Metagenome / Metatranscriptome Family F087704

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087704
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	88 residues
Representative Sequence	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDKRK
Number of Associated Samples	83
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.48 %
% of genes near scaffold ends (potentially truncated)	20.91 %
% of genes from short scaffolds (< 2000 bps)	77.27 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (16.364 % of family members)
Environment Ontology (ENVO)	Unclassified (34.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.93% β-sheet: 16.67% Coil/Unstructured: 61.40%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
g.39.1.12: PARP-type zinc finger	d1uw0a_	1uw0	0.54984
f.41.1.1: Preprotein translocase SecY subunit	d1rh5a_	1rh5	0.54478
a.93.1.1: CCP-like	d2vcna_	2vcn	0.52243
a.104.1.0: automated matches	d5m0na1	5m0n	0.51813
d.257.1.1: Hypothetical protein TM0160	d1o5ya1	1o5y	0.5169

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07238	PilZ	5.45
PF00072	Response_reg	1.82
PF01435	Peptidase_M48	1.82
PF01565	FAD_binding_4	1.82
PF03631	Virul_fac_BrkB	1.82
PF13193	AMP-binding_C	1.82
PF13660	DUF4147	0.91
PF02705	K_trans	0.91
PF05161	MOFRL	0.91
PF07045	DUF1330	0.91
PF04972	BON	0.91
PF00211	Guanylate_cyc	0.91
PF03107	C1_2	0.91
PF01590	GAF	0.91
PF01258	zf-dskA_traR	0.91
PF04909	Amidohydro_2	0.91
PF00691	OmpA	0.91
PF00480	ROK	0.91
PF09339	HTH_IclR	0.91
PF06439	3keto-disac_hyd	0.91
PF13534	Fer4_17	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.82
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.82
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.91
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.91
COG2379	Glycerate-2-kinase	Carbohydrate transport and metabolism [G]	0.91
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.91
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.55 %
Unclassified	root	N/A	5.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.55 %
Unclassified	root	N/A	5.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.55 %
Unclassified	root	N/A	5.45 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	80.00 %
Unclassified	root	N/A	5.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	80.00 %
Unclassified	root	N/A	5.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	79.09 %
Unclassified	root	N/A	5.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	74.55 %
Unclassified	root	N/A	5.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	74.55 %
Unclassified	root	N/A	5.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_3229453	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
2170459005\|F1BAP7Q01AIG6A	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300000550\|F24TB_11648126	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300000956\|JGI10216J12902_116030185	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	755	Open in IMG/M
3300001139\|JGI10220J13317_11485798	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	721	Open in IMG/M
3300002245\|JGIcombinedJ26739_100121138	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2463	Open in IMG/M
3300002245\|JGIcombinedJ26739_100536660	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1047	Open in IMG/M
3300002675\|Ga0005473J37261_105119	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	855	Open in IMG/M
3300003349\|JGI26129J50193_1008152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	759	Open in IMG/M
3300004139\|Ga0058897_10007129	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1154	Open in IMG/M
3300004139\|Ga0058897_11055444	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	654	Open in IMG/M
3300004156\|Ga0062589_100159261	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1563	Open in IMG/M
3300004157\|Ga0062590_101494786	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	677	Open in IMG/M
3300004463\|Ga0063356_100729043	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1369	Open in IMG/M
3300005289\|Ga0065704_10672143	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300005294\|Ga0065705_10593005	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	711	Open in IMG/M
3300005295\|Ga0065707_10270447	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1070	Open in IMG/M
3300005295\|Ga0065707_10497486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	730	Open in IMG/M
3300005341\|Ga0070691_10156065	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1173	Open in IMG/M
3300005440\|Ga0070705_100802445	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	749	Open in IMG/M
3300005457\|Ga0070662_100640181	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	896	Open in IMG/M
3300005467\|Ga0070706_100083652	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2957	Open in IMG/M
3300005467\|Ga0070706_100304224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1487	Open in IMG/M
3300005467\|Ga0070706_100343205	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1392	Open in IMG/M
3300005468\|Ga0070707_100046659	All Organisms → cellular organisms → Bacteria → Proteobacteria	4146	Open in IMG/M
3300005471\|Ga0070698_100068597	All Organisms → cellular organisms → Bacteria → Proteobacteria	3563	Open in IMG/M
3300005471\|Ga0070698_100281731	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1594	Open in IMG/M
3300005518\|Ga0070699_100681737	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	938	Open in IMG/M
3300005536\|Ga0070697_100168392	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1853	Open in IMG/M
3300005536\|Ga0070697_101732264	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300005536\|Ga0070697_101738406	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	558	Open in IMG/M
3300005549\|Ga0070704_100302057	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1334	Open in IMG/M
3300006172\|Ga0075018_10073592	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1470	Open in IMG/M
3300006845\|Ga0075421_100015670	All Organisms → cellular organisms → Bacteria	9465	Open in IMG/M
3300006845\|Ga0075421_100073837	All Organisms → cellular organisms → Bacteria	4303	Open in IMG/M
3300006847\|Ga0075431_100194385	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300007004\|Ga0079218_11189474	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	789	Open in IMG/M
3300007004\|Ga0079218_12494384	Not Available	611	Open in IMG/M
3300007255\|Ga0099791_10090468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1401	Open in IMG/M
3300009053\|Ga0105095_10188368	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1130	Open in IMG/M
3300009100\|Ga0075418_11775800	Not Available	671	Open in IMG/M
3300009143\|Ga0099792_10522684	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	746	Open in IMG/M
3300009156\|Ga0111538_12833698	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300009168\|Ga0105104_10791629	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300009174\|Ga0105241_12061597	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	563	Open in IMG/M
3300010399\|Ga0134127_10035399	Not Available	4028	Open in IMG/M
3300010400\|Ga0134122_10335969	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1310	Open in IMG/M
3300010400\|Ga0134122_11513465	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	691	Open in IMG/M
3300010400\|Ga0134122_12001396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	617	Open in IMG/M
3300011120\|Ga0150983_14068246	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	757	Open in IMG/M
3300011120\|Ga0150983_14535520	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1533	Open in IMG/M
3300012202\|Ga0137363_11332468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300012203\|Ga0137399_10065920	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2697	Open in IMG/M
3300012909\|Ga0157290_10173020	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	711	Open in IMG/M
3300012917\|Ga0137395_10013267	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4583	Open in IMG/M
3300018027\|Ga0184605_10330581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300018422\|Ga0190265_10063543	All Organisms → cellular organisms → Bacteria	3295	Open in IMG/M
3300018422\|Ga0190265_10602093	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1218	Open in IMG/M
3300018422\|Ga0190265_10807635	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1061	Open in IMG/M
3300018422\|Ga0190265_12925119	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	571	Open in IMG/M
3300019458\|Ga0187892_10021300	All Organisms → cellular organisms → Bacteria	6143	Open in IMG/M
3300019879\|Ga0193723_1167825	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	574	Open in IMG/M
3300019886\|Ga0193727_1114933	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	777	Open in IMG/M
3300020022\|Ga0193733_1031042	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1508	Open in IMG/M
3300020063\|Ga0180118_1176084	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300020067\|Ga0180109_1208285	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	558	Open in IMG/M
3300021073\|Ga0210378_10260478	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300021088\|Ga0210404_10001469	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	10035	Open in IMG/M
3300021344\|Ga0193719_10090492	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1331	Open in IMG/M
3300021432\|Ga0210384_11384567	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	608	Open in IMG/M
3300022534\|Ga0224452_1054351	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1193	Open in IMG/M
3300023057\|Ga0247797_1063697	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	544	Open in IMG/M
3300025910\|Ga0207684_10095845	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2532	Open in IMG/M
3300025910\|Ga0207684_10445292	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1112	Open in IMG/M
3300025910\|Ga0207684_10508671	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1032	Open in IMG/M
3300025922\|Ga0207646_10144166	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2146	Open in IMG/M
3300025922\|Ga0207646_10205816	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1777	Open in IMG/M
3300026360\|Ga0257173_1005897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1275	Open in IMG/M
3300026555\|Ga0179593_1001596	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3594	Open in IMG/M
3300027583\|Ga0209527_1045555	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	988	Open in IMG/M
3300027605\|Ga0209329_1142996	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300027651\|Ga0209217_1077050	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	973	Open in IMG/M
3300027727\|Ga0209328_10069876	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1075	Open in IMG/M
3300027894\|Ga0209068_10004139	All Organisms → cellular organisms → Bacteria → Proteobacteria	6867	Open in IMG/M
3300027909\|Ga0209382_10179396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2438	Open in IMG/M
3300028047\|Ga0209526_10105195	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1985	Open in IMG/M
3300028047\|Ga0209526_10366497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	962	Open in IMG/M
3300028047\|Ga0209526_10468949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	826	Open in IMG/M
3300028792\|Ga0307504_10087603	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	968	Open in IMG/M
3300028824\|Ga0307310_10725276	Not Available	511	Open in IMG/M
3300028828\|Ga0307312_11169056	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300029636\|Ga0222749_10018719	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2849	Open in IMG/M
3300029636\|Ga0222749_10733087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300030628\|Ga0247629_10419556	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300030987\|Ga0308155_1022064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	593	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1059444	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	808	Open in IMG/M
3300031424\|Ga0308179_1036347	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300031720\|Ga0307469_10002091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	7907	Open in IMG/M
3300031720\|Ga0307469_10232790	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300031740\|Ga0307468_100023325	All Organisms → cellular organisms → Bacteria → Proteobacteria	2789	Open in IMG/M
3300031740\|Ga0307468_100041960	All Organisms → cellular organisms → Bacteria	2305	Open in IMG/M
3300031740\|Ga0307468_100182431	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300032174\|Ga0307470_10133671	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1488	Open in IMG/M
3300032174\|Ga0307470_10912704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300032180\|Ga0307471_100098128	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2647	Open in IMG/M
3300033233\|Ga0334722_10755670	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300033513\|Ga0316628_103031282	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300034817\|Ga0373948_0082286	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	736	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.18%
Host-Associated	Host-Associated	11.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.09%
Plants	Host-Associated → Plants	11.82%
Aquatic	Environmental → Aquatic	9.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.09%
Freshwater	Environmental → Aquatic → Freshwater	5.45%
Sediment	Environmental → Aquatic → Sediment	3.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.73%
Cave	Environmental → Terrestrial → Cave	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.36%
Loam	Environmental → Terrestrial → Soil → Loam	30.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Lake	Environmental → Aquatic → Freshwater → Lake	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Sand	Environmental → Terrestrial → Soil → Sand	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	16.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.64%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	3.64%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.82%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.91%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002675	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF122 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003349	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM	Host-Associated	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030628	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb6 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0416.00005250	2162886013	Switchgrass Rhizosphere	MESQTLRRLIRQKLADGRLPNNSIPRVWGGAGAGETCDGCEEIITKSQFVMEGIATSEGRNAVQFHVGCFKIWDEERVVPGR
E41_08956240	2170459005	Grass Soil	MEQESLRRLIGEKLADGRLPQNSIPRLWGGAGNGETCDACEEIISKTQFVMEGVSTTGGKGIQFHVGCLHVWDSERSAPGREDTSAPLPKYGPGE
F24TB_116481262	3300000550	Soil	MEQNALRLLIRSKLADGLLPQDSIPRVWGGAGAGETCDACDELINKTQFVMEGVSATGGKGIQFHVGCFHLWDEERCAPGRT*
JGI10216J12902_1160301851	3300000956	Soil	MEDHALHLLIRGKLADGRLPQDSIPRVWGGPGNGESCDACEEIITKAQFVMEGISSEGGLGVQLHVRCFQIWDAVREVPGHEASGPV*
JGI10220J13317_114857981	3300001139	Soil	YGASMEDHTLSVLIRSKLADGRLPQDSIPRMWGGPGNGESCDACEEIITRAQFVIEGVSTSPGGLGVQLHVRCFQVWDAERQVPGHEASGPV*
JGIcombinedJ26739_1001211385	3300002245	Forest Soil	MEQEALRRLIRNKLADGRLPQNSIPRLWGGAGNGETCDACEEVITKTQFVMEGISTTGGLGIQFHVGCLHMWDAERSAPGRDDASPQFPTYGRGE*
JGIcombinedJ26739_1005366601	3300002245	Forest Soil	VEQEILRRLIRAKLADGRLPQDSIPRLWGGAGNGETCDACEEVIAKTQFVMEGVSTTGGKGIQFHVGCLHMWDSERQAPGRGDPAASDALPTYGPGE*
Ga0005473J37261_1051191	3300002675	Forest Soil	RFWRPPTRYGSHMEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDISANELPTYGPGE*
JGI26129J50193_10081522	3300003349	Arabidopsis Thaliana Rhizosphere	MEDHTLSVLIRSKLADGRLPQDSIPRMWGGPGNGESCDACEEIITRAQFVIEGVSTSPGGLGVQLHVRCFQVWDAERQVPGHEASGPV*
Ga0058897_100071293	3300004139	Forest Soil	RPFGLARPSAETQVKLAPPTRYGSHMEQETLRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITATQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDVSANELPTYSPGE*
Ga0058897_110554441	3300004139	Forest Soil	MDRESFNRIIRAKLADGRLPQNSIPGVWGGASNGETCDACEETITKAQCVMEGVSTTGSAGIQFHVMCFQIWDAARLAPGRT*
Ga0062589_1001592612	3300004156	Soil	MESSAIRLLIQQKLADGRLPHDSIPRVWGGSGAGETCDACNEVITKAQFVMEGVGAEHKAVQFHVLCFQLWDSVRTVPGR*
Ga0062590_1014947861	3300004157	Soil	MEQTALRLVIQSKLADGRLPQNSIPRVWGGAGAGETCDACEQLISKAQFVMEEVCTTGGKGIQFHVPCFHLWDEERCASPGRR*
Ga0063356_1007290432	3300004463	Arabidopsis Thaliana Rhizosphere	MEQTALRLVIQSKLADGRLPQNSIPRVWGGAGAGETCDACEQLISKAQFVMEEVCTTGGKGIQFHVPCFHLWDEERCASLGRR*
Ga0065704_106721432	3300005289	Switchgrass Rhizosphere	MESQTLRRLIRQKLADGRLPNNSIPRVWGGAGAGETCDGCEEIITKSQFVMEGIATSEGRNAVQFHVGCFKIWDEERVVPGR*
Ga0065705_105930051	3300005294	Switchgrass Rhizosphere	MDQNTLRLLIQTKLADGRLPQDSIPRVWGGAGAGETCDACEELISKAQFVMEGISTTGGKGIQFHVGCFHLWDEERCAPGRT*
Ga0065707_102704471	3300005295	Switchgrass Rhizosphere	MDPNALRLLIRSKLADGRLPQDSIPRVWGGAGAGETCDACDELISKTQFVMEGVSTTGGKGIQFHVGCFHLWDDERCAPGRT*
Ga0065707_104974862	3300005295	Switchgrass Rhizosphere	MDQNTLRLLIQTKLADGRLPQDSIPRVWGGAGAGETCDACEELISKAQFVMEGISTTGGKGIQFHVGCFHLWDEERSAPGRT*
Ga0070691_101560653	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MEDRTLRFLIQRKLAAGQLPQDSIPRMWGGPGNGECCDACEETITKTQFVMEGVSNAEGGRGVQLHVRCFQVWDAERQAPGHEASGPT*
Ga0070705_1008024451	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRDDISANELPTYGPGE*
Ga0070662_1006401811	3300005457	Corn Rhizosphere	ASMEDHTLSVLIRSKLADGRLPQDSIPRMWGGPGNGESCDACEEIITRAQFVIEGVSTSPGGLGVQLHVRCFQVWDAERQVPGHEASGPV*
Ga0070706_1000836528	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDRESFNRIIRAKHADGRLPQNSIPRVWGGASNGETCDACEETITKAQFVMEGVSTTGGAAIQFHVMCFQIWDAARLGPGRT*
Ga0070706_1003042241	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MEQETLRRLIRNRLADGRLPQDSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGLGIQFHVGCLHLWDAERCAPGRDDTSPKFPTYGPAE*
Ga0070706_1003432051	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLRIWDAERCVPGRGDISANELPTYSPGE*
Ga0070707_1000466593	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MEQETLRRLIRNKVADGRLPQDSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGLGIQFHVGCLHLWDAERCAPGRDDTSPKFPTYGPAE*
Ga0070698_1000685974	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MEQETLRRLIRNKLADGRLPQDSIPRLWDGAGNGETCDACEEIITKTQFVMEGVSTTGGLGIQFHVGCLHLWDAERWAPGRDDTSPKFPTYGPAE*
Ga0070698_1002817313	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MEQETLRHLIRRKLADGRLPQNSIPRLWGGAGNGETCDVCEEIITKTQFVMEGVSTTGGKGIQFQVGCLHIWDAERCVPGRGDTSANELPT
Ga0070699_1006817372	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDISANELPTYGPGE*
Ga0070697_1001683921	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	SIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLRIWDAERCVPGRGDISANELPTYSPGE*
Ga0070697_1017322641	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MDRESFNRIIRAKHADGRLPQNSIPRVWGGASNGETCDACEETITKAQFVMEGVSTTGGAGIQFHVMCFQIWDAARLAPGRT*
Ga0070697_1017384061	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MEQETLRRLIRNKLADGRLPQDSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGLGIQFHVGCLHLWDAERCAPGRDDTSPKFPTYGPAE*
Ga0070704_1003020571	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MEDRTLRFLIQRKLAAGQLPQDSIPRMWGGPGNGECCDACEETITKTQFVMEGVSNAEGGRGVQLHVRCF
Ga0075018_100735922	3300006172	Watersheds	MEQETLRHLIRRKLADGRLPQNSIPRLWGGAGNGETCDACEESIAATQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDISANELPTCGPGE*
Ga0075421_1000156708	3300006845	Populus Rhizosphere	VESSTIRRVIQEKLADGRLPHDSIPRVWGGAGAGEMCDACDEVITKAQFVMEGIGLAHKSIQFHVQCFYLWDSVRTVPGRTA*
Ga0075421_1000738374	3300006845	Populus Rhizosphere	MDSQPLRHLIRDKLGDGRLPNNSIPRVWGGAGAGETCDGCEEIITKSQFVFEGVSTSDGKPAIQMHVACFKIWDEERVVPGREPKP*
Ga0075431_1001943855	3300006847	Populus Rhizosphere	VESSTIRRVIQEKLADGRLPHDSIPRVWGGAGAGEMCDACDEVITKAQFVMEGIGLEHKSIQFHVQCFYLWDSVRTVPGRTA*
Ga0075431_1016299701	3300006847	Populus Rhizosphere	MEQLPPLRRLIQSKLADGRLPYNSIPRVWGGAGNGETCNACDEVITKKQLLMEGIGADKRGFQFHVRCFSVWDELRQAPK*
Ga0079218_111894741	3300007004	Agricultural Soil	MEQETLRRLIRDKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHLWDAERCAPGRDAATARLPKSGPGE*
Ga0079218_124943842	3300007004	Agricultural Soil	MEQTALRLLIQSKLADGRLPQNSIPRVWGGAGAGETCDACEDLISKAQFVMEGVSTTGGKGIQFHVACFHLWD
Ga0099791_100904683	3300007255	Vadose Zone Soil	MEQEALRHLIRSKLADGRLPQDSIPRLWGGAGNGETCDACEEVITKTQFVMEGVSTTPGGKGIQFHVGCLHLWDSERKAPGP*
Ga0105095_101883683	3300009053	Freshwater Sediment	MDQNALRLLIQSKLADGRLPQDSIPRVWGGAGNGETCDACEELIGKAQFVMEGISTTGGKGIQFHVACFHLWDEERCAPGRT*
Ga0075418_117758001	3300009100	Populus Rhizosphere	MDQLPLRHLIQRKLADGRLPRNSIPRVWGGAGNGETCDACEEAVSKRQLLMEGLSAGKVAVQFHVRCFSLWDELRRTTGT*
Ga0099792_105226842	3300009143	Vadose Zone Soil	MEPEALRRLIRNKLADGRLPQNSIPRLWGGAGNGETCDACEDIISKTQFVMEGVSTTGGKGIQFHVGCLHVWDSERCAPGREDTRAPLAKYGPGE*
Ga0111538_128336981	3300009156	Populus Rhizosphere	VESSTIRRVIQEKLADGRLPHDSIPRVWGGAGAGEMCDACDEVITKSQFVMEGIGLEHKSIQFHVQCFYLWDSVRTVPGRTA*
Ga0105104_107916292	3300009168	Freshwater Sediment	RLPQNSIPRLWGGAGNGETCDAREEIITKTQFVMEGVSTTGGKGIQFHVECLHLWDAERCAPGRDDTTARLPKCDPGE*
Ga0105241_120615971	3300009174	Corn Rhizosphere	SKLADGRLPQNSIPRVWGGAGAGETCDACEQLISKAQFVMEEVCTTGGKGIQFHVPCFHLWDEERCASLGRR*
Ga0134127_100353998	3300010399	Terrestrial Soil	MEQTALRLVIQSKLADGRLPQNSIPRVWGCAGAGETCDACEQLISKAQFVMEEVCTTGGKGIQFHVPCFHLWDEERCASLGRR*
Ga0134122_103359691	3300010400	Terrestrial Soil	MEQEVLRHLIRNKLADGRLPQDSIPRLWGGAGNGEGCDACEEVITKTQFVMEGVSTTPGGVGIQFHVGCLHLWDSERQAPGRENTNTKLPKYGPGE*
Ga0134122_115134652	3300010400	Terrestrial Soil	VEQETLRRLIRNKLADGRLPQNSIPRVWGGAGNGETCDACEEIIVKTQFVMEGVSTTGGKGIQFHVGCFHMWDAERCAPGRSDTDTGQGLPTFGRGE*
Ga0134122_120013961	3300010400	Terrestrial Soil	GLPMEQEALRRLIRSKLADGRLPQDSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHLWDSERCAPGRDATRAPDTLPAYGGGE*
Ga0150983_140682461	3300011120	Forest Soil	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIW
Ga0150983_145355201	3300011120	Forest Soil	MEQETLRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITATQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDVSANELPTYSPGE*
Ga0137363_113324681	3300012202	Vadose Zone Soil	LRHLIRSKLADGRLPQDSIPRLWGGAGNGETCDACEEVITKTQFVMEGVSTTPGGKGIQFHVGCLHLWHVPGRSDPTGS*
Ga0137399_100659202	3300012203	Vadose Zone Soil	MEQEALRHLIRSKLADGRLPQDSIPRLWGGAGNGETCDACEEVITKTQFVMEGVSTTPGGKGIQFHVGCLHLWDSERKAPGR*
Ga0157290_101730202	3300012909	Soil	VLIRSKLADGRLPQDSIPRMWGGPGNGESCDACEEIITKAQFVIEGVSTSPGGLGVQLHVRCFQVWDAERQVPGHEASGPV*
Ga0137395_100132673	3300012917	Vadose Zone Soil	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDKRK*
Ga0184605_103305811	3300018027	Groundwater Sediment	MEQETLRRLIRNKLADGRLPQNSIPRLWGGAGNGETCDACEEVITKTQFVMEGVSTTGGLGIQFHVGCLHLWDAERCAPGRDDTSAPDKLPTYGRGE
Ga0190265_100635432	3300018422	Soil	MDQEALRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHMWDAERSAPGRDDTSAPDRLPAGGRGE
Ga0190265_106020932	3300018422	Soil	MEQNALRLLIQGKLADGRLPQNSIPRVWGGAGNGETCDACEELISKVQFVMEGVSVTGGRGIQFHVACFHLWDEERRVPGCDAPSPGDA
Ga0190265_108076351	3300018422	Soil	MDSNALRLLIKNKLADGRLPQDSIPRVWGGAGAGETCDACDELISKTQFVMEGVSTTGGKGIQFHVGCFHLWDEERSVPGRT
Ga0190265_129251191	3300018422	Soil	MEQSALRLLIQSKLADGRLPQDSIPRVWGGAGAGETCDACEELISKAQFVMEGVSTTGGKGIQFHVACFHLWDEERCAPGRT
Ga0187892_100213006	3300019458	Bio-Ooze	MEQETLRRLIRDKLADGRLPQDSIPRLWGGAGNGETCDACEEVITKTQFVMEGVSTTGGKGIQFHVGCLHVWDSERSAPGREDPARM
Ga0193723_11678252	3300019879	Soil	MEQESLRHLIREKLADGRLPQNSIPRLWGGAGNGETCDACEEIISKTQFVMEGVSTTGGKGIQFHVGCLHVWDSERCAPGREDTSAPLPKYGPGE
Ga0193727_11149331	3300019886	Soil	MEQSALRLLIQSKLADGRLPQDSIPRVWGGAGAGETCDACEELITKAQFVMEGVSTTGGKGIQFHVGCFHLWDEERCAPGRT
Ga0193733_10310421	3300020022	Soil	HARGGALTTMEQESLRRLIREKLADGRLPQNSIPRLWGGAGNGETCDACEEIISKTQFVMEGVSTTGGKGIQFHVGCLHVWDSERCAPGREDTSAPLPKYGPGE
Ga0180118_11760842	3300020063	Groundwater Sediment	MDQNALRLLIQSKLADGRLPQDSIPRVWGGAGAGETCDACEELISKAQFVMEGVSTTGGKGIQFHVACFHLWDEERCVPGRT
Ga0180109_12082851	3300020067	Groundwater Sediment	MEQTALRLLIQSKLADGRLPQNSIPRVWGGAGAGETCDACEEPISKAQFVMEGVSTTGGKGIQFHVACFHLWDEERCAPERT
Ga0210378_102604781	3300021073	Groundwater Sediment	MEQEALRRLIRNKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHLWDSERCAPGRDGTNAKFPKYGPGEDLTISPLT
Ga0210404_1000146918	3300021088	Soil	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDISANELPTYGPGE
Ga0193719_100904923	3300021344	Soil	MDPNALRLLIRSKLADGRLPQDSIPRVWGGAGAGETCDACDELISKTQFVMEGVSTTGGKGIQFHVGCFHLWDDERCAPGRT
Ga0210384_113845671	3300021432	Soil	MEQETLRRLIREKLADGRLPQNSIPRLWGGAGNGETCDACEELISKTQFVMEGVSTTGGKGIRFHVGCLHLWDSERCAPGRESTSVPL
Ga0224452_10543511	3300022534	Groundwater Sediment	MDQNALRLLIQSKLADGRLPQNSIPRVWGVAGAGETCDACEELISKAQFVMEGVSTTGGKGIQFHVACFHLWDEERCVPGRT
Ga0247797_10636972	3300023057	Soil	MEDHTLSVLIRSKLADGRLPQDSIPRMWGGPGNGESCDACEEIITRAQFVIEGVSTSPGGLGVQLHVRCFQVWDAERQVPGHEASGPV
Ga0207684_100958456	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDRESFNRIIRAKHADGRLPQNSIPRVWGGASNGETCDACEETITKAQFVMEGVSTTGGAAIQFHVMCFQIWDAARLGPGRT
Ga0207684_104452922	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITATQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDISANELPTYSPGE
Ga0207684_105086712	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MEQETLRRLIRNRLADGRLPQDSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGLGIQFHVGCLHLWDAERCAPGRDDTSPKFPTYGPAE
Ga0207646_101441665	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEQGVAQPHHPRAKLADGRLPQNSIPRVWGGAGNGETCDACEETITKAQFVMEGVSRTGGAGIQFHVMCFQIWDAERLAPGRT
Ga0207646_102058161	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEQETLRRLIRNKVADGRLPQDSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGLGIQFHVGCLHLWDAERCAPGRDDTSPKFPTYGPAE
Ga0257173_10058973	3300026360	Soil	PQNCVAAVNLVPPTRYGSHMEQEILRRLIRSNLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDKRK
Ga0179593_10015965	3300026555	Vadose Zone Soil	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSATGGKGIQFHVGCLHIWDAERCVPGRGDISANELPTYGPGE
Ga0209527_10455551	3300027583	Forest Soil	MEQEALRRLIRNKLADGRLPQNSIPRLWGGAGNGETCDACEEVITKTQFVMEGISTTGGLGIQFHVGCLHMWDAERSAPGRDDASPQFPTYGRGE
Ga0209329_11429961	3300027605	Forest Soil	MDRESFNRIIRAKLADGRLPQNSIPRVWGGASNGETCDACEETITKAQCVMEGVSTTGSAGIQFHVMCFQIWDAARLAPGRT
Ga0209217_10770501	3300027651	Forest Soil	MWLSPTRHARGAFITVEQEILRRLIRAKLADGRLPQDSIPRLWGGAGNGETCDACEEVIAKTQFVMEGVSTTGGKGIQFHVGCLHMWDSERQAPGRGDPAASDALPTYGPGE
Ga0209328_100698762	3300027727	Forest Soil	MEQETLRRLIRNKLADGRLPQDSIPRLWGAAGNGETCDACEEAITKTQFVMEGVSTTGGKGIQFHVGCLHLWDAERHAPDRSDPTAS
Ga0209068_100041398	3300027894	Watersheds	MEQEPLRRLIRDKLADGRLPQNSIPRVWGGAGNGETCDACEEIIIKTQFVMEGVSTTGGKGIQFHVGCFHMWDAERRASPELPTYGGESSVDYLSSVLRIRQSD
Ga0209382_101793965	3300027909	Populus Rhizosphere	VESSTIRRVIQEKLADGRLPHDSIPRVWGGAGAGEMCDACDEVITKAQFVMEGIGLAHKSIQFHVQCFYLWDSVRTVPGRTA
Ga0209526_101051952	3300028047	Forest Soil	MEQESLRRLIREKLADGRLPQNSIPRLWGGAGNGETCDACEDIISKTQFVMEGVSTTGGKGIQFHVGCLHVWDSERCAPGRDDTSAPLPTYGPGE
Ga0209526_103664971	3300028047	Forest Soil	MEQETLRRLIRNKLADGRLPQDSIPRLWGAAGNGETCDACEEIITKTQFVMEGVSTTGGLGIQFHVGCLHLWDAERCAPGRDDTSPKFPTYGPAE
Ga0209526_104689491	3300028047	Forest Soil	LEQETLRRLIRAKLADGRLPQDSIPRLWGGAGNGETCDACEEAITKTQFVMEGVSTTGGKGIQFHVGCLHLWDAERHAPDRSDPTAS
Ga0307504_100876032	3300028792	Soil	MEQESLRRLIREKLADGRLPQNSIPRLWGGAGNGETCDACEEIISKTQFVMEGVSTTGGKGIQFHVGCLHVWDSERCAPGREDTRAPLPKYGPGE
Ga0307310_107252761	3300028824	Soil	MEQEVLRHLIRSKLADGRLPQDSIPRLWGGAGSGETCDACAEIITKTQFVMEGVSTETGGKGIQFHVGCLHLWDSERCAPGRDAASPEPQHTSASSKGGLA
Ga0307312_111690562	3300028828	Soil	MEQETLRHLIRSTLADGRLPQDSIPRVWGGAGNGETCDACEEIITKTQFVMEGVSTTGGLGIQFHVGCLHIWDAERLAPGRT
Ga0222749_100187194	3300029636	Soil	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRRDISANELPTYGPGE
Ga0222749_107330871	3300029636	Soil	MEQETLRRLIREKLADGRLPQNSIPRLWGGAGNGETCDACEELISKTQFVMEGVSTTGGKGIRFHVGCLHLWDSERCAPGRESTSVPLPKYGPGE
Ga0247629_104195562	3300030628	Soil	MDPNALRLLIQTKLADGRLPQDSIPRVWGGAGAGETCDACDELISKTQFVMEGVSTTGGKGIQFHVGCFHLWDEERCAPGRT
Ga0308155_10220641	3300030987	Soil	MEQETLRRLIRSKLSDGRLPQNSIPRVWGGAGNGETCDACEEVITKTQFVMEGISTTGGLGIQFHVGCL
(restricted) Ga0255311_10594441	3300031150	Sandy Soil	MDQNALRLLIQSKLADGRLPQDSIPRVWGGAGNGETCDACEELIGKAQFVMEGISTTGGKGIQFHVACFHLWDEERCAPGRT
Ga0308179_10363472	3300031424	Soil	VNLAPSDMLSRGGAFITMEQETLRRLIRSKLSDGRLPQNSIPRVWGGAGNGETCDACEEVITKTQFVMEGISTTGGLGIQFHVGCLHIWDAERCAPGRT
Ga0307469_100020917	3300031720	Hardwood Forest Soil	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLRIWDAERCVPGRGDISANELPTYSPGE
Ga0307469_102327901	3300031720	Hardwood Forest Soil	IRSKLADGRLPQDSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHLWDSERCAPGRDATRAPDTLPAYGGGE
Ga0307468_1000233253	3300031740	Hardwood Forest Soil	MDPNALRLLIKSKLADGRLPQDSIPRVWGGAGAGETCDACDELISKTQFVMEGVSTTGGKGIQFHVGCFHLWDEERCAPGRT
Ga0307468_1000419603	3300031740	Hardwood Forest Soil	MEQETLRRLIREELADGRLPQSSIPRLWGGAGNGETCDACEELISKTQFVMEGVSTTGGKGIQFHVGCLHLWDSERCAPGRESTSVPLPKYDPGE
Ga0307468_1001824312	3300031740	Hardwood Forest Soil	MEQEALRRLIRSKLADGRLPQDSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHLWDSERCAPGRDATRAPDTLPAYGGGE
Ga0307470_101336713	3300032174	Hardwood Forest Soil	MDPNTLRLLIQTKLADGRLPQDSIPRVWGGAGAGETCDACDELITKTQFVMEGVSTTGGKGIQFHVGCFHLWDEERCAPGRP
Ga0307470_109127041	3300032174	Hardwood Forest Soil	EKLADGRLPQNSIPRLWGGAGNGETCDACEEIISKTQFVMEGVSTTGGKGIQFHVGCLHVWDSERSAPGREDTSAPLPKYGPGE
Ga0307471_1000981286	3300032180	Hardwood Forest Soil	MEQEILRRLIRSKLADGRLPQNSIPRLWGGAGNGETCDACEEIITKTQFVMEGVSTTGGKGIQFHVGCLHIWDAERCVPGRGDISANELPTYSPGE
Ga0334722_107556702	3300033233	Sediment	MDQNALRLLIQTKLADGRLPQDSIPRVWGGAGAGETCDACEELISKAQFVMEGISTTGGKGIQFHVGCFHLWDEERCAPGRT
Ga0316628_1030312822	3300033513	Soil	MEQETLRRLIRNKLADGRLPQNSIPRLWGGAGNGETCDACEELITKTQFVMEGVSTTGGKGIQFHVGCLHLWDSERRAPGREDTSVTLPKYGPGE
Ga0247830_116767882	3300033551	Soil	MEQLPLLRSLIQRKLDDGRLPRNSIPRVWGGAGNGETCDACGETITKKQIVMEGVGVGKKTIQFHVRCFS
Ga0373948_0082286_182_475	3300034817	Rhizosphere Soil	VEQETLRRLIRNKLADGRLPQNSIPRVWGGAGNGETCDACEEIIVKTQFVMEGVSTTGGKGIQFHVGCFHMWDAERCAPGRSDTDTGQGLPTYGRGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters