Metagenome / Metatranscriptome Family F087707

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087707
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	90 residues
Representative Sequence	MRFVLCILLVALPPNFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLNGCANRGHNKEQCTNACRPGLCHPGAEQPYCIAK
Number of Associated Samples	91
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.14 %
% of genes near scaffold ends (potentially truncated)	40.91 %
% of genes from short scaffolds (< 2000 bps)	80.00 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.909 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (11.818 % of family members)
Environment Ontology (ENVO)	Unclassified (23.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 29.31% β-sheet: 8.62% Coil/Unstructured: 62.07%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07681	DoxX	10.00
PF04392	ABC_sub_bind	8.18
PF07045	DUF1330	4.55
PF00581	Rhodanese	2.73
PF03401	TctC	1.82
PF02525	Flavodoxin_2	1.82
PF12697	Abhydrolase_6	1.82
PF09948	DUF2182	1.82
PF03466	LysR_substrate	1.82
PF07883	Cupin_2	0.91
PF08501	Shikimate_dh_N	0.91
PF08734	GYD	0.91
PF00884	Sulfatase	0.91
PF02581	TMP-TENI	0.91
PF01979	Amidohydro_1	0.91
PF01734	Patatin	0.91
PF00583	Acetyltransf_1	0.91
PF07859	Abhydrolase_3	0.91
PF00155	Aminotran_1_2	0.91
PF00383	dCMP_cyt_deam_1	0.91
PF03779	SPW	0.91
PF13545	HTH_Crp_2	0.91
PF01494	FAD_binding_3	0.91
PF06078	DUF937	0.91
PF06718	DUF1203	0.91
PF00005	ABC_tran	0.91
PF09923	DUF2155	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	10.00
COG4270	Uncharacterized membrane protein	Function unknown [S]	10.00
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	8.18
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	4.55
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.82
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.82
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	0.91
COG0352	Thiamine monophosphate synthase	Coenzyme transport and metabolism [H]	0.91
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.91
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.91
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.91
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.91
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.91
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.91
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.91
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.91
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.91 %
Unclassified	root	N/A	39.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.91 %
Unclassified	root	N/A	39.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.91 %
Unclassified	root	N/A	39.09 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.82 %
Unclassified	root	N/A	39.09 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.09 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.91 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	1.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.09 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.09 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.36 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	1.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.36 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	1.82 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.36 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	1.82 %
Undibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Undibacter	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.91 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.36 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.82 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	1.82 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.91 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.91 %
Roseomonas harenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	0.91 %
Undibacter mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Undibacter → Undibacter mobilis	0.91 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.09 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.36 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
uncultured bacterium F42-01	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	1.82 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.91 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.91 %
Bradyrhizobium sp. CCGB12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	0.91 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.91 %
Roseomonas harenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	0.91 %
Undibacter mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Undibacter → Undibacter mobilis	0.91 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10007492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	3010	Open in IMG/M
3300002906\|JGI25614J43888_10049404	Not Available	1274	Open in IMG/M
3300003369\|JGI24140J50213_10254557	Not Available	539	Open in IMG/M
3300004479\|Ga0062595_100662021	Not Available	829	Open in IMG/M
3300004633\|Ga0066395_10124843	Not Available	1275	Open in IMG/M
3300004633\|Ga0066395_10622005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	635	Open in IMG/M
3300004798\|Ga0058859_11743473	Not Available	520	Open in IMG/M
3300005093\|Ga0062594_101107212	Not Available	775	Open in IMG/M
3300005105\|Ga0066812_1016716	Not Available	573	Open in IMG/M
3300005163\|Ga0066823_10003869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1893	Open in IMG/M
3300005328\|Ga0070676_10277183	All Organisms → cellular organisms → Bacteria → Proteobacteria	1128	Open in IMG/M
3300005331\|Ga0070670_100331594	All Organisms → cellular organisms → Bacteria → Proteobacteria	1334	Open in IMG/M
3300005332\|Ga0066388_100013541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6611	Open in IMG/M
3300005332\|Ga0066388_100399029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2021	Open in IMG/M
3300005332\|Ga0066388_100511321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1836	Open in IMG/M
3300005332\|Ga0066388_100558495	All Organisms → cellular organisms → Bacteria	1773	Open in IMG/M
3300005332\|Ga0066388_101015825	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300005332\|Ga0066388_101107119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1342	Open in IMG/M
3300005332\|Ga0066388_101122026	Not Available	1334	Open in IMG/M
3300005332\|Ga0066388_104888075	Not Available	681	Open in IMG/M
3300005337\|Ga0070682_100033993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3101	Open in IMG/M
3300005338\|Ga0068868_100420909	All Organisms → cellular organisms → Bacteria → Proteobacteria	1156	Open in IMG/M
3300005345\|Ga0070692_10124129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1443	Open in IMG/M
3300005434\|Ga0070709_10006594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6332	Open in IMG/M
3300005438\|Ga0070701_10182499	Not Available	1229	Open in IMG/M
3300005445\|Ga0070708_102002883	Not Available	536	Open in IMG/M
3300005545\|Ga0070695_100116370	All Organisms → cellular organisms → Bacteria → Proteobacteria	1822	Open in IMG/M
3300005547\|Ga0070693_101526556	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005764\|Ga0066903_100427106	Not Available	2198	Open in IMG/M
3300005764\|Ga0066903_100982683	All Organisms → cellular organisms → Bacteria	1540	Open in IMG/M
3300005764\|Ga0066903_102727276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	958	Open in IMG/M
3300005842\|Ga0068858_101865785	Not Available	594	Open in IMG/M
3300006050\|Ga0075028_100034553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2342	Open in IMG/M
3300006057\|Ga0075026_100793204	Not Available	574	Open in IMG/M
3300006172\|Ga0075018_10045140	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300006354\|Ga0075021_10449125	Not Available	812	Open in IMG/M
3300006755\|Ga0079222_10776769	Not Available	776	Open in IMG/M
3300006755\|Ga0079222_11486594	Not Available	634	Open in IMG/M
3300006795\|Ga0075520_1201448	Not Available	844	Open in IMG/M
3300006954\|Ga0079219_11810082	Not Available	572	Open in IMG/M
3300009090\|Ga0099827_11872454	Not Available	523	Open in IMG/M
3300009094\|Ga0111539_11405479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300009101\|Ga0105247_10165485	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	1467	Open in IMG/M
3300010046\|Ga0126384_10160772	All Organisms → cellular organisms → Bacteria	1740	Open in IMG/M
3300010358\|Ga0126370_10019330	All Organisms → cellular organisms → Bacteria	3883	Open in IMG/M
3300010358\|Ga0126370_10099171	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300010359\|Ga0126376_10280374	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300010360\|Ga0126372_13245973	Not Available	506	Open in IMG/M
3300010361\|Ga0126378_12599115	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300010371\|Ga0134125_10244200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1996	Open in IMG/M
3300010396\|Ga0134126_11534626	Not Available	734	Open in IMG/M
3300010397\|Ga0134124_11555484	Not Available	691	Open in IMG/M
3300010398\|Ga0126383_10764571	Not Available	1047	Open in IMG/M
3300010403\|Ga0134123_13086836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	535	Open in IMG/M
3300011270\|Ga0137391_10021292	All Organisms → cellular organisms → Bacteria → Proteobacteria	5355	Open in IMG/M
3300012010\|Ga0120118_1137528	Not Available	587	Open in IMG/M
3300012357\|Ga0137384_10303062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1328	Open in IMG/M
3300012476\|Ga0157344_1022469	Not Available	554	Open in IMG/M
3300012486\|Ga0157331_1035680	Not Available	516	Open in IMG/M
3300012507\|Ga0157342_1006762	All Organisms → cellular organisms → Bacteria → Proteobacteria	1096	Open in IMG/M
3300012509\|Ga0157334_1015988	Not Available	775	Open in IMG/M
3300012515\|Ga0157338_1040091	Not Available	635	Open in IMG/M
3300012958\|Ga0164299_10464126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	832	Open in IMG/M
3300012960\|Ga0164301_10510006	Not Available	869	Open in IMG/M
3300012961\|Ga0164302_10110875	All Organisms → cellular organisms → Bacteria → Proteobacteria	1539	Open in IMG/M
3300012971\|Ga0126369_10759299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1050	Open in IMG/M
3300012986\|Ga0164304_10046763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2332	Open in IMG/M
3300012987\|Ga0164307_11201073	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300013105\|Ga0157369_10414934	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium F42-01	1396	Open in IMG/M
3300013308\|Ga0157375_13452597	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300014326\|Ga0157380_10686396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1027	Open in IMG/M
3300014745\|Ga0157377_10122527	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300014968\|Ga0157379_12060831	Not Available	565	Open in IMG/M
3300015371\|Ga0132258_10300128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3950	Open in IMG/M
3300015372\|Ga0132256_101506436	Not Available	783	Open in IMG/M
3300015372\|Ga0132256_101958282	Not Available	693	Open in IMG/M
3300015372\|Ga0132256_103185308	Not Available	552	Open in IMG/M
3300015374\|Ga0132255_100585346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	1649	Open in IMG/M
3300016270\|Ga0182036_10011072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4794	Open in IMG/M
3300016357\|Ga0182032_10001655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10100	Open in IMG/M
3300017792\|Ga0163161_10314251	Not Available	1237	Open in IMG/M
3300017947\|Ga0187785_10013855	All Organisms → cellular organisms → Bacteria → Proteobacteria	2780	Open in IMG/M
3300017959\|Ga0187779_10035167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Undibacter → Undibacter mobilis	2894	Open in IMG/M
3300017974\|Ga0187777_10232620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1247	Open in IMG/M
3300017974\|Ga0187777_10533162	Not Available	823	Open in IMG/M
3300018029\|Ga0187787_10002196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4243	Open in IMG/M
3300018060\|Ga0187765_10044490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2260	Open in IMG/M
3300020069\|Ga0197907_10798004	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300021560\|Ga0126371_11257613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	875	Open in IMG/M
3300021560\|Ga0126371_12558864	Not Available	618	Open in IMG/M
3300021560\|Ga0126371_12740814	Not Available	598	Open in IMG/M
3300025464\|Ga0208076_1076212	Not Available	580	Open in IMG/M
3300025650\|Ga0209385_1095902	Not Available	970	Open in IMG/M
3300025899\|Ga0207642_10705385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	636	Open in IMG/M
3300025905\|Ga0207685_10034813	All Organisms → cellular organisms → Bacteria	1833	Open in IMG/M
3300025912\|Ga0207707_10102507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2501	Open in IMG/M
3300025915\|Ga0207693_10810893	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300025925\|Ga0207650_10266822	All Organisms → cellular organisms → Bacteria → Proteobacteria	1390	Open in IMG/M
3300025944\|Ga0207661_10178685	All Organisms → cellular organisms → Bacteria	1852	Open in IMG/M
3300026078\|Ga0207702_10197825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1861	Open in IMG/M
3300026319\|Ga0209647_1004520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10447	Open in IMG/M
3300027894\|Ga0209068_10059939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1947	Open in IMG/M
3300027894\|Ga0209068_10223018	Not Available	1042	Open in IMG/M
3300028381\|Ga0268264_10101786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2498	Open in IMG/M
3300031819\|Ga0318568_10474438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	780	Open in IMG/M
3300032010\|Ga0318569_10243053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	836	Open in IMG/M
3300032089\|Ga0318525_10346516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300032174\|Ga0307470_10418537	All Organisms → cellular organisms → Bacteria → Proteobacteria	953	Open in IMG/M
3300034125\|Ga0370484_0205100	Not Available	540	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.27%
Host-Associated	Host-Associated	22.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.82%
Plants	Host-Associated → Plants	21.82%
Aquatic	Environmental → Aquatic	5.45%
Human	Host-Associated → Human	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Sediment	Environmental → Aquatic → Sediment	5.45%
Digestive System	Host-Associated → Human → Digestive System	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.73%
Loam	Environmental → Terrestrial → Soil → Loam	21.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.36%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.64%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.91%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100074925	3300000597	Forest Soil	MRFVLCVLLVVMSTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGAEQPYCIAK*
JGI25614J43888_100494041	3300002906	Grasslands Soil	MRFVLCILLVALPPSFAFAAKGTMSLSQTQAAAKKGDAEAVSAVATTTDRQTCFNECANRGHDKGQCTSACRPGICHPGADQPYCVAK*
JGI24140J50213_102545571	3300003369	Arctic Peat Soil	MRFVLCVLLVALSPSFAFAANGTMSLSQAQAAAKKGDAKAAAAISTTVDRQTCLNGCANRGYNKGQCSKACRPGICDPGGEQPYCVAK*
Ga0062595_1006620211	3300004479	Soil	MRFMLCILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPGLCHPGAQQPYCVAK*
Ga0066395_101248431	3300004633	Tropical Forest Soil	MRFVLCVLLVVMPTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGAEQPYCIAK*
Ga0066395_106220052	3300004633	Tropical Forest Soil	MRFVLCILLVALPPNFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLNGCANRGHNKEQCTNACRPGL
Ga0058859_117434731	3300004798	Host-Associated	MINNPPSATERAFVSQRTAMKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0062594_1011072121	3300005093	Soil	MRFMLCILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPGLCHPGAQQPYC
Ga0066812_10167162	3300005105	Soil	MRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGA
Ga0066823_100038693	3300005163	Soil	MRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0070676_102771833	3300005328	Miscanthus Rhizosphere	KGDAVMRFMLCILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPGLCHPGAQQPYCVAK*
Ga0070670_1003315944	3300005331	Switchgrass Rhizosphere	GIVSQRTAMKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0066388_1000135414	3300005332	Tropical Forest Soil	MRFVLCILLVALPPNFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLNGCANRGHNKEQCTNACRPGLCHPGAEQPYCIAK*
Ga0066388_1003990292	3300005332	Tropical Forest Soil	MRFVLCILLVAMPSNIAFAAKGTMSLSQAQAAADKGDADAAAALVMTTDRQICLNECARRGHNKDQCANACRPGLCHLGAEQPYCVAK*
Ga0066388_1005113211	3300005332	Tropical Forest Soil	MRFVLCVLITVGLPTFAFAAGPISLSQAQAAAAQGDQKAAAALTLTTNRDACLSGCAQRGHPKDQCVTACRPGLCHPGAETPYCVAK*
Ga0066388_1005584953	3300005332	Tropical Forest Soil	MHFVLCILLVALSPSFAFAAKGTMTLSEAQLAAAKGDADAAAAITMTTDRQVCLNECARRGHNKDQCANACRPGLCHPGAEQPYCIAK*
Ga0066388_1010158252	3300005332	Tropical Forest Soil	MRELFVGMYNGNEIIAKKGDPVMRSVLFILLMVPTIAFAAKGPMSLSETQEAAAKGDADAAAAITMTIDRQICLNECAKRAYNTEQCTYACRPGLCNPGAERPYCIAK*
Ga0066388_1011071191	3300005332	Tropical Forest Soil	MRFVLSILLVALLPGFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQICLNECAKRGHNKEQCTNACRPGLCHPGAEPPYCIAK*
Ga0066388_1011220262	3300005332	Tropical Forest Soil	MRFVLCTLLVASLPSFVLAAKGTMSLSDAQVAAAKGDADAAAAIMMTTDRQICLNECARRGHQKDQCTNACRPGLCHLGAEQPYCIAK*
Ga0066388_1048880752	3300005332	Tropical Forest Soil	MRLVLCILSMALLPTFVFAAKGTMSLTEAHAAAAKGDADAAAAIMMTTDRQICLNECARRGHNKEQCTNACRPGLCHPGAEQPYCIAK*
Ga0070682_1000339933	3300005337	Corn Rhizosphere	MINNPPSATKRAIVSQRTAMKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0068868_1004209093	3300005338	Miscanthus Rhizosphere	MRRFVLCILLIALTPGFALAAKGPMSLSEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0070692_101241292	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MRLVLCVLLLALSPGVAFAAKDTMTLSQAHAAAAKGDSQAAAAIGTTTDQQTCLNECSNRGYDKGKCATACRPGICHPGGEPPYCVK*
Ga0070709_100065946	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0070701_101824992	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MKGDPMRRFVLCILLIALTPGFALAAKGPMSLSEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0070708_1020028831	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRFMLCILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPG
Ga0070695_1001163703	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	CILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPGLCHPGAQQPYCVAK*
Ga0070693_1015265561	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYC
Ga0066903_1004271062	3300005764	Tropical Forest Soil	MRFVLCILLVALLPSFAFAAKGTMSLSEAQEAAAKGDSDAAAAITMTTDRQTCLNECARRGHNKEQCTNACRPGLCHPGAEQPYCIAK*
Ga0066903_1009826833	3300005764	Tropical Forest Soil	MHFVLCILLVALSPSFAFAAKGTMTLSEAQLAAAKGDADAAAAITMTTDRQICLNECARRGHNKDQCANACRPGLCHPGAEQPYCIAK*
Ga0066903_1027272762	3300005764	Tropical Forest Soil	MRSVLFILLMVPTIAFAAKGPMSLSETQEAAAKGDADAAAAITMTIDRQICLNECAKRAYNTEQCTYACRPGLCNPGAERPYCIAK*
Ga0068858_1018657851	3300005842	Switchgrass Rhizosphere	MRFMLCILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMKTTERQTCLNGCANRGYNKDQCTEACRPGLCHPGAQQPYCVAK*
Ga0075028_1000345533	3300006050	Watersheds	MRELFVGMYNGNEIIAKKGDPVMRFVLCILLMVPTIAFAAKGPISLSEAQEAAAKGDADAAAAIMMTIDRQICLNECAKRAYNTEQCTYACRLGLCNPGAERPYCIAK*
Ga0075026_1007932042	3300006057	Watersheds	MRELFVGMYNGNEIFAKKGDLVMRFVLCILLMVPTIAFAANGPMSLSEAQEAAAKGDADAAAAIMMTIDRQICLNECAKRAYNTEQCTYACRPGLCNPGAERPYCIAK*
Ga0075018_100451401	3300006172	Watersheds	MRELFVGMYNGNEIFAKKGDLVMRFVLCILLMVPTIAFAANGPMSLSEAQEAAAKGDADAAAAIMMTIDRPICLNECAKRAYNTEQCTYACR
Ga0075021_104491252	3300006354	Watersheds	MRELFVGMYNGNEIFAKKGDLVMRFVLCILLMVPTIAFAANGPMSLSEAQEAAAKGDADAAAAIMMTIDRQICLNECAKRAYNTEQCTYACR
Ga0079222_107767692	3300006755	Agricultural Soil	MRFVLCILLMALSPTIAFAAKGPMSRSEAQEAAAKGDADAAAALMMTIDRQICLNECAKRAYGTDQCIYACRPGLCNPGAERPYCIAK*
Ga0079222_114865942	3300006755	Agricultural Soil	MRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRP
Ga0075520_12014483	3300006795	Arctic Peat Soil	MRFVLCVLLVALSPSFAFAANGTMSLLQAQAAAKKGDAKAEAAIATTIDRQTCLNGCANRGYNKGQCSNACRPGICHPGSEQPYCVAK*
Ga0079219_118100822	3300006954	Agricultural Soil	MRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYC
Ga0099827_118724542	3300009090	Vadose Zone Soil	FAAKGTMSLSQTQAAAKKGDAEAASAVATTTDRQTCFNECANRGHDKGQCTSACRPGICHPGADQPYCVAK*
Ga0111539_114054792	3300009094	Populus Rhizosphere	MINNPTSATERAFVSQRTAMKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0105247_101654854	3300009101	Switchgrass Rhizosphere	VSQRTAMKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0126384_101607723	3300010046	Tropical Forest Soil	MPTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQICLNECVRRGHNKEQCTNACRPGLCHPGAEQPYCIAK*
Ga0126370_100193305	3300010358	Tropical Forest Soil	MPTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGAEQPYCIAK*
Ga0126370_100991711	3300010358	Tropical Forest Soil	MHFVLCILLVALSPSFAFAAKGTMTLSEAQLAAAKGDADAAAAITMTTDRQICLNECARRGHNKDQCANACRPGLCHPGA
Ga0126376_102803743	3300010359	Tropical Forest Soil	DAVMRFVLCILLVALPPNFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLNGCANRGHNKEQCTNACRPGLCHPGAEQPYCIAK*
Ga0126372_132459731	3300010360	Tropical Forest Soil	MRELFVGMYNANEIIAKKGDPVMRSVLFILLMVPTIAFAAKGPMSLSETQEAAAKGDADAAASIIMTIDRQICLNECAKRAYNTEQCTYACRPGLCNPGAERPYCIAK*
Ga0126378_125991152	3300010361	Tropical Forest Soil	LSAVKRTFFSQRITTKKGDAVMRFVLCILLVALPPNFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLNGCANRGHNKEQCTNACRPGLCHPGAEQPYCIAK*
Ga0134125_102442003	3300010371	Terrestrial Soil	MRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0134126_115346261	3300010396	Terrestrial Soil	MKDGDDLMRFVLCLLLLALSPGVAFAAKDTMTLSQAHAAAAKGDSQAAAAIGTTTDQQTCLSECSNRGYDKGKCATACRPGICHPGGEPPYCVK*
Ga0134124_115554841	3300010397	Terrestrial Soil	MINNPPSARERAFVSQRTAMKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYC
Ga0126383_107645711	3300010398	Tropical Forest Soil	MRFVLCALLLVLSPSIAFSAKGTMSLPEAQAAVAKGDADAAAAVMMTTDRQTCLNACANRGYSKDQCTNACRPGLCHL
Ga0134123_130868362	3300010403	Terrestrial Soil	AFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPGLCHPGAQQPYCVAK*
Ga0137391_100212923	3300011270	Vadose Zone Soil	MRFVLCILLVALPPSFAFAAKGTMSLSQTQAAAKKGDAEAASAVATTTDRQTCFNECANRGHDKGQCTSACRPGICHPGADQPYCVAK*
Ga0120118_11375282	3300012010	Permafrost	MRFVLCVLLVALSPSFAFAANGTMSLSQAQAAAKKGDVKAAAAIATTIDRQTCLNGCANRGYNKGQCSNACRPGICHPGGEQPYCVAK*
Ga0137384_103030623	3300012357	Vadose Zone Soil	MRFVLCILLVALPPSFAFAAKGTMSLSQTQAAAKKGDAQAASAVTTTTDRQTCLNECSNRGHDKGQCTSACRPGICHPGADQPYCVAK*
Ga0157344_10224691	3300012476	Arabidopsis Rhizosphere	TDDQYPAFDHNAGIVSQRTAMKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCYPGASQPYCVAK*
Ga0157331_10356801	3300012486	Soil	MKGDPMRRFVLCILLVALTPGFALAAKGPMSLSEAQAVAAKGDADAAAAITLTTDRQTCLSGCANRGHKQDQCNTACRPGLCHPGASQPYCVAK
Ga0157342_10067623	3300012507	Arabidopsis Rhizosphere	FALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0157334_10159881	3300012509	Soil	MINNPPSATERAFVSQRTAMKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQ
Ga0157338_10400911	3300012515	Arabidopsis Rhizosphere	MKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCANRGHKQDQCNTACRPGL
Ga0164299_104641261	3300012958	Soil	MRFVLCVLLLALPPGVAFAAKDTMTLSQAQAAAAKGDSQAAAAIGTTTDQQTCLNECSNRGYDKGKCATACRPGICHPGGEPPYCVK*
Ga0164301_105100063	3300012960	Soil	MRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQ
Ga0164302_101108754	3300012961	Soil	RFVLCVLLIALTPSFAFAAKGPMSISEAQAADTKGEPDAAAAITLTTDRQTCLSGCANRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0126369_107592991	3300012971	Tropical Forest Soil	MRELFVGMYNGNEIIAKKGDPVMRSVLFILLMVPTIAFAAKGPMSLSETQEAAAKGDADAAAAITMTIDRQICLNECAKRAYNTEQCTYACRPGLCNPGAERPY
Ga0164304_100467634	3300012986	Soil	MKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0164307_112010731	3300012987	Soil	MRLVLCVLLLALSPGVAFAAKDTMTLSQAHAAAAKGDSQAAAAIGTTTDHQTCLSECSNRGYDKGKCATACRPGICHPGGEPPYCVK*
Ga0157369_104149341	3300013105	Corn Rhizosphere	IVSQRTAMKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0157375_134525971	3300013308	Miscanthus Rhizosphere	MKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0157380_106863961	3300014326	Switchgrass Rhizosphere	MKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYGVAK*
Ga0157377_101225272	3300014745	Miscanthus Rhizosphere	MINNPPSATERAFVSQRTAMKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0157379_120608311	3300014968	Switchgrass Rhizosphere	MKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCH
Ga0132258_103001284	3300015371	Arabidopsis Rhizosphere	MRFVLCILLVALPTSFAFAAKGTMSLSEAQTAAANGDADAAAAISMTTDRQTCLNGCANRGYNKEQCTNACRPGLCHPGTEQPYCIAK*
Ga0132256_1015064362	3300015372	Arabidopsis Rhizosphere	CILLVALPTSFAFAAKGTMSLSEAQTAAANGDADAAAAISMTTDRQTCLNGCANRGYNKEQCTNACRPGLCHPGTEQPYCIAK*
Ga0132256_1019582822	3300015372	Arabidopsis Rhizosphere	MINNPPSAIERAFVSQRTAMKGDPMRRFVLCVLLIALTPSFAFAAKGPMSISEAQAAAAKGDTDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK*
Ga0132256_1031853082	3300015372	Arabidopsis Rhizosphere	SFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLTGCANRGHNKDQCTYACRPGLCHPGAEQPYCIAK*
Ga0132255_1005853461	3300015374	Arabidopsis Rhizosphere	VMRFVLCILLVALPPSFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLTGCANRGHNKDQCTYACRPGLCHPGAEQPYCIAK*
Ga0182036_100110727	3300016270	Soil	MRFVLCVLLVVMPTHFAFAAKGTMTLSEAQAAAAKGDSDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGAEQPYCIAK
Ga0182032_100016551	3300016357	Soil	MRFVLCVLLVVMPTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGA
Ga0163161_103142511	3300017792	Switchgrass Rhizosphere	MRFMLCILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPGL
Ga0187785_100138553	3300017947	Tropical Peatland	MRFVLCVLLVVMPTHLAFAAKGTMTLLEAQAAAAKGDSDAAAAILMTTDRQLCLNECGRRGHKQDQCTNACRPGLCHPGAEQPYCIAK
Ga0187779_100351673	3300017959	Tropical Peatland	MRFVLCILLMALSPTSAFAANGPMSRSEAQEAAAKGDADAAAAITMTIDRQICLNECAKRAYSTDQCIYACRPGLCNPGAERPYCIAK
Ga0187777_102326202	3300017974	Tropical Peatland	MRFVLFILLVVLSPSFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLTGCANRGHNKDQCTYACRPGLCHPGAEQPYCIAK
Ga0187777_105331621	3300017974	Tropical Peatland	MRELFVGMYNGDEIIAKKGDLVMRFVLCILLMALLPDIAFAAKGPMSRSEAQEAAAKGDADAAAAITMTIDRQICLNECAKRAYNTDECIYACRPGLCNPGAERPYCIAK
Ga0187787_100021964	3300018029	Tropical Peatland	MRFVLCILLVALPPSFAFAAKRTMSLSEAQAAATKGDADAAAAITMTTDRQTCLKECANRGHNKEHCINACRPGLCHPGAEQPYCIAK
Ga0187765_100444902	3300018060	Tropical Peatland	MRFVLCILLMALSPTSAFAANGPMSRSEAQEAAAKGDADAAAAITMTIDRQICLNECAKRAYNTDECIYACRPGLCNPGAERPYCIAK
Ga0187765_102929502	3300018060	Tropical Peatland	VMRFVFCVLLAVTLPGSALAAKRTLSLTQAQAAADKGDANAAAALTTTTDRDTCLAECGNRGYQKGHCANACRPGFCHPEDETPYCISK
Ga0197907_107980042	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	LSPGVAFAAKDTMTLSQAQAAAAKGDSQAAAAIGTTTDQQTCLNECSNRGYDKGKCATACRPGICHPGGEPPYCVK
Ga0126371_112576131	3300021560	Tropical Forest Soil	MRFVLCVLLVVMPTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGAEQPYCIAK
Ga0126371_125588642	3300021560	Tropical Forest Soil	MRSVLFILLMVPTIAFAAKGPMSLSETQEAAAKGDADAAAAITMTIDRQICLNECAKRAYNTEQCTYACRPGLCNPGAERPYCIAK
Ga0126371_127408141	3300021560	Tropical Forest Soil	MRFVLCILLVALPPNFAFAAKGTMSLSEAQAAAAKGDSDAAAAITMTTDRQTCLNGCANRGHNKEQCTNACRPGLCHPGAEQPYCIAK
Ga0208076_10762121	3300025464	Arctic Peat Soil	MRFVLCVLLVALPPSFAFAAKGTLSLSQAQAAAKKGDAKAASAIATTIDRQTCLNGCANRGYYKGQCINACRPGFCHPEGEQPYCVAK
Ga0209385_10959021	3300025650	Arctic Peat Soil	MRFVLCVLLVALSPSFAFAANGTMSLLQAQAAAKKGDAKAEAAIATTIDRQTCLNGCANRGYNKGQCSNACRPGICHPGSEQPYCVAK
Ga0207642_107053852	3300025899	Miscanthus Rhizosphere	AVMRFMLCILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPGLCHPGAQQPYCVAK
Ga0207685_100348135	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	HNAGIVSQRTAMKGDPMRRFVLCILLIALTPGFALAAKGPMSLSEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK
Ga0207707_101025072	3300025912	Corn Rhizosphere	MRFMLCILLVASPLSFAFAVKGTMSLSDAQAAAAKGDADAAAAIMMTTERQTCLNGCANRGYNKDQCTEACRPGLCHPGAQQPYCVAK
Ga0207693_108108932	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRFVLCLLLLALPPGSVFAAKGTMTLSQAQAAANKGDAEAAAAIATTTDRQTCFNECTNRGHDKAQCTNACRPGICHPGGEPPYCVAK
Ga0207650_102668224	3300025925	Switchgrass Rhizosphere	MINNPPSATKRAIVSQRTAMKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK
Ga0207661_101786851	3300025944	Corn Rhizosphere	MINNPPSATKRAIVSQRTAMKGDPMRRFVLCILLVALTPSFAFAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK
Ga0207702_101978251	3300026078	Corn Rhizosphere	ALSPCVSFAAKDTMTLSQAQAAAAKGDSQAAAAIGTTTDQQTCLNECSNRGYDKGKCATACRPGICHPGGEPPYCVK
Ga0209647_10045204	3300026319	Grasslands Soil	MRFVLCILLVALPPSFAFAAKGTMSLSQTQAAAKKGDAEAVSAVATTTDRQTCFNECANRGHDKGQCTSACRPGICHPGADQPYCVAK
Ga0209068_100599394	3300027894	Watersheds	MRELFVGMYNGNEIIAKKGDPVMRFVLCILLMVPTIAFAAKGPISLSEAQEAAAKGDADAAAAIMMTIDRQICLNECAKRAYNTEQCTYACRLGLCNPGAERPYCIAK
Ga0209068_102230182	3300027894	Watersheds	MRFVLCILLMVPTIAFAANGPMSLSEAQEAAAKGDADAAAAIMMTIDRPICLNECAKRAYNTEQCTYACRPGLCNPGAERPYCIAK
Ga0268264_101017865	3300028381	Switchgrass Rhizosphere	MKGDPMRRFVLCILLIALTPGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK
Ga0318568_104744382	3300031819	Soil	PTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGAEQPYCIAK
Ga0318569_102430531	3300032010	Soil	VVMPTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGAEQPYCIAK
Ga0318525_103465161	3300032089	Soil	VMPTHFAFAAKGTMTLSEAQAAAAKGDTDAAAAIMMTTDRQVCLNECARRGHNKEQCANACRPGLCHPGAEQPYCIAK
Ga0307470_104185371	3300032174	Hardwood Forest Soil	PGFALAAKGPMSISEAQAAAAKGDSDAAAAITLTTDRQTCLSGCASRGHKQDQCNTACRPGLCHPGASQPYCVAK
Ga0370484_0205100_314_538	3300034125	Untreated Peat Soil	MRFVLCVLVVVLSPSFAFAANGTMNLSQAKAAAKKGDAKAAAAIATTIDRQTCLNGCANRGYNKGQCSNACRPGI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087707

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences