Metagenome / Metatranscriptome Family F087656

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087656
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	61 residues
Representative Sequence	MPKSDDERENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIGAIAVIYVILHFLFKYW
Number of Associated Samples	83
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	40.37 %
% of genes near scaffold ends (potentially truncated)	37.27 %
% of genes from short scaffolds (< 2000 bps)	95.45 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (72.727 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.364 % of family members)
Environment Ontology (ENVO)	Unclassified (40.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.56% β-sheet: 0.00% Coil/Unstructured: 60.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13467	RHH_4	8.18
PF09361	Phasin_2	1.82
PF00550	PP-binding	0.91
PF13340	DUF4096	0.91
PF01264	Chorismate_synt	0.91
PF02586	SRAP	0.91
PF13474	SnoaL_3	0.91
PF06411	HdeA	0.91
PF14534	DUF4440	0.91
PF13578	Methyltransf_24	0.91
PF13424	TPR_12	0.91
PF13936	HTH_38	0.91
PF13683	rve_3	0.91
PF11306	DUF3108	0.91
PF02074	Peptidase_M32	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0082	Chorismate synthase	Amino acid transport and metabolism [E]	0.91
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.91
COG2317	Zn-dependent carboxypeptidase, M32 family	Posttranslational modification, protein turnover, chaperones [O]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
All Organisms	root	All Organisms	27.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
cellular organisms	root	All Organisms → cellular organisms	27.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	27.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.27 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.55 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.73 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.82 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.82 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.91 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.82 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.91 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.91 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.82 %
Bradyrhizobium sp. AS23.2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AS23.2	0.91 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.91 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.91 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10088452	Not Available	785	Open in IMG/M
3300002245\|JGIcombinedJ26739_100051625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3744	Open in IMG/M
3300003505\|JGIcombinedJ51221_10422772	Not Available	540	Open in IMG/M
3300004092\|Ga0062389_103306067	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005332\|Ga0066388_102320852	Not Available	971	Open in IMG/M
3300005336\|Ga0070680_101998566	Not Available	502	Open in IMG/M
3300005367\|Ga0070667_101962970	Not Available	551	Open in IMG/M
3300005437\|Ga0070710_11124836	Not Available	578	Open in IMG/M
3300005610\|Ga0070763_10298785	Not Available	885	Open in IMG/M
3300005764\|Ga0066903_101245258	All Organisms → cellular organisms → Bacteria → Proteobacteria	1385	Open in IMG/M
3300005764\|Ga0066903_101574347	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300005764\|Ga0066903_104508954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	743	Open in IMG/M
3300005764\|Ga0066903_107389700	Not Available	567	Open in IMG/M
3300005764\|Ga0066903_108516527	Not Available	523	Open in IMG/M
3300005764\|Ga0066903_108680165	Not Available	517	Open in IMG/M
3300005764\|Ga0066903_108773151	Not Available	513	Open in IMG/M
3300005921\|Ga0070766_11286790	Not Available	507	Open in IMG/M
3300006173\|Ga0070716_100369781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300006174\|Ga0075014_100031175	Not Available	2154	Open in IMG/M
3300006175\|Ga0070712_101958612	Not Available	513	Open in IMG/M
3300006904\|Ga0075424_102142851	Not Available	589	Open in IMG/M
3300009522\|Ga0116218_1032649	All Organisms → cellular organisms → Bacteria	2344	Open in IMG/M
3300009522\|Ga0116218_1045185	All Organisms → cellular organisms → Bacteria	1991	Open in IMG/M
3300009700\|Ga0116217_10518583	Not Available	748	Open in IMG/M
3300010360\|Ga0126372_11860601	Not Available	646	Open in IMG/M
3300010366\|Ga0126379_11581830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	761	Open in IMG/M
3300010366\|Ga0126379_13699489	Not Available	512	Open in IMG/M
3300010376\|Ga0126381_102165786	Not Available	800	Open in IMG/M
3300010376\|Ga0126381_104948720	Not Available	511	Open in IMG/M
3300010376\|Ga0126381_105091948	Not Available	503	Open in IMG/M
3300010379\|Ga0136449_100606858	Not Available	1863	Open in IMG/M
3300010398\|Ga0126383_10767019	Not Available	1046	Open in IMG/M
3300010398\|Ga0126383_11132120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	872	Open in IMG/M
3300012955\|Ga0164298_10938419	Not Available	633	Open in IMG/M
3300012958\|Ga0164299_10049878	Not Available	1950	Open in IMG/M
3300012984\|Ga0164309_11063279	Not Available	671	Open in IMG/M
3300015372\|Ga0132256_103504908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	527	Open in IMG/M
3300016270\|Ga0182036_11553493	Not Available	556	Open in IMG/M
3300016294\|Ga0182041_10341749	All Organisms → cellular organisms → Bacteria → Proteobacteria	1255	Open in IMG/M
3300016357\|Ga0182032_10139257	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300016357\|Ga0182032_10673018	Not Available	867	Open in IMG/M
3300016422\|Ga0182039_11300639	Not Available	659	Open in IMG/M
3300016445\|Ga0182038_12098247	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300017943\|Ga0187819_10412020	Not Available	776	Open in IMG/M
3300017970\|Ga0187783_10202391	Not Available	1458	Open in IMG/M
3300017970\|Ga0187783_10497194	Not Available	884	Open in IMG/M
3300017970\|Ga0187783_10893531	Not Available	640	Open in IMG/M
3300017974\|Ga0187777_10230892	Not Available	1252	Open in IMG/M
3300017995\|Ga0187816_10266299	Not Available	749	Open in IMG/M
3300018062\|Ga0187784_11105468	Not Available	629	Open in IMG/M
3300020579\|Ga0210407_10292322	Not Available	1272	Open in IMG/M
3300020580\|Ga0210403_10178399	Not Available	1741	Open in IMG/M
3300020580\|Ga0210403_10954934	Not Available	673	Open in IMG/M
3300021088\|Ga0210404_10793128	Not Available	541	Open in IMG/M
3300021171\|Ga0210405_10651885	Not Available	817	Open in IMG/M
3300021180\|Ga0210396_10366587	Not Available	1269	Open in IMG/M
3300021181\|Ga0210388_10577859	All Organisms → cellular organisms → Bacteria → Terrabacteria group	984	Open in IMG/M
3300021181\|Ga0210388_11263847	Not Available	624	Open in IMG/M
3300021401\|Ga0210393_10268897	Not Available	1383	Open in IMG/M
3300021401\|Ga0210393_11234492	Not Available	601	Open in IMG/M
3300021403\|Ga0210397_10509184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300021404\|Ga0210389_11107517	Not Available	612	Open in IMG/M
3300021405\|Ga0210387_10739082	Not Available	871	Open in IMG/M
3300021405\|Ga0210387_10999670	Not Available	733	Open in IMG/M
3300021406\|Ga0210386_10064481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	2935	Open in IMG/M
3300021407\|Ga0210383_10768219	Not Available	826	Open in IMG/M
3300021407\|Ga0210383_11775873	Not Available	503	Open in IMG/M
3300021474\|Ga0210390_11313496	Not Available	579	Open in IMG/M
3300021477\|Ga0210398_10568512	Not Available	922	Open in IMG/M
3300021477\|Ga0210398_11350268	Not Available	559	Open in IMG/M
3300021478\|Ga0210402_10293309	Not Available	1505	Open in IMG/M
3300021478\|Ga0210402_11881516	Not Available	524	Open in IMG/M
3300021479\|Ga0210410_10654164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	930	Open in IMG/M
3300021560\|Ga0126371_11568924	Not Available	785	Open in IMG/M
3300022532\|Ga0242655_10190107	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300022557\|Ga0212123_10172064	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300025915\|Ga0207693_11278373	Not Available	550	Open in IMG/M
3300025932\|Ga0207690_10236917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1404	Open in IMG/M
3300025939\|Ga0207665_10339155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1132	Open in IMG/M
3300025972\|Ga0207668_10750728	Not Available	861	Open in IMG/M
3300026088\|Ga0207641_12129585	Not Available	562	Open in IMG/M
3300026998\|Ga0208369_1022011	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300027069\|Ga0208859_1029041	Not Available	638	Open in IMG/M
3300027173\|Ga0208097_1042192	Not Available	530	Open in IMG/M
3300027567\|Ga0209115_1151488	Not Available	519	Open in IMG/M
3300027604\|Ga0208324_1044591	Not Available	1304	Open in IMG/M
3300027604\|Ga0208324_1125278	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300027889\|Ga0209380_10487364	Not Available	719	Open in IMG/M
3300027894\|Ga0209068_10503640	Not Available	698	Open in IMG/M
3300027895\|Ga0209624_10489211	Not Available	819	Open in IMG/M
3300027898\|Ga0209067_10611308	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
3300027915\|Ga0209069_10393160	Not Available	758	Open in IMG/M
3300031573\|Ga0310915_10965462	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300031718\|Ga0307474_10393624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300031719\|Ga0306917_10790081	Not Available	745	Open in IMG/M
3300031719\|Ga0306917_11515960	Not Available	516	Open in IMG/M
3300031724\|Ga0318500_10705071	Not Available	515	Open in IMG/M
3300031744\|Ga0306918_11295394	Not Available	561	Open in IMG/M
3300031941\|Ga0310912_10574373	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300031942\|Ga0310916_10541549	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300031946\|Ga0310910_10779319	Not Available	754	Open in IMG/M
3300031954\|Ga0306926_10668112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AS23.2	1263	Open in IMG/M
3300031954\|Ga0306926_11236046	Not Available	876	Open in IMG/M
3300031954\|Ga0306926_11463954	Not Available	790	Open in IMG/M
3300031954\|Ga0306926_11662694	Not Available	730	Open in IMG/M
3300032001\|Ga0306922_11557886	Not Available	659	Open in IMG/M
3300032076\|Ga0306924_11595342	Not Available	688	Open in IMG/M
3300032160\|Ga0311301_10765604	Not Available	1337	Open in IMG/M
3300032261\|Ga0306920_103616723	Not Available	569	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.55%
Host-Associated	Host-Associated	5.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.27%
Aquatic	Environmental → Aquatic	7.27%
Plants	Host-Associated → Plants	5.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.55%
Sediment	Environmental → Aquatic → Sediment	3.64%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.00%
Loam	Environmental → Terrestrial → Soil → Loam	22.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.73%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.27%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.36%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100884521	3300001471	Forest Soil	MSKPDHEREPSAPEIPENLVERFAPRSRDPVVVMGGHLLQIIGAIAVLYVIFHFVEKY
JGIcombinedJ26739_1000516253	3300002245	Forest Soil	MSKPDHEREPSAPEIPENLVERFAPRSRDPVVVMGGHLLQIIGAIAVLYVIFHFVEKYW*
JGIcombinedJ51221_104227722	3300003505	Forest Soil	MPKSDHEREDPVEPSAAKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIYIVLHFLFKYW*
Ga0062389_1033060671	3300004092	Bog Forest Soil	MANSDNERKRPVEPSSPKIPEYLVERLAPLSRDPVVIFGGHLLQLVGAITVIYVIF
Ga0066388_1023208521	3300005332	Tropical Forest Soil	MSKSDDERQDPVEPSTARIPEYLVERLAPHSRDPTIIFGGHLLQVIGAIVVIYVVLHFLFKYW*
Ga0070680_1019985661	3300005336	Corn Rhizosphere	MPKSDHEREDPVEPSAAKIPDYLADRLAPLSRDPVVIFGGHLLQVIGAIAVIYVIFHFLYKYW*
Ga0070667_1019629701	3300005367	Switchgrass Rhizosphere	VFRPQSDHEREDPVEPPAAKIPDYLADRLAPLSRDPVVIFGGHLLQLIGAIAIIYVVLHFLYKYW*
Ga0070710_111248361	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW*
Ga0070763_102987852	3300005610	Soil	MPKSEDAREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW*
Ga0066903_1012452582	3300005764	Tropical Forest Soil	MTQSDDELEKIVEKTSPKIPEYLVEWFAPHSRHQTVIFGGHLLQIVGAIVIIYVILHFIEKYW*
Ga0066903_1015743475	3300005764	Tropical Forest Soil	MMSALQGVECQSQTTARENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIGAIAVIYVILHFL
Ga0066903_1045089542	3300005764	Tropical Forest Soil	MPKSDHEREDPVEPSVAKIPEYLMERLAPHSRDPVVTFGGHLLQLIGAIAVIYVILHFL
Ga0066903_1073897001	3300005764	Tropical Forest Soil	MSKSDDERQDPVEPSTARIPEYLVERLAPNSRDPTIIFGGHLLQVIGAIVVIYVVLHFLLKYW*
Ga0066903_1085165271	3300005764	Tropical Forest Soil	MPSPDQERENPAEPSAGKVREIPEHLVERFAPVSRDPVVVFGGHLLQLVGAIAILFIIFHFLEKYW*
Ga0066903_1086801651	3300005764	Tropical Forest Soil	MPKPDSEREDPVEPSAAEIPDYLVEMFAPRSRDPVVIFGGHLLQLIGAIAIIYVALHFLYKYW*
Ga0066903_1087731511	3300005764	Tropical Forest Soil	MSKSDDERQDPVEPSTARIPEYLVERLAPNSRDPTIIFGGHLLQVIGAIVVIYVVLHFLFKYW*
Ga0070766_112867902	3300005921	Soil	MPKSEDEREDPPEPSSANVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW*
Ga0070716_1003697813	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW*
Ga0075014_1000311751	3300006174	Watersheds	MPKSDDEREDPVDPSAPKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAIAVIIVILHFLDKY
Ga0070712_1019586121	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSDHEREDPVEPSAAKIPDYLADRLAPLSRDPVVIFGGHLLQLIGAIAIIYVVLHFLYKYW*
Ga0075424_1021428511	3300006904	Populus Rhizosphere	LREGRRRVFRPQSDHEREDPVEPPAAKIPDYLADRLAPLSRDPVVIFGGHLLQLIGAIAIIYVVLHFLYKYW*
Ga0116218_10326494	3300009522	Peatlands Soil	MPKSEDEREGTVEPSAAKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIWVILHFLDKYW*
Ga0116218_10451854	3300009522	Peatlands Soil	MPKSDHEREDDPVYPSAAKIPEYLVERLAPRSRDPVVIFGGHLLQLIGGIAVIYTVLHFLFKYW*
Ga0116217_105185832	3300009700	Peatlands Soil	MPKSDHEREDDPVYPSAAKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAIAVIYTVLHFLFKYW*
Ga0126372_118606011	3300010360	Tropical Forest Soil	MSKSDDKRQDPVEPSTARIPEYLVERLAPHSRDPTIIFGGHLLQVIGAIVVIYVVLHFLFKYW*
Ga0126379_115818302	3300010366	Tropical Forest Soil	MPKSDDERENPVEPSVAKIPEYLMERLAPHSRDPVVIFGGHLLQLIGAIAVIYVILHFLFKYW*
Ga0126379_136994891	3300010366	Tropical Forest Soil	SDQERENPGEPSASKVREIPEHLVERFAPVSRDPVVVFGGHLLQLIGAIAILFIIFHFLEKYW*
Ga0126381_1021657862	3300010376	Tropical Forest Soil	MPKSDYERENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIGAIAVIYVILHFLFK*
Ga0126381_1049487202	3300010376	Tropical Forest Soil	MPSPDQERENPAEPSAEKVREIPEHLVERFAPVSRDPVVVFGGHLLQLVGAIAILFIIFHFLEKYW*
Ga0126381_1050919481	3300010376	Tropical Forest Soil	MPKSDDQREDPVEPSEAKIPEYLVERLAPQSRDPVVVFGGHLLQLIGAVAIIYVIFHFLYKYW*
Ga0136449_1006068582	3300010379	Peatlands Soil	MQKSEDEREDTVEPSAAKIPEYLVERLAPLSRDQVVIFGGHLLQLIGAIAVIYVILHFLYKYW*
Ga0126383_107670192	3300010398	Tropical Forest Soil	MPKPDDEREDPVEPSAAKIPEYLVERFSPRSQDPVVVFGGHLLQVIGAIAV
Ga0126383_111321201	3300010398	Tropical Forest Soil	EREDPVEPSVAKIPEYLMERLAPHSRDPVVIFGGHLLQLIGAIAVIYVILHFLFKYW*
Ga0164298_109384192	3300012955	Soil	MPKSDHEREDPVEPSAAKIPEYLVEKLAPRSRDQVVIFGGHLLQLIGAIAVIYIVL
Ga0164299_100498781	3300012958	Soil	KSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYDIIHFLYKYW*
Ga0164309_110632791	3300012984	Soil	MPKSEDEREDPTEPSSANVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW*
Ga0132256_1035049081	3300015372	Arabidopsis Rhizosphere	MPNSDQEEEKPAERSAREIPEHLVERFAPRSRDPVVVFGGHLLQIVGAIAILFVIFHFLEKYW*
Ga0182036_115534931	3300016270	Soil	MSKSDDERQDPVEPSTARIPEYLVERLAPQSRDPTIIFGGHLLQLIGAIVVIYVVLHFLLKYW
Ga0182041_103417493	3300016294	Soil	MPKSDHERKDPVEPSVAKIPEYLVERLAPRSRDPVVVFGGHLLQLIGAIAVIYVIFHFLY
Ga0182041_106332342	3300016294	Soil	MPKSDNEREEPIGPSTANIPEYIVERLAPHSRDPVVIFGGHLLQLIGAIT
Ga0182032_101392572	3300016357	Soil	MPKSDYERENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIGAIAVIYVILHFLFKYW
Ga0182032_106730181	3300016357	Soil	MPNPDDERENPIEQPPATIPEHPKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAITVIYVILHFLDKYW
Ga0182039_113006391	3300016422	Soil	MPKPDSEREDPVEPSAAEIPDYLVEMFAPRSRDPVVIFGGHLLQLIGAIAIIYVALHLLYKYW
Ga0182038_120982471	3300016445	Soil	MPKSDYERENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIGAIAVIYVILHFLFKY
Ga0187819_104120202	3300017943	Freshwater Sediment	MPKSEDEREDTVEPSAAKIPEYLVERLAPRSWDQVVIFGGHLLQLIGAIAVIYVILHFLFKYW
Ga0187783_102023912	3300017970	Tropical Peatland	MPKSDDERENPVEASSAKIPEYLVQRLAPLSQDPVVIFGGHLLQIIGAAIFHFIEKYW
Ga0187783_104971941	3300017970	Tropical Peatland	MSKPDHEREEPIKPSADIPEHLVERFAPVSRDPIVVFGGHLLQIVGALAILFLILHFLEKYW
Ga0187783_108935311	3300017970	Tropical Peatland	PNPDDERENPIERSPATIPEHPKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAITVIYVILHFLDKYW
Ga0187777_102308923	3300017974	Tropical Peatland	MPKSDNDREEPIGPSTANIPEYIVERLAPHSRDPVVIFGGHLLQLIGAITVIYVILHFLFKYW
Ga0187816_102662992	3300017995	Freshwater Sediment	MPKSDDKREDTVEPKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIYVVLHFLFKYW
Ga0187784_111054681	3300018062	Tropical Peatland	MSKPDHEREEPIKPSADIPEHLVERFAPVSRNPVVVFGWHLLQIVGAIAIIFIIFHFVEKYW
Ga0210407_102923221	3300020579	Soil	MPKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW
Ga0210403_101783994	3300020580	Soil	MPKSDHEREDPVEPSAAKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIYIVLHFLFKYW
Ga0210403_109549342	3300020580	Soil	MPNPDDERENPIEQSPAKIPEHPKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAITVIYVILHFLDKYW
Ga0210404_107931282	3300021088	Soil	MPKSEDEREDPPEPSSANVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVI
Ga0210405_106518851	3300021171	Soil	MPKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIIFHFLYKY
Ga0210396_103665871	3300021180	Soil	MPKSEDEREDTVQPSAAKIPEYLVERLAPRSRDQVVILGGHLLQLIGAIAIIWV
Ga0210388_105778592	3300021181	Soil	MSKPDHEGEPSAAEIPEDLVERFAPRSRDPVVVLGGHLLQIIGAIAVLYVVFHF
Ga0210388_112638471	3300021181	Soil	MPKPDDEREAPVDSSAPKIPEDPKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIIVILHFLDKYW
Ga0210393_102688971	3300021401	Soil	HEREDPVEQSAAKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIYIVLHFLFKYW
Ga0210393_112344922	3300021401	Soil	MSKPDHEGEPSAAEIPEDLVERFAPRSRDPVVVLGGHLLQIIGAIAVLYVIFHFVEKYW
Ga0210397_105091842	3300021403	Soil	MPKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVI
Ga0210389_111075171	3300021404	Soil	MPKSEDEREDPIEPSAAKIPEYLVERLAPRSRDQVVIFGGHLLKLIGAIAVICVILHFLYKYW
Ga0210387_107390822	3300021405	Soil	DEREAPVDSSAPKIPEDPKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIIVILHFLDKYW
Ga0210387_109996702	3300021405	Soil	MPKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHLLYKY
Ga0210386_100644812	3300021406	Soil	MSKPDHEREPSAPEIPENLVERFAPRSRDPVVVMGGHLLQIIGAIAVLYVIFHFVEKYW
Ga0210383_107682191	3300021407	Soil	MPKPDDEREAPVDSSAPKIPEDLKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIIVILHFLDKYW
Ga0210383_117758731	3300021407	Soil	MPNPDDERENPIEQSPANIPEHPKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAITVI
Ga0210390_113134961	3300021474	Soil	MPKSEDEREDPPEPSSANVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLY
Ga0210398_105685123	3300021477	Soil	PPEPSSAKVPEHLVERFAPHSRNPVVILGGHLLQLIGAIAVIYVIFHFLYKYW
Ga0210398_113502682	3300021477	Soil	MPKSEDEREDPPEPSSAKVPEHLVERFAPHSRNPVVILGGHLLQLIGAIAVIIF
Ga0210402_102933092	3300021478	Soil	MPKSEDEREDTVQPSAAKIPEYLVERLAPRSRDHVVVFGGHLLQLIGAIAIIWVILHFLTKYW
Ga0210402_118815162	3300021478	Soil	MPKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIY
Ga0210410_106541642	3300021479	Soil	MPKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIF
Ga0126371_115689241	3300021560	Tropical Forest Soil	MSKSDDERQDPVEPSTARIPEYLVERLAPHSRDPTIIFGGHLLQVIGAIVVIYVVLHFLLKYW
Ga0242655_101901071	3300022532	Soil	THMPKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYIVLHFLFKYW
Ga0212123_101720641	3300022557	Iron-Sulfur Acid Spring	MPKSDDEREDTVEPSAAKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIYVILLA
Ga0207693_112783731	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSDHEREDPVEPSAAKIPDYLADRLAPLSRDPVVIFGGHLLQLIGAIAIIYVVLHFL
Ga0207690_102369172	3300025932	Corn Rhizosphere	MPKSDHEREDPVEPSAAKIPDYLADRLAPLSRDPVVIFGGHLLQVIGAIAVIYVIFHFLYKYW
Ga0207665_103391551	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRKSEDEREDPPEPSSAKVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW
Ga0207668_107507281	3300025972	Switchgrass Rhizosphere	MPKSDHEREDPVEPSAAKIPDYLADRLAPLSRDPVVIFGGHLLQVIGAIAVIYVIFHFLY
Ga0207641_121295851	3300026088	Switchgrass Rhizosphere	MPNSDQERERPVERSATQIPEHLVERFAPRSRDPVVVFGGHLLQIVGAIAILFVIFHFVERS
Ga0208369_10220111	3300026998	Forest Soil	PEPSSANVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW
Ga0208859_10290411	3300027069	Forest Soil	MMQHMPKSEDEREDPPEPSSANVPEHLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW
Ga0208097_10421921	3300027173	Forest Soil	MPKSEDEREDRVQPSAAKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIYIVLHFLFKYW
Ga0209115_11514881	3300027567	Forest Soil	MSKPDHEREPSAPEIPENLVERFAPLSRDPVVILGGHLLQLIGAIAVIYVIFHFLYKYW
Ga0208324_10445913	3300027604	Peatlands Soil	MPKSEDEREGTVEPSAAKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIWVILHFLDKYW
Ga0208324_11252781	3300027604	Peatlands Soil	MPKSDHEREDDPVYPSAAKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAIAVIYTVLHFLFKYW
Ga0209380_104873642	3300027889	Soil	MPKSEDEREDRVQPSAAKIPEYLVERLAPRSRDQVVILGGHLLQLIGAIAVIWVILHFLAKYW
Ga0209068_105036401	3300027894	Watersheds	MPKSDDEREDPVDPSAPKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAIAVIIVILHFLD
Ga0209624_104892112	3300027895	Forest Soil	MSKPDHEGEPSSAEIPEDLVERFAPRSRDPVVVLGGHLLQIIGAIAVLYVIFHFVEKYW
Ga0209067_106113082	3300027898	Watersheds	IDPTAPKIPEYLVERLAPLSRDPVTVFGGHLLQLIGVVAIIYVIVHFLHKYW
Ga0209069_103931602	3300027915	Watersheds	MPKSDDEREDPVDPSAPKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAIAVIIVILHFLDKYW
Ga0310915_109654622	3300031573	Soil	MPKSDDERENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQVIGAIAVIYIILHFLFKYW
Ga0307474_103936243	3300031718	Hardwood Forest Soil	VEPSAAKIPEYLVERLAPRSRDQVVIFGGHLLQLIGAIAVIYVILHFLFKYW
Ga0306917_107900812	3300031719	Soil	MPKPDSEREDPVEPSTAEIPDYLVEMFAPRSRDPVVIFGGHLLQLIGAIAVIYVILHFLFKYW
Ga0306917_115159601	3300031719	Soil	REDPVEPSVAKIPEYLVERLAPRSRDPVVVFGGHLLQLIGAITVIYVILHFLDKYW
Ga0318500_107050712	3300031724	Soil	HEREDPVEPSVAKIPEYLVERLAPRSRDPVVVFGGHLLQLIGAIAVIYVIFHFLYKYW
Ga0306918_112953942	3300031744	Soil	MPKSDDERENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIIAIAVIYVILHFLFKYW
Ga0310912_105743732	3300031941	Soil	MPKSDDERENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIGAIAVIYVILHFLFKYW
Ga0310916_105415492	3300031942	Soil	MPKPDSEREDPVEPSTAEIPDYLVEMFAPRSRDPVVIFGGHLLQLIGAIAIIYVVLHFLYKYW
Ga0310910_107793191	3300031946	Soil	MSKSDDERQDPVEPSTARIPEYLVERLAPHSRDPTIIFGGHLLQLIGAIVVIYVVLHFLLKYW
Ga0306926_106681122	3300031954	Soil	MPKSDDERENPLEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIGAIAVIYVILHFLFKYW
Ga0306926_112360461	3300031954	Soil	MPKSDNEREEPIGPSTANIPEYIVERLAPHSRDPVVIFGGHLLQLIGAITVIYVILHFLFKYW
Ga0306926_114639541	3300031954	Soil	MPKPDSEREDPVEPSAAEIPDYLVEMFAPRSRDPVVIFGGHLLQLIGAIAIIYVVLHFLYKYW
Ga0306926_116626941	3300031954	Soil	MPNPDDERENPIERSPATIPEHPKIPEYLVERLAPRSRDPVVIFGGHLLQLIGAITVIYVILHFLDKYW
Ga0306922_115578862	3300032001	Soil	DDERENPVEPSAAKVPEHLVERFAPLSRDPVVVFGGHLLQLIGAIAVIYVILHFLFKYW
Ga0306924_115953422	3300032076	Soil	MPKSDNEREEPIGPSTANIPEYIVERLAPHSRDPVVIFGGHLLQLIGAITVIYVVLHFLFKYW
Ga0311301_107656043	3300032160	Peatlands Soil	MDMPKSEDEREDPIEPSAAKIPEYLVERLAPLSRDQVVIFGGHLLQLIGAIAVIYVILHFLYKYW
Ga0306920_1036167231	3300032261	Soil	MSKSDDERKDPVAPSAAEIPEYLVDRLAPRSRDQVTVFGGHLLQLIGAVAVIIVIVHFLYKYW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087656

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences