG/M
3300010159\|Ga0099796_10121254	Not Available	1005	Open in IMG/M
3300010336\|Ga0134071_10526542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300010359\|Ga0126376_10993011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	839	Open in IMG/M
3300010359\|Ga0126376_12735384	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300010360\|Ga0126372_12890740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300010361\|Ga0126378_11952582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	668	Open in IMG/M
3300010398\|Ga0126383_11275831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	824	Open in IMG/M
3300012207\|Ga0137381_10986368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300012208\|Ga0137376_10077244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2784	Open in IMG/M
3300012469\|Ga0150984_108162257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300012908\|Ga0157286_10126139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300012917\|Ga0137395_10516900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	860	Open in IMG/M
3300012924\|Ga0137413_10107183	All Organisms → cellular organisms → Bacteria → Proteobacteria	1755	Open in IMG/M
3300012948\|Ga0126375_10239776	Not Available	1220	Open in IMG/M
3300012960\|Ga0164301_10067064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1927	Open in IMG/M
3300012971\|Ga0126369_10355673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1488	Open in IMG/M
3300012971\|Ga0126369_12007756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300012971\|Ga0126369_13346857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300014150\|Ga0134081_10302663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300016294\|Ga0182041_11263197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	675	Open in IMG/M
3300016341\|Ga0182035_11065704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300016357\|Ga0182032_12047599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300018028\|Ga0184608_10060385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1516	Open in IMG/M
3300018433\|Ga0066667_10980951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300018433\|Ga0066667_11637161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300018468\|Ga0066662_10217679	Not Available	1528	Open in IMG/M
3300018476\|Ga0190274_10829045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	985	Open in IMG/M
3300018482\|Ga0066669_11275859	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300019873\|Ga0193700_1058496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300022756\|Ga0222622_10289864	Not Available	1123	Open in IMG/M
3300025321\|Ga0207656_10080142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1466	Open in IMG/M
3300025903\|Ga0207680_10803424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300025930\|Ga0207701_10215287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1684	Open in IMG/M
3300025960\|Ga0207651_10037060	All Organisms → cellular organisms → Bacteria	3191	Open in IMG/M
3300026088\|Ga0207641_11897124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300026320\|Ga0209131_1086565	Not Available	1679	Open in IMG/M
3300026499\|Ga0257181_1077907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300026552\|Ga0209577_10413348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	964	Open in IMG/M
3300026552\|Ga0209577_10592081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300027383\|Ga0209213_1011971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1582	Open in IMG/M
3300027616\|Ga0209106_1148310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300027663\|Ga0208990_1042699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1389	Open in IMG/M
3300027671\|Ga0209588_1021430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2030	Open in IMG/M
3300027738\|Ga0208989_10061711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1291	Open in IMG/M
3300027846\|Ga0209180_10144089	Not Available	1371	Open in IMG/M
3300027882\|Ga0209590_10294618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	1041	Open in IMG/M
3300027909\|Ga0209382_10200909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2285	Open in IMG/M
3300028047\|Ga0209526_10586592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300028380\|Ga0268265_12449021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300028790\|Ga0307283_10130445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300028793\|Ga0307299_10386892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031446\|Ga0170820_14834510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300031469\|Ga0170819_13312132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300031549\|Ga0318571_10100926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha11_Bin1	944	Open in IMG/M
3300031564\|Ga0318573_10170058	Not Available	1148	Open in IMG/M
3300031564\|Ga0318573_10417266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300031736\|Ga0318501_10050272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1945	Open in IMG/M
3300031736\|Ga0318501_10517702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300031748\|Ga0318492_10392050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300031769\|Ga0318526_10272406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300031819\|Ga0318568_10857371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300031879\|Ga0306919_10093842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2096	Open in IMG/M
3300031880\|Ga0318544_10039309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1676	Open in IMG/M
3300031890\|Ga0306925_11417832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. KK5	684	Open in IMG/M
3300031892\|Ga0310893_10546727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031893\|Ga0318536_10006888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	4661	Open in IMG/M
3300031897\|Ga0318520_10594711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	687	Open in IMG/M
3300031946\|Ga0310910_10167461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1690	Open in IMG/M
3300031946\|Ga0310910_10591962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	879	Open in IMG/M
3300032051\|Ga0318532_10069424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1225	Open in IMG/M
3300032094\|Ga0318540_10134472	Not Available	1179	Open in IMG/M
3300032261\|Ga0306920_101071258	Not Available	1170	Open in IMG/M
3300033290\|Ga0318519_10348810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	874	Open in IMG/M
3300033550\|Ga0247829_10298591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1307	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.64%
Host-Associated	Host-Associated	15.45%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.82%
Plants	Host-Associated → Plants	15.45%
Aquatic	Environmental → Aquatic	1.82%
Solid Waste	Engineered → Solid Waste	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.45%
Sediment	Environmental → Aquatic → Sediment	1.82%
Roots	Host-Associated → Plants → Roots	1.82%
Grass	Engineered → Solid Waste → Grass	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.18%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.18%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%
Composting	Engineered → Solid Waste → Grass → Composting	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.82%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006186	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_06843190	2124908045	Soil	GRIPTRHDVPVNPTYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK
4NP_02508320	2170459021	Switchgrass, Maize And Mischanthus Litter	ADVPVNPSDVSERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR
F12B_102142132	3300000443	Soil	KRGRMPARSDVPINPAHVSDRLKDRKIIATIFGGDEQRKWQGLFKEIFTPK*
AF_2010_repII_A01DRAFT_10430141	3300000580	Forest Soil	PAYVSDRLKDRKIIATIFGGQEQKKWQGLFKDIFRXR*
AP72_2010_repI_A100DRAFT_10119411	3300000837	Forest Soil	DVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK*
JGI24743J22301_101198602	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	LSRRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
JGI24033J26618_10597071	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	MPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
JGI24751J29686_100253282	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	LTRRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
JGI25617J43924_100027481	3300002914	Grasslands Soil	VNPTYVSERLKDRKIIATIFAGEEQRKWQGLFKVIFKPR*
Ga0062593_1028918412	3300004114	Soil	LTKRGRMPTRADVPVNPSDVSERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR*
Ga0063356_1000848293	3300004463	Arabidopsis Thaliana Rhizosphere	VPVNPPHVTDVLKDRKIIATIFAGDEQKKWQGLFKEIFRAR*
Ga0063356_1049061521	3300004463	Arabidopsis Thaliana Rhizosphere	PVNPTYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPR*
Ga0066395_103020952	3300004633	Tropical Forest Soil	HDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKSK*
Ga0066388_1004947693	3300005332	Tropical Forest Soil	DVPVNPADITDRLKDRKIIATIFSGEDQKKWQGLFKNIFKPK*
Ga0068868_1013286272	3300005338	Miscanthus Rhizosphere	FLTRRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
Ga0070688_1003964112	3300005365	Switchgrass Rhizosphere	MPTRADVPVNPSDVSERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR*
Ga0070711_1014277002	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	DVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK*
Ga0066697_104759141	3300005540	Soil	KRGRMPTRADVPVNPADVTDRLKDRTIIATIFAGEEQKKWQGLFKDIFKPK*
Ga0070665_1013670441	3300005548	Switchgrass Rhizosphere	AEQFLTRRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
Ga0066670_107870642	3300005560	Soil	PHVQDLLQGKKIVATIFAGEEQKKWQGLFREIFKPR*
Ga0070664_1008366851	3300005564	Corn Rhizosphere	PAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
Ga0066903_1024270051	3300005764	Tropical Forest Soil	LTTRGRIPTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK*
Ga0066903_1027865331	3300005764	Tropical Forest Soil	VAEMLKERKIIATIFAGEEQKKWQGLFKDIFKQR*
Ga0066903_1057060482	3300005764	Tropical Forest Soil	TRQDVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKEIFKPK*
Ga0066903_1057377642	3300005764	Tropical Forest Soil	PTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKEIFKPK*
Ga0070716_1006687062	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	QFLTRRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
Ga0075369_105454431	3300006186	Populus Endosphere	VNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
Ga0075366_105296372	3300006195	Populus Endosphere	FLTRRGRMPTRTDVPVNPAHMSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
Ga0079222_122730061	3300006755	Agricultural Soil	KRGRMPTRADVPVNPSDVSERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR*
Ga0066665_101282063	3300006796	Soil	PTRADVPVNPADVTDRLKDRTIIATIFAGEEQKKWQGLFKDIFKPK*
Ga0099791_106608042	3300007255	Vadose Zone Soil	KRGRMPTRTDVPVNPAEVTDRLKDRTIIATIFAGEEQKKWQGLFKDIFKPK*
Ga0099828_103837183	3300009089	Vadose Zone Soil	VTDVLKDRKIIATIFAGEEQKKWQGLFKEIFRSR*
Ga0126374_102436852	3300009792	Tropical Forest Soil	PTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK*
Ga0126384_103242933	3300010046	Tropical Forest Soil	DVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKEIFKPK*
Ga0126384_105443371	3300010046	Tropical Forest Soil	MPTRTDVPVNPPAVAEMLKERKIIATIFAGEEQKKWQGLFKDIFKAR*
Ga0126382_104509182	3300010047	Tropical Forest Soil	VNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK*
Ga0099796_101212542	3300010159	Vadose Zone Soil	PTYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPR*
Ga0134071_105265421	3300010336	Grasslands Soil	MPTRHDVTVNPPSVSEALKGKEIIATIFAGEEQKKWQGLFKEIFRPR*
Ga0126376_109930111	3300010359	Tropical Forest Soil	RQDVPVNPAYVSERLKDRKIIATIFAGDGQKKWQGLFKDIFKPK*
Ga0126376_127353843	3300010359	Tropical Forest Soil	PHVSEMLKGRKIIATIFAGEEQKKWQGLFKDIFKPR*
Ga0126372_128907402	3300010360	Tropical Forest Soil	AYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKSK*
Ga0126378_119525821	3300010361	Tropical Forest Soil	HDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK*
Ga0126383_112758312	3300010398	Tropical Forest Soil	MTTRGRMPTRHDVRVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFRPK*
Ga0137381_109863681	3300012207	Vadose Zone Soil	RGRMPTRADVPVNPADITDRLKERTIIATIFSGEEQKKWQGLFKDIFKPK*
Ga0137376_100772441	3300012208	Vadose Zone Soil	DVPVNPTYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPR*
Ga0150984_1081622571	3300012469	Avena Fatua Rhizosphere	PVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
Ga0157286_101261391	3300012908	Soil	RADVPVNPSDVSERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR*
Ga0137395_105169001	3300012917	Vadose Zone Soil	PGVTEILMERKIIATIFAGEEQKKWQGLFKQIFKSR*
Ga0137413_101071832	3300012924	Vadose Zone Soil	VSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR*
Ga0126375_102397762	3300012948	Tropical Forest Soil	LTKRGRMPTRQDVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK*
Ga0164301_100670641	3300012960	Soil	TRTDVPVNPAHVSERLKERKIVATIFAGEEQKKWQGLFKEIFKPR*
Ga0126369_103556733	3300012971	Tropical Forest Soil	QLLTRRGRMPTRLDVPVNPAHVGDMLKERKIIATIFAGDEQKKWQGLFKDIFKPR*
Ga0126369_120077562	3300012971	Tropical Forest Soil	PVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK*
Ga0126369_133468572	3300012971	Tropical Forest Soil	EQFLTTRGRMPTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK*
Ga0134081_103026631	3300014150	Grasslands Soil	VTDRLKDRTIIATIFAGEEQKKWQGLFKDIFKPK*
Ga0182041_112631971	3300016294	Soil	NPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFRPK
Ga0182035_110657041	3300016341	Soil	TMRGRMPTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFRPK
Ga0182032_120475992	3300016357	Soil	RGRMPTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKSK
Ga0184608_100603851	3300018028	Groundwater Sediment	RMPTRADVQVNPAGVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0066667_109809511	3300018433	Grasslands Soil	PVNPADVTDRLKDRTIIATIFSGQEQKKWQGLFKDVFKPN
Ga0066667_116371612	3300018433	Grasslands Soil	VPINPTYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK
Ga0066662_102176791	3300018468	Grasslands Soil	NPPHVSDVLKGRQIIATIFAGEEQKKWQGLFREIFKPR
Ga0190274_108290452	3300018476	Soil	PVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0066669_112758593	3300018482	Grasslands Soil	MPTRADVPVNPADITDRLKERTIIATIFSGEEQKKWQGLFKDVFKPK
Ga0193700_10584962	3300019873	Soil	GVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0222622_102898642	3300022756	Groundwater Sediment	ELFLTKRGRMPTREDVPINPPQVGDMLKERKIVATIFAGEEQKKWQGLFKDIFRPR
Ga0207656_100801421	3300025321	Corn Rhizosphere	TRTDEPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0207680_108034242	3300025903	Switchgrass Rhizosphere	TRADVPVNPSDVSERLNDRKIIATIFAGDAQKKWQGLFKEIFRPR
Ga0207701_102152871	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0207651_100370601	3300025960	Switchgrass Rhizosphere	EQFLTGRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0207641_118971242	3300026088	Switchgrass Rhizosphere	MPTRADVPVNPSDVSERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR
Ga0209131_10865652	3300026320	Grasslands Soil	TDVPVNPAEVTDRLKDRTIIATIFAGEEQKKWQGLFKDIFRPK
Ga0257181_10779072	3300026499	Soil	YVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK
Ga0209577_104133481	3300026552	Soil	QFLTKSGRMPTRRDVAINPPHVQDLLQGKKIVATIFAGEEQKKWQGLFREIFKPR
Ga0209577_105920812	3300026552	Soil	DVPVNPADVTDRLKDRTIIATIFAGEEQKKWQGLFKDIFKPK
Ga0209213_10119713	3300027383	Forest Soil	FLTRRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFRPR
Ga0209106_11483102	3300027616	Forest Soil	RMPTREDVPVNPPQVGDMLKERKIVATIFAGEEQKRWQGLFKDIFRPR
Ga0208990_10426993	3300027663	Forest Soil	TKRGRMPTRTDVPINPPHVSERLKERKIIATIFAGEEQKKWQGLFKEIFRPR
Ga0209588_10214301	3300027671	Vadose Zone Soil	FREFLTTRGRMPTRHDVPVNPTYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK
Ga0208989_100617111	3300027738	Forest Soil	TREDVPVNPPQVGDMLKERKIVATIFAGEEQKRWQGLFKDIFRPR
Ga0209180_101440891	3300027846	Vadose Zone Soil	QFLTQRGRMPTRPDVPVNPPAAAERLKGKKIIATIFAGEEQKRWQGLFKEIFKQR
Ga0209590_102946182	3300027882	Vadose Zone Soil	FLTRRGRMPTRPDVPVNPPHVTDVLKDRKIIATIFAGEEQKKWQGLFKEIFRSR
Ga0209382_102009091	3300027909	Populus Rhizosphere	VNPSDVSERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR
Ga0209526_105865922	3300028047	Forest Soil	MPTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKPK
Ga0268265_124490212	3300028380	Switchgrass Rhizosphere	PVNPSDVGERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR
Ga0307283_101304452	3300028790	Soil	ADVQVNPAGVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0307299_103868921	3300028793	Soil	GRMPTREDVPVNPPQVGDMLKERKIVATIFAGEEQKKWQGLFKDIFRPR
Ga0170820_148345101	3300031446	Forest Soil	RGRMPTRADVQVNPADVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0170819_133121322	3300031469	Forest Soil	EAEQFLTRRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR
Ga0318571_101009261	3300031549	Soil	VPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0318573_101700581	3300031564	Soil	NPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0318573_104172661	3300031564	Soil	VLVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0318501_100502721	3300031736	Soil	QFLTKRGRMPTRQNVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0318501_105177021	3300031736	Soil	LLTKRGRMPTRPDVPINPAYVSDRLKDRKIIATIFGGQEQKKWQGLFKDIFRPR
Ga0318492_103920501	3300031748	Soil	MPTRQDVPVNPPYVQEVLKGREIIATIFAGEEQKKWQGLFKEIFKPR
Ga0318526_102724062	3300031769	Soil	EQFLTKRGRMPTRHDVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0318568_108573711	3300031819	Soil	QFLTTRGRMPTRHDVRVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFRPK
Ga0306919_100938421	3300031879	Soil	TRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKSK
Ga0318544_100393091	3300031880	Soil	KRGRMPTRQDVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0306925_114178323	3300031890	Soil	PDVPVNPPSVTEALLERKVIATIFTGEEQKKWQGLFKQIFKPR
Ga0310893_105467271	3300031892	Soil	GRMPTRADVPVNPSDVSERLNDRKIIATIFAGEAQKKWQGLFKEIFRPR
Ga0318536_100068887	3300031893	Soil	YVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0318520_105947112	3300031897	Soil	GNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFRPK
Ga0310910_101674613	3300031946	Soil	DVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0310910_105919622	3300031946	Soil	MPTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIF
Ga0318532_100694243	3300032051	Soil	QDVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0318540_101344721	3300032094	Soil	FLTTRGRMPTRHDVPVNPAYVSERLKDRKIIATIFAGEEQKKWQGLFKDIFKSK
Ga0306920_1010712582	3300032261	Soil	RIPTRHDVPVNPAYVSERLKDRKIIATIFAGEEQRKWQGLFKDIFKSK
Ga0318519_103488102	3300033290	Soil	QFLTKRGRMPTRQDVPVNPAYVSERLKDRKIIATIFAGDEQKKWQGLFKDIFKPK
Ga0247829_102985911	3300033550	Soil	DVPVNPAHVSERLKERKIVATIFAGEEQKKWQGLFKEIFKPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087646

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences