Metagenome / Metatranscriptome Family F087650

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087650
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	70 residues
Representative Sequence	MESSVRLDHLATWNEVRDALAYASRDAFELVRARGADIELQVDVSNGVGILCEELAWLRIANEALDSKLN
Number of Associated Samples	81
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.45 %
% of genes near scaffold ends (potentially truncated)	16.36 %
% of genes from short scaffolds (< 2000 bps)	71.82 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.455 % of family members)
Environment Ontology (ENVO)	Unclassified (60.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (82.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.06% β-sheet: 0.00% Coil/Unstructured: 46.94%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF05532	CsbD	30.91
PF11752	DUF3309	8.18
PF04972	BON	8.18
PF00072	Response_reg	1.82
PF13545	HTH_Crp_2	1.82
PF13649	Methyltransf_25	1.82
PF00912	Transgly	0.91
PF00873	ACR_tran	0.91
PF02852	Pyr_redox_dim	0.91
PF12680	SnoaL_2	0.91
PF13278	Obsolete Pfam Family	0.91
PF13439	Glyco_transf_4	0.91
PF07228	SpoIIE	0.91
PF16576	HlyD_D23	0.91
PF01575	MaoC_dehydratas	0.91
PF05137	PilN	0.91
PF12796	Ank_2	0.91
PF07238	PilZ	0.91
PF13372	Alginate_exp	0.91
PF02405	MlaE	0.91
PF02321	OEP	0.91
PF00905	Transpeptidase	0.91
PF08447	PAS_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	30.91
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.82
COG3166	Type IV pilus assembly protein PilN	Cell motility [N]	1.82
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.91
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.91
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.27 %
Unclassified	root	N/A	28.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.27 %
Granulicella sp. dw_53	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100662672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1687	Open in IMG/M
3300000789\|JGI1027J11758_12325515	Not Available	832	Open in IMG/M
3300000955\|JGI1027J12803_107314093	Not Available	1076	Open in IMG/M
3300002245\|JGIcombinedJ26739_100060600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3467	Open in IMG/M
3300002245\|JGIcombinedJ26739_100414578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1225	Open in IMG/M
3300002647\|Ga0005469J37257_101499	Not Available	751	Open in IMG/M
3300002671\|Ga0005481J37269_101298	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2850	Open in IMG/M
3300002673\|Ga0005480J37268_108688	Not Available	1172	Open in IMG/M
3300002681\|Ga0005471J37259_107172	Not Available	806	Open in IMG/M
3300004099\|Ga0058900_1330305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300004099\|Ga0058900_1435171	Not Available	1115	Open in IMG/M
3300004103\|Ga0058903_1435826	Not Available	675	Open in IMG/M
3300004118\|Ga0058886_1306139	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300004120\|Ga0058901_1499680	Not Available	512	Open in IMG/M
3300004133\|Ga0058892_1300384	Not Available	1246	Open in IMG/M
3300004137\|Ga0058883_1000655	Not Available	1257	Open in IMG/M
3300004137\|Ga0058883_1535559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300004139\|Ga0058897_10758759	Not Available	513	Open in IMG/M
3300004479\|Ga0062595_100838710	Not Available	764	Open in IMG/M
3300004631\|Ga0058899_10136853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1327	Open in IMG/M
3300004631\|Ga0058899_11324778	Not Available	538	Open in IMG/M
3300004631\|Ga0058899_12233375	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300004631\|Ga0058899_12273528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1673	Open in IMG/M
3300005336\|Ga0070680_100215132	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M
3300005434\|Ga0070709_10742905	Not Available	766	Open in IMG/M
3300005436\|Ga0070713_100640250	All Organisms → cellular organisms → Bacteria → Acidobacteria	1012	Open in IMG/M
3300005518\|Ga0070699_100146288	All Organisms → cellular organisms → Bacteria	2088	Open in IMG/M
3300005526\|Ga0073909_10035746	All Organisms → cellular organisms → Bacteria → Acidobacteria	1730	Open in IMG/M
3300005536\|Ga0070697_100402395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1188	Open in IMG/M
3300005537\|Ga0070730_10090212	All Organisms → cellular organisms → Bacteria → Proteobacteria	2134	Open in IMG/M
3300005537\|Ga0070730_10512598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300005591\|Ga0070761_10042702	All Organisms → cellular organisms → Bacteria	2546	Open in IMG/M
3300005591\|Ga0070761_10192249	Not Available	1207	Open in IMG/M
3300005602\|Ga0070762_10011953	All Organisms → cellular organisms → Bacteria	4384	Open in IMG/M
3300005602\|Ga0070762_10444963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300005610\|Ga0070763_10941754	Not Available	515	Open in IMG/M
3300005921\|Ga0070766_10086236	All Organisms → cellular organisms → Bacteria	1836	Open in IMG/M
3300006102\|Ga0075015_100187889	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300006173\|Ga0070716_100552355	All Organisms → cellular organisms → Bacteria → Acidobacteria	859	Open in IMG/M
3300006893\|Ga0073928_10271160	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300010858\|Ga0126345_1046189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1533	Open in IMG/M
3300010859\|Ga0126352_1007867	All Organisms → cellular organisms → Bacteria → Proteobacteria	1285	Open in IMG/M
3300010880\|Ga0126350_10019989	All Organisms → cellular organisms → Bacteria → Acidobacteria	1492	Open in IMG/M
3300011120\|Ga0150983_11518762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300011120\|Ga0150983_12621769	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300011120\|Ga0150983_13043564	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300011120\|Ga0150983_14964581	All Organisms → cellular organisms → Bacteria → Acidobacteria	1916	Open in IMG/M
3300011120\|Ga0150983_15528098	All Organisms → cellular organisms → Bacteria → Acidobacteria	1464	Open in IMG/M
3300012931\|Ga0153915_10122945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2784	Open in IMG/M
3300012957\|Ga0164303_11232046	Not Available	549	Open in IMG/M
3300014169\|Ga0181531_10001064	All Organisms → cellular organisms → Bacteria	17728	Open in IMG/M
3300020579\|Ga0210407_10005902	All Organisms → cellular organisms → Bacteria → Acidobacteria	9431	Open in IMG/M
3300020579\|Ga0210407_10114510	All Organisms → cellular organisms → Bacteria	2058	Open in IMG/M
3300020580\|Ga0210403_10001602	All Organisms → cellular organisms → Bacteria	21308	Open in IMG/M
3300020580\|Ga0210403_10164059	All Organisms → cellular organisms → Bacteria	1819	Open in IMG/M
3300020580\|Ga0210403_10300157	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300020580\|Ga0210403_10685447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822	Open in IMG/M
3300020581\|Ga0210399_10217117	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	1592	Open in IMG/M
3300020581\|Ga0210399_10726305	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300020582\|Ga0210395_10000063	All Organisms → cellular organisms → Bacteria → Acidobacteria	97836	Open in IMG/M
3300020582\|Ga0210395_10000451	All Organisms → cellular organisms → Bacteria	32488	Open in IMG/M
3300020583\|Ga0210401_10074491	All Organisms → cellular organisms → Bacteria	3196	Open in IMG/M
3300020583\|Ga0210401_10120616	All Organisms → cellular organisms → Bacteria → Acidobacteria	2460	Open in IMG/M
3300021171\|Ga0210405_10007129	All Organisms → cellular organisms → Bacteria	9870	Open in IMG/M
3300021171\|Ga0210405_10606570	Not Available	852	Open in IMG/M
3300021181\|Ga0210388_11197312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300021401\|Ga0210393_10000016	All Organisms → cellular organisms → Bacteria	269193	Open in IMG/M
3300021401\|Ga0210393_10031395	All Organisms → cellular organisms → Bacteria	4153	Open in IMG/M
3300021401\|Ga0210393_10407066	All Organisms → cellular organisms → Bacteria → Acidobacteria	1109	Open in IMG/M
3300021405\|Ga0210387_10002216	All Organisms → cellular organisms → Bacteria → Acidobacteria	14787	Open in IMG/M
3300021405\|Ga0210387_10017726	All Organisms → cellular organisms → Bacteria	5524	Open in IMG/M
3300021406\|Ga0210386_10341736	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300021407\|Ga0210383_10058321	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3222	Open in IMG/M
3300021407\|Ga0210383_11406876	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300021420\|Ga0210394_10154565	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300021432\|Ga0210384_10012385	All Organisms → cellular organisms → Bacteria → Acidobacteria	8558	Open in IMG/M
3300021433\|Ga0210391_10079198	Not Available	2596	Open in IMG/M
3300021433\|Ga0210391_11069530	Not Available	627	Open in IMG/M
3300021474\|Ga0210390_10020204	All Organisms → cellular organisms → Bacteria → Acidobacteria	5416	Open in IMG/M
3300021477\|Ga0210398_11513233	Not Available	522	Open in IMG/M
3300021478\|Ga0210402_11887559	Not Available	523	Open in IMG/M
3300021479\|Ga0210410_10338074	Not Available	1350	Open in IMG/M
3300024178\|Ga0247694_1001198	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4636	Open in IMG/M
3300024182\|Ga0247669_1000255	All Organisms → cellular organisms → Bacteria → Acidobacteria	25221	Open in IMG/M
3300024251\|Ga0247679_1028072	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	950	Open in IMG/M
3300024290\|Ga0247667_1034553	All Organisms → cellular organisms → Bacteria → Proteobacteria	959	Open in IMG/M
3300024323\|Ga0247666_1027780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1191	Open in IMG/M
3300025921\|Ga0207652_11201502	Not Available	660	Open in IMG/M
3300025928\|Ga0207700_11173657	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300027562\|Ga0209735_1027187	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300027583\|Ga0209527_1097444	Not Available	660	Open in IMG/M
3300027629\|Ga0209422_1146967	Not Available	530	Open in IMG/M
3300027821\|Ga0209811_10064625	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300027853\|Ga0209274_10013115	All Organisms → cellular organisms → Bacteria	3718	Open in IMG/M
3300027855\|Ga0209693_10272337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300027857\|Ga0209166_10026338	All Organisms → cellular organisms → Bacteria → Proteobacteria	3564	Open in IMG/M
3300027884\|Ga0209275_10132922	All Organisms → cellular organisms → Bacteria → Proteobacteria	1305	Open in IMG/M
3300027884\|Ga0209275_10806336	Not Available	541	Open in IMG/M
3300027884\|Ga0209275_10838932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300027908\|Ga0209006_10024225	All Organisms → cellular organisms → Bacteria	5495	Open in IMG/M
3300028047\|Ga0209526_10950443	Not Available	518	Open in IMG/M
3300028138\|Ga0247684_1023789	All Organisms → cellular organisms → Bacteria → Proteobacteria	968	Open in IMG/M
3300028563\|Ga0265319_1161185	Not Available	693	Open in IMG/M
3300028906\|Ga0308309_10020615	All Organisms → cellular organisms → Bacteria	4340	Open in IMG/M
3300030800\|Ga0074032_10916250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300031049\|Ga0074036_10891849	Not Available	614	Open in IMG/M
3300031823\|Ga0307478_10001416	All Organisms → cellular organisms → Bacteria	20817	Open in IMG/M
3300031823\|Ga0307478_11772698	Not Available	508	Open in IMG/M
3300032756\|Ga0315742_10270175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1199	Open in IMG/M
3300033480\|Ga0316620_10899411	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.45%
Aquatic	Environmental → Aquatic	3.64%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.45%
Freshwater	Environmental → Aquatic → Freshwater	1.82%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.91%
Sediment	Environmental → Aquatic → Sediment	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Loam	Environmental → Terrestrial → Soil → Loam	44.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	37.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	26.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	10.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.45%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.91%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002647	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF118 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002671	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF130 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002673	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF129 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002681	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004118	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF208 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004133	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF220 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004137	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030800	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral N1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031049	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C2 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1006626722	3300000364	Soil	METCVRQDHLTTWKELCDALAYLSRDAFELSQAREADSELDDRESKGLAILGEELAWLRVANEALDCRLN*
JGI1027J11758_123255151	3300000789	Soil	MERCVRLDHLATWNEVCDALAYLSREAFELAHAREADGELEDGGSNGVGILAEELAWLRVANEALDCRLN*
JGI1027J12803_1073140932	3300000955	Soil	MERCVRLDHLATWNEVCDALAYLSREAFELAHAREADGELEDGGSNGVGILAEELAWLRVANEALDCR
JGIcombinedJ26739_1000606004	3300002245	Forest Soil	MESCVRLDHLATWNEVCDALAYLSRDAFELAHAHETDGELEDGGSNGVGILGEELAWLRVANEVVDCRLN*
JGIcombinedJ26739_1004145782	3300002245	Forest Soil	MHSSVRLDHLATWNEVREALAYSSRDPFEPVRARGADIELEIEVDVGDGVGILREELAWMRLANEALDSKLN*
Ga0005469J37257_1014993	3300002647	Forest Soil	MASSGRNALVVTTLGLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEAR
Ga0005481J37269_1012983	3300002671	Forest Soil	MASSGRNALVVTTLGLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEAMDSRLN*
Ga0005480J37268_1086883	3300002673	Forest Soil	MMESSVQLDHIATWNEVRDALEYSSRDAFELLPARDGDVELKFDLSSGVGCLSEDLAWLRVAREALDSRSN*
Ga0005471J37259_1071723	3300002681	Forest Soil	MASSGRNALVVTTLGLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEARDSRLN*
Ga0058900_13303052	3300004099	Forest Soil	MHSSVRLDHLATWNEVREALAYSSRDPFEPVRARGADIELEVEVDVGNGVGILREELAWMRLANEALDSKLN*
Ga0058900_14351712	3300004099	Forest Soil	MESSGRLDHLATWNEVRDALAALTREAFQLVTVREGEVELEVDVSSGVGFLSEDLAWLRIANEAMDSRLN*
Ga0058903_14358261	3300004103	Forest Soil	MESSTRLDHLATWNEVCDALAYLSRDALELVHAREAGGELTVAISNGVGTLSEELAWLRIANEALDSSLN*
Ga0058886_13061391	3300004118	Forest Soil	MESSGRLDHLATWNEVRDALAALTREAFQLVTVREGEVELEVDVSNGVGFLSEDLAWLRIANEAMDSRLN*
Ga0058901_14996801	3300004120	Forest Soil	MESRVWLDHLATWNEVCDALAYLSCDAFELAHARQTDSELEARGSNGAGIFAEELAWLRAASEVLDSRRN*
Ga0058892_13003843	3300004133	Forest Soil	MESSGRNALVVTTLGLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEAMDSRLN*
Ga0058883_10006552	3300004137	Forest Soil	MESSGRLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEAMDSRLN*
Ga0058883_15355591	3300004137	Forest Soil	MQSSVRLDHLATWNEVREALAYSTRDPFEPVRARGADIELEIEVDVGDGVGILREELAWMRLANEALDSKLN*
Ga0058897_107587591	3300004139	Forest Soil	MESRVWLDHLATWNEVCDALAYLSCDAFELAHARQTDSELEAGGSNGAGIFAEELAWLRVASEVLDSRRN*
Ga0062595_1008387101	3300004479	Soil	MKSAVRLDHLATWNEVCDALAYLSRDAFELGCARDADVELEADVSNRVSILCEELAWLRVGNEALDSWLN*
Ga0058899_101368532	3300004631	Forest Soil	MQSSIRLDHLATWNEVCDALAYLSRDALELVHAREADGELNVAVSNGVGTLSEELAWLRIANEALDSSLN*
Ga0058899_113247782	3300004631	Forest Soil	MENACGLDHPATWNEVREALAYSSGAAFELVSACGVDVELEVDVGNGVSMLCEELAWLRLANEALDSRLN*
Ga0058899_122333752	3300004631	Forest Soil	MESSVRLDHLATWNEVRDALAYASRDAFELVRARGADIELQVDVSNGVGILCEELAWLRIANKALDSKLN*
Ga0058899_122735281	3300004631	Forest Soil	MMESSVQLDHIATWNEVRDALEYSSRDAFDLLPARDGDVELKFDLSSGVGCLSEDLAWLRVAREALDSRSN*
Ga0070680_1002151321	3300005336	Corn Rhizosphere	MKSAVRLDHLATWNEVCDALAYLSRDAFELVRARDADIEMEADFGNGVEVLCEELAWLRVGNEALDSWLN*
Ga0070709_107429052	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	METCVRLDRLATWNEVCDALGYLSRDAFELAHAREAEGELEDRRSNGVDILCEELAWLRVANEVLDCRLN*
Ga0070713_1006402502	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	METCVRLEHLATRNEVCDALGYLSRDAFELAHAREAEGELEDRRSNGVDILCEELARLRIANEFWIAG*
Ga0070699_1001462883	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	EVCDALAYLSRDAFELVRARDADIEMEADFGNGVEVLCEELAWLRVGNEALDSWLN*
Ga0073909_100357461	3300005526	Surface Soil	MKSAVRLDHLATWNEVCDALAYLSRDAFELVRSRDADIELEADVSNGVDVLCEELAWLRVGNEALDSWLN*
Ga0070697_1004023952	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKSAVRLDHLATWNEVCDALAYLTRDAFELGCARGADLELEADASNRVSILCEELAWLRVGNEALDSWLN*
Ga0070730_100902123	3300005537	Surface Soil	MKSAVRLDHLATWNEVCDALAYLSRDAFEPGCARDTVVELEAEGSNRMSILCEELAWLRVGNEALDSWLN*
Ga0070730_105125982	3300005537	Surface Soil	MKSAVRLDHLATWNEVCDALAYLTRDAFELGCARGADLELEADASNRVSILCEELAWLRVGNEALDTWLN*
Ga0070761_100427023	3300005591	Soil	MEIFVQLDHLATWNEVREALASESRDALELVRPRGAEIELEVDICSGTGVLSEELAWLRLANEALDSRPN*
Ga0070761_101922494	3300005591	Soil	MVESSIQLDHIATWNEVRDALEYSSRDAFQLLPARDGDVELNIDLSNGVGCLSEELAWLRVAKEALDSRSN*
Ga0070762_100119533	3300005602	Soil	MVESSIPLDHIATWSEVCDALAYSRRDASESVPAGGCDMEFAVDLNNGVGCLSEELAWFRVANEALDSRPN*
Ga0070762_104449633	3300005602	Soil	MQSSIRLDHLATWNEVCDALAYLSRDALELVHAREAGGELTVAISNGVGTLSEELAWLRIANEALDSSLN*
Ga0070763_109417541	3300005610	Soil	VCDALAYLSCDAFELAHARQTDSELEAGGSNGAGIFAEELAWLRVASEVLDSRRN*
Ga0070766_100862361	3300005921	Soil	LATWNEVREALAYSSRDPFEPVRARGADIELEVEVDVGNGVGILREELAWMRLANEALDSKLN*
Ga0075015_1001878894	3300006102	Watersheds	MESSVGLDHVATWIEVQDALAALTRETSQLVSVRDGEVELEVDVSSGAGFLSEELAWMRIAEEALDSRLN*
Ga0070716_1005523552	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	METCVRLDRLATWNEVCDALGYLSRDAFELAHAREAEGELEDRRSNGVDILCEELAWLRIANEVLDCRLN*
Ga0073928_102711603	3300006893	Iron-Sulfur Acid Spring	MESSVRLDHLATWNEVRDALEALTREAFELVAVHDGEVELEVDVSSGVGFLSEELAWLRIANEAMDTRLN*
Ga0126345_10461893	3300010858	Boreal Forest Soil	MQSSIRLDHLATWNEVREALAYSTRDPFEPVRARGADIELQVEVDAGNGVGILREELAWMRLANEALDSKLN*
Ga0126352_10078673	3300010859	Boreal Forest Soil	MQSSIRLDHLATWNEVREALAYSTRDPVKPVRARGADIELQVEVDAGNGVGILREELAWMRLANEALDSKLN*
Ga0126350_100199891	3300010880	Boreal Forest Soil	MQSSIRLDHLATWNEVREALAYSTRDPVKPVRARGAEIELEVEVDAGNGVGILREELAWMRLANEALDSKLN*
Ga0150983_115187622	3300011120	Forest Soil	MESSVRLDHLATWNEVRDALAALTREAFQLVTVRDGEVELEVDVGSGVGFLSEELAWLRIANEALDSRLN*
Ga0150983_126217692	3300011120	Forest Soil	MESSVRLDHLATWNEVRDALAYASRDAFGLVRARGADIELQVDVSNGGGILCEELAWLRIANEALDSKLN*
Ga0150983_130435644	3300011120	Forest Soil	MESSVRLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGLGFLSEELAWLRIANEALDSRLN*
Ga0150983_149645812	3300011120	Forest Soil	MESSVRLDHLATWNEVRDALATLTREAFQLVTVREGEVELEVDVSSGVGILSEELAWLRIAKEALDSRFN*
Ga0150983_155280981	3300011120	Forest Soil	METCVRLDHLATWNEVCDALAYLSRDAFELAHAREAEGELEEHGSNGVDILGEELAWLRVANEVLDCRLN*
Ga0153915_101229454	3300012931	Freshwater Wetlands	MKSAVRLDHLATWNEVCDALAYLSRDAFELVCARDADMELEADVSNGVSILCEELAWLRVGTEALDSWLN*
Ga0164303_112320462	3300012957	Soil	WNEVCDALAYLSRDAFKLALAREAGGQLEEGRSNCVGILGEELDWLRVAKEVLDSRLN*
Ga0181531_100010648	3300014169	Bog	MEISVQLDHLATWNEVREALASESRDAFEPIRPRGAEIELQVDICNDTGARSEELAWLRLANEALDSRPN*
Ga0210407_1000590210	3300020579	Soil	MESSVRLDHLATWNEVRDALAYASRDAFELVRARGADIELQVDVSNGVGILCEELAWLRIANEALDSKLN
Ga0210407_101145105	3300020579	Soil	MASSGRNALVVTTLGLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEAMDSRLN
Ga0210403_100016029	3300020580	Soil	MESSGRLDHLATWNEVRDALAALTQEAFQLVSVRDGEVELEVDVSSGVGFLSEELAWLRIANEAMDSRLN
Ga0210403_101640592	3300020580	Soil	MESSVRLDHLATWNEVRDALAYSSRDAFELVRARGAGIELQVDVRNGVGILCEELAWLRIANEALDSKLN
Ga0210403_103001572	3300020580	Soil	MMESSVQLDHIATWNEVRDALEYSSRDAFELLPARDGDVELKFDLSSGVGCLSEDLAWLRVAREALDSRSN
Ga0210403_106854472	3300020580	Soil	MESSVRLDHLATWNEVRDALAALTREAFQLVTVRDGEVELEVDVGSGMGFLSEELAWLRIANEALDSRLN
Ga0210399_102171172	3300020581	Soil	MESRVWLDHLATWNEVCDALAYLSCDAFELAHARQTDSELEAGGSNGAGIFAEELAWLRVASEVLDSRRN
Ga0210399_107263052	3300020581	Soil	MESSVRLDHLATWNEVRDALAALTREAFELVTVRDGEVELEVDVSSGLGFLSEELAWLRIANEALDSRLN
Ga0210395_1000006362	3300020582	Soil	MMESSVQLDHIATWNEVRDALEYSSRDAFDLLPARDGDVELKFDLSSGVGCLSEDLAWLRVAREALDSRSN
Ga0210395_1000045115	3300020582	Soil	MESSVRLDHLATWNEVRDALAYASRDAFGLVRARGADIELQVDVSNGGGILCEELAWLRIANEALDSKLN
Ga0210401_100744913	3300020583	Soil	MQSSVRLDHLATWNEVREALAHSTRDPFEPVRARGADIELEVEVDVRNGVSLLREEVAWMRLANEALDSKLN
Ga0210401_101206162	3300020583	Soil	MERCVRLDHLATSNEVCDALSYLSREAFELAHAHEVDGEFEDGRSDAVGSLSEELAWLRVANEVLDSWLN
Ga0210405_100071296	3300021171	Soil	MQSAFRLDRLATWNEICDALAYLSRDALELVHAREADGELKVAIRNSVGVLSEELAWLRIANEALDSRLN
Ga0210405_106065703	3300021171	Soil	MESSVRLDHLATWNEVRDALAALTREAFQLASVRDGEVELEVDVSSGMGFLSEELAWLRIANEALDSRLN
Ga0210388_111973122	3300021181	Soil	MESSVRLDHLATWNEIRDALAYASRDAFELVRARGADIELQVDVSNGVGILCEELAWLRIANKALDSKLN
Ga0210393_1000001692	3300021401	Soil	MESSVQLDHIATWNEVRDALEYSSRDAFDLLPARDGDVELKFDLSSGVGCLSEDLAWLRVAREALDSRSN
Ga0210393_100313956	3300021401	Soil	MASSGRNALVVTTLGLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEARDSRLN
Ga0210393_104070662	3300021401	Soil	YSSRDPFEPVRARGADIELEIEVDVGDGVGILREELAWMRLANEALDSKLN
Ga0210387_1000221613	3300021405	Soil	MVESSIPLDHIATWSEVCDALAYSRRDASESVPAGGCDMEFAVDLNNGVGCLSEELAWFRVANEALDSRPN
Ga0210387_100177265	3300021405	Soil	MESSGRNALVVTTLGLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEAMDSRLN
Ga0210386_103417362	3300021406	Soil	MESSVRLDHLATWNEIRDALAYASRDAFELVRARGADIELQVDVSNGVGILCEELAWLRIANEALDSKLN
Ga0210383_100583214	3300021407	Soil	MESSGRNALVVTTLGLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEDLAWLRIANEARDSRLN
Ga0210383_114068763	3300021407	Soil	MESSVRLDHLATWNEVRDALAYSSRDAFELVRARGAGIELQVDVRNGVGILCEELAWLRIANEALDSKL
Ga0210394_101545654	3300021420	Soil	MESSGRLDHLATWNEVRDALAVLTREAFQLVTVREGEVELEVDVSSGVGFLSEDLAWLRIANEAMDSRLN
Ga0210384_100123851	3300021432	Soil	LDHLATWNEIRDALAYASRDAFELVRARGADIELQVDVSNGVGILCEELAWLRIANKALDSKLN
Ga0210391_100791984	3300021433	Soil	MESSVQLDHIATWNEVRDALEYSSRDAFELLPARDGDVELKFDLSSGVGCLSEDLAWLRVAREALDSRSN
Ga0210391_110695301	3300021433	Soil	MESSVRLDHLATWNEVRDALATLTREAFQLVTVREGEVELEVDVSSGVGFLSEELAWLRIANEAMDSRLN
Ga0210390_100202044	3300021474	Soil	MESSVRLDHLATWNEVRDALAYASRDAFELVRARGADIELQVDVSNGVGILCEELAWLRIANKALDSKLN
Ga0210398_115132332	3300021477	Soil	HLATWNEVRDALAYASRDAFELVRARGADIELQVDVSNGVGILCEELAWLRIANEALDSKLN
Ga0210402_118875591	3300021478	Soil	MEPCVRLDHLATWRELSDALAYLSRDAFELSHARASDRELEDRANNGMTILAEELAWLRVANEVWNCRL
Ga0210410_103380742	3300021479	Soil	MERCVRLDHLATSNEVCDALSYLSREAFELAHAHEVDGEFEDGRSNAVGILSEELAWLRVANEVLDSWLN
Ga0247694_10011986	3300024178	Soil	MKNGVRSDHLTTWNEVCDALAYLSRDDFELIRARDADMELEADVSNGVHILCEELAWLRVGNEALDSWLN
Ga0247669_100025517	3300024182	Soil	METCVRLDHLTTWKELCDALAYLSRDGSERPQAREADSELDDRLSNGVAILGEELAWLRVANEALNCRLN
Ga0247679_10280723	3300024251	Soil	ALAYLSRDDFELIRARDADMELEADVSNGVHILCEELAWLRVGNEALDSWLN
Ga0247667_10345533	3300024290	Soil	MKSAVRLDHLATWNEVCDALAYLTRDAFELGCARGADLELEADASNRVSILCEELAWLRVGNEALDTWLN
Ga0247666_10277801	3300024323	Soil	CVRLDHLTTWKELCDALAYLSRDGFELSRAREGDSELDDRLSNGVAILGEELAWLRVANEALNCRLN
Ga0207652_112015021	3300025921	Corn Rhizosphere	WNEVCDALAYLSRDAFELVRARDADIEMEADFGNGVEVLCEELAWLRVGNEALDSWLN
Ga0207700_111736572	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VMETCVRLEHLATRNEVCDALGYLSRDAFELAHAREAEGELEDRRSNGVDILCEELARLRIANEFWIAG
Ga0209735_10271872	3300027562	Forest Soil	MESFVRLDHLATWNEIYDALAHLSRDAFELAHAHETDGELEDGGSNGVGILGEELAWLRVANEVVDCRLN
Ga0209527_10974442	3300027583	Forest Soil	HLATWNEVCDALAYLSRDAFELAHAHETDGELEDGGSNGVGILGEELAWLRVANEVVDCRLN
Ga0209422_11469671	3300027629	Forest Soil	METCVRLDHLATWNEVCDALGYLSRDAFELAHARDAEGELEDHGSNGLGILGEELAWLRVANEVLDCRLN
Ga0209811_100646252	3300027821	Surface Soil	MKSAVRLDHLATWNEVCDALAYLSRDAFELVRSRDADIELEADVSNGVDVLCEELAWLRVGNEALDSWLN
Ga0209274_100131154	3300027853	Soil	MEIFVQLDHLATWNEVREALASESRDALELVRPRGAEIELEVDICSGTGVLSEELAWLRLANEALDSRPN
Ga0209693_102723372	3300027855	Soil	MESSTRLDHLATWNEVCDALAYLSCDAFELAHARQTDSELEAGGSNGAGIFAEELAWLRVASEVLDSRRN
Ga0209166_100263387	3300027857	Surface Soil	MKSAVRLDHLATWNEVCDALAYLSRDAFEPGCARDTVVELEAEGSNRMSILCEELAWLRVGNEALDSWLN
Ga0209275_101329223	3300027884	Soil	MHSSVRLDHLATWNEVREALAYSSRDPFEPVRARGADIELEVEVDVGNGVGILREELAWMRLANEALDSKLN
Ga0209275_108063361	3300027884	Soil	MVESSIQLDHIATWNEVRDALEYSSRDAFQLLPARDGDVELNIDLSNGVGCLSEELAWLRVAKEALDSRSNYP
Ga0209275_108389322	3300027884	Soil	MQSSIRLDHLATWNEVCDALAYLSRDALELVHAREADGELNVAVSNGVGTLSEELAWLRIANEALDSSLN
Ga0209006_100242253	3300027908	Forest Soil	MHSSVQLDHLATWNEVREALAYSSRDPFEPVRARGADIELEIEVDVGDGVGILREELAWMRLANEALDSKLN
Ga0209526_109504431	3300028047	Forest Soil	TFSPGAQNGNLGGRAMESSVRLDHLATWNEVRDALAALTREAFQLVSVRDGEVELEVDVSSGVGFLSEELAWLRIANEAIDSRSN
Ga0247684_10237893	3300028138	Soil	MKSAVRLDHLATWNEVCDALAYLSRDAFELVCAREADIELEPDVSNGVDNLCEELAWLRVGNEALDSWLN
Ga0265319_11611852	3300028563	Rhizosphere	MEIFVHLDHLATWNEIREALACAPRDALELVRPREDIALQVDICSGEGSLSEELAWLRLASEALDSRSN
Ga0308309_100206154	3300028906	Soil	MESSTRLDHLATWNEVCDALAYLSRDALELVHAREAGGELTVAISNGVGTLSEELAWLRIANEALDSSLN
Ga0074032_109162502	3300030800	Soil	MESSVRLDHLATWNEIRDALAYSSRDASELVRARGADIELQVDVSNGVGILCEELAWLRIANEALDSKLN
Ga0074036_108918491	3300031049	Soil	MESAVQLDHLATWNEVRDALAALTREAFQLVAVHDGEVELEVDVSSGVGFVSEELAWLRIANEALDSRFN
Ga0307478_100014169	3300031823	Hardwood Forest Soil	MESSVRLDHLATWNEIRDALAYASRDAFELVRTRGADIELQVDVSNGVGILCEELAWLRIANKALDSKLN
Ga0307478_117726981	3300031823	Hardwood Forest Soil	LVMHSSVRLDHLATWNEVREALAYSSRDPFEPVRARGVDIELEIEVDVGDGVGILREELAWMRLANEALDSKLN
Ga0315742_102701753	3300032756	Forest Soil	MQSSIRLDHLATWNEVREALAYSTRDPFEPVRARGADIELQVEVDAGNGVGILREELAWMRLANEALDSKLN
Ga0316620_108994111	3300033480	Soil	MKSAIRLDHLATWNEVCNALAYLSRDAFELGCARDADVELEADVSNRVSILCEELAWLRVGNEALDSWLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087650

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences